Gene detail

Detailed information of amic_s0069.g6.t1 in Acropora microphthalma

Genomic Location: sc0000069_pilon:87506...111157
NR annotation: XP_015754748.1, PREDICTED: DNA mismatch repair protein Msh3-like [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0069.g6.t1

ATGGACGAAAGCGGGAATAATCGAAACTCAAAACAAGGCAAATTTAACACGAAAAAGTTAAACCTCGGGAATTTGCGATGTTCCAAAGGTTCGTTCTCCGATTTTCCTCGCCTTTCATCCTCAAAGAATCAATCGCAGGCAACGATATCAAGTTTCTTCTCCAGCAAGACATGCGTCCAATCTGCCGTAAAGAGGACAGCTACTGATGTTCCTCAAAATGAGCAGAATAAAAGCAGCCCTGGACAGAATTCCAAAAGGCAGAGAGTTGGACTGGGTGATTGTTCTCTGCAGAACGACCAAGAAGAAAATCACAAAATAGACACAAATAAAGACAAATTATTGATAAGATCCTCAACTTTTGCAAAATTAAACAGCTTTAAGAAAGACTTGGATTCCAGGAATTTATCCAATGAAATGGAGGAAACCAGCAGTGTAAAATTTCCATGCACATCCTTCCAAGGAGTTATTACAGAAAAAGATACCACTAAATCTTGTGAAAATGGAACAGGATGGACAAATGTGGATGAGGACAGTAAGGAAGTGGAAGACATGGAGATTGCAAATGGGGACAATCTCAGAGAAGACTTCATTGTGTCCCAGTTTGCTCATAAATCTGTCTCTCTTCCTGGTTCAAAACAAACCAGCAGAATCAGAGATGTAGTTGAGAAAACTCAATCAAATAGTGTAAGGCGTTTGAATGGGAGGGCAAAATCTCCTTACACACCTCTGGAATTACAATTTCTTGAGGTGAAGTCAAAGTACCCTGATGTTATTTTGCTTGTGGAGTGTGGCTACAGGTACAGGTTCTTTGGAGATGATGCTGAGAGAGCTGCTGAAGTCTTAAAGATTATGTGTCATTTGGATCATAACTTTCAAACTGCAAGTATCCCTACTCACAGACTTCAAGTGCATGTTAAAAGGCTTGTTAGTAAAGGATACAAAGTAGGAGTTGTTAAACAAACAGAAACAGCAGCATTGAAGGCAGCAGGTGACAACAAAAGTAAGTTGTTTACAAGAGAACTGCACTCACTTTACACAAGGACCACCCTGGTTGGTGAAGATATGAAGACATTAGATGCCTCAGATGAAGCTGAGTCTGTGGACTTGAGCAATGGTTATTTAATGTGTATTTTTGAGACTGATCGGAGAACTACCAGTTCAAGCGGTGACAAGAGAATCTTTGGCTTTGTTGCTGTCCAACCATCCACGGGAGATATTATACATGATGAATTTGAAGATGGGCCAAGTTTCACAGAGTTAGAAACTCGCTTTGAACATATTGGTCCAGAGGAAATACTTCTTCCGAATTCTATTGATATCTTAACAGCGAACTTCATCAGGGATTATGTTACAAGAGCACAAAGGCCAGGAGACAGCATTCGACTTGAGAGGATTCCCGATCAGTCGTTCGACCAGACAGCATCCCTGAAGCTCTTAACTGATTTTTTCAGTGAGCGGAAGCGTGAAGTAAATGGGGAAATATGTAAAGTGAACATTGGGAAGGATGGCCATTCGCAAGATCGACAGAGCGCATGCGCACCTGTAGAAGTGCTACTCAATTTACCCAAATCAGTACAGTCATGCCTTGCGGCGCTCGTTCAATACCTTCAAGACTTCAAACTGGAAAAAATACTCCGATTAACCAGTAACTTCTCCAAGTTTTCCCGTGAAGACAAATTTGTAAAACTAAATGGCCAGACTCTGCGAAACCTGGAGATTTTCAAGAATCAGACTAATGGCGCTGAAAAGTCATCTTTATTTTGGGTTATAAACCACACAACGACGGCATTTGGCCGGAGGCTCTTGAAGAAATGGATTTCGCAACCTCTACGCAACGTCAGTGCAATTGAAGACAGGCTAAATGCTGTGACAGAGCTGTGTGCCGACCCGTCATGTATGACACCATTGAAAAGTCTGTTGTCTCAGCTTCCTGACTTGGAACGAGGCTTGTGTACAGTTTACCACAGGAAGTGCACGCCAGCTGAATTTGTGACAATAGCAAAATCTCTCGTGAACATCCGAAAACAGATCCAGGCAAATGAACAAGTTGCCTTAAACAAAATAGAATCGCCTCTTCTGAAACAAGTCTTCGTGGAGGTTTCAAATCAATTACATGATGTTGAAGATTTCCTCAGACTAGTTAATGAAAATGCTGTCAAGGAAGGTGACAAAACTAAGTTGTTTGAGGACAAGACGCACTTTCCTGAAATCCTGACATGCAATGTGGAAATTCAAAAGATTGAAATCGAACTAAAGAATCATCGTTCCACGTTTAGACAAGTCTTGCGTCATCCTTCGTTGGATTATTGTTGTGTCGCCGGGAATGAGTTCTTGATTGAAGTTAGAAATCCAAACTTAAAGCTGGTGCCGTCAGAATGGATTAAAATCAGCGCCACCAAACAAGTGTCTCGGTTTAGGACGCCATTTGTGGAAGAAAAGTTCAAATTGTTATGCCAATGGAGGGAGCAGCTGTCTTTGGCTTGCCACCAGGCCTGGGTGGAATTCTTATCTTTGTTCTCGGAAGGCTGCTTTAGATATCGCCGCGCTGTACATTCCTTGGCGACGCTGGATTGTTTGTTTTCATTGGCTGTTGTTGCTAAACAACCAGGCTTTGTAAGGCCTGTTGTGGAGGACACCGAAGCACACATTTACATCAAACAGGGACGCCACCCAGTGATCGACCATCTTTTACCAGAGAATCAGCAATTTGTCCCCAATGATACGAACATGAGTGTTAACGGAAATCGCTGCATGATCATAACTGGGCCAAACATGGGTGGAAAAAGCTCTTATATCAAACAGGTTGCCCTGATTGTAATTCTAGCCCAGGCGGGCTCGTATGTGCCAGCTGAGGAAGTAGAACTTGGAGTTCTGGACGCGGTTTTTACCAGGATGGGAGCAAAAGACAACATTTACAAAGGACAGAGTACGTTTATGGTTGAACTTCAGGAAACCTCTGAGATTATTTCCCAGGCTACTCCGAAGTCACTGGTTATCTTGGATGAATTAGGTCGGGGAACTAGTACCCATGACGGCACGGCCATCGCATATGCTACTCTTCACCACTTCATCAGCGAGATTTCAAGTCTCACTTTGTTTGTGACACATTACCCGTCTCTCGCTGAATTGGAAGCTGTGTTCCCAAACCAAGTCACCAACAATCATATGGCCTTTATGGCGTCACAAGAAGAAGGGTGTCAAGAGAATACCAAGTTTTACACTGTGGAGGAGGAGGCAGGGGGAAGCGGAGGCTGTGTCCCGTCTGTTACTTTTCTGTACCACTTGGTTAATGGAGCCGCAGCAAGGAGCTATGGCTTGAACGTCGCCCGCTTGGCTGGAATCCCGAAAGAAACACTAAACCTGGCAGCTCAAAAGTCAAACGAATTGGAGAATGCCATTGCCTCCCGACGATTCCTCAAGAGTGCACTTCAAGAAATATTGTCAAGCTCACACCTGAGGCGTGATTCTATCATTCATCTCAGAACTTCCTTGAGCAAATATTTTACCTAA

Transcript

amic_s0069.g6.t1

CTGATGTATTCATTTGGCAACTAAGTCACTGAATCATATCTTATAGTAAATAACTTTGATTACCAATGAGTACATCGGCCTTCCCGAGAAAAAAAAAACAGTTTTGTAGGGAAGAGACGGGGCCGGGATGTTCACAGAGTCACTGGACGACACAATACTGGTGAACCTGTGGTGTTGTTACGCAAGAGCCAATACCCAGCGGGCTTGCTCGTGATGGACGAAAGCGGGAATAATCGAAACTCAAAACAAGGCAAATTTAACACGAAAAAGTTAAACCTCGGGAATTTGCGATGTTCCAAAGGTTCGTTCTCCGATTTTCCTCGCCTTTCATCCTCAAAGAATCAATCGCAGGCAACGATATCAAGTTTCTTCTCCAGCAAGACATGCGTCCAATCTGCCGTAAAGAGGACAGCTACTGATGTTCCTCAAAATGAGCAGAATAAAAGCAGCCCTGGACAGAATTCCAAAAGGCAGAGAGTTGGACTGGGTGATTGTTCTCTGCAGAACGACCAAGAAGAAAATCACAAAATAGACACAAATAAAGACAAATTATTGATAAGATCCTCAACTTTTGCAAAATTAAACAGCTTTAAGAAAGACTTGGATTCCAGGAATTTATCCAATGAAATGGAGGAAACCAGCAGTGTAAAATTTCCATGCACATCCTTCCAAGGAGTTATTACAGAAAAAGATACCACTAAATCTTGTGAAAATGGAACAGGATGGACAAATGTGGATGAGGACAGTAAGGAAGTGGAAGACATGGAGATTGCAAATGGGGACAATCTCAGAGAAGACTTCATTGTGTCCCAGTTTGCTCATAAATCTGTCTCTCTTCCTGGTTCAAAACAAACCAGCAGAATCAGAGATGTAGTTGAGAAAACTCAATCAAATAGTGTAAGGCGTTTGAATGGGAGGGCAAAATCTCCTTACACACCTCTGGAATTACAATTTCTTGAGGTGAAGTCAAAGTACCCTGATGTTATTTTGCTTGTGGAGTGTGGCTACAGGTACAGGTTCTTTGGAGATGATGCTGAGAGAGCTGCTGAAGTCTTAAAGATTATGTGTCATTTGGATCATAACTTTCAAACTGCAAGTATCCCTACTCACAGACTTCAAGTGCATGTTAAAAGGCTTGTTAGTAAAGGATACAAAGTAGGAGTTGTTAAACAAACAGAAACAGCAGCATTGAAGGCAGCAGGTGACAACAAAAGTAAGTTGTTTACAAGAGAACTGCACTCACTTTACACAAGGACCACCCTGGTTGGTGAAGATATGAAGACATTAGATGCCTCAGATGAAGCTGAGTCTGTGGACTTGAGCAATGGTTATTTAATGTGTATTTTTGAGACTGATCGGAGAACTACCAGTTCAAGCGGTGACAAGAGAATCTTTGGCTTTGTTGCTGTCCAACCATCCACGGGAGATATTATACATGATGAATTTGAAGATGGGCCAAGTTTCACAGAGTTAGAAACTCGCTTTGAACATATTGGTCCAGAGGAAATACTTCTTCCGAATTCTATTGATATCTTAACAGCGAACTTCATCAGGGATTATGTTACAAGAGCACAAAGGCCAGGAGACAGCATTCGACTTGAGAGGATTCCCGATCAGTCGTTCGACCAGACAGCATCCCTGAAGCTCTTAACTGATTTTTTCAGTGAGCGGAAGCGTGAAGTAAATGGGGAAATATGTAAAGTGAACATTGGGAAGGATGGCCATTCGCAAGATCGACAGAGCGCATGCGCACCTGTAGAAGTGCTACTCAATTTACCCAAATCAGTACAGTCATGCCTTGCGGCGCTCGTTCAATACCTTCAAGACTTCAAACTGGAAAAAATACTCCGATTAACCAGTAACTTCTCCAAGTTTTCCCGTGAAGACAAATTTGTAAAACTAAATGGCCAGACTCTGCGAAACCTGGAGATTTTCAAGAATCAGACTAATGGCGCTGAAAAGTCATCTTTATTTTGGGTTATAAACCACACAACGACGGCATTTGGCCGGAGGCTCTTGAAGAAATGGATTTCGCAACCTCTACGCAACGTCAGTGCAATTGAAGACAGGCTAAATGCTGTGACAGAGCTGTGTGCCGACCCGTCATGTATGACACCATTGAAAAGTCTGTTGTCTCAGCTTCCTGACTTGGAACGAGGCTTGTGTACAGTTTACCACAGGAAGTGCACGCCAGCTGAATTTGTGACAATAGCAAAATCTCTCGTGAACATCCGAAAACAGATCCAGGCAAATGAACAAGTTGCCTTAAACAAAATAGAATCGCCTCTTCTGAAACAAGTCTTCGTGGAGGTTTCAAATCAATTACATGATGTTGAAGATTTCCTCAGACTAGTTAATGAAAATGCTGTCAAGGAAGGTGACAAAACTAAGTTGTTTGAGGACAAGACGCACTTTCCTGAAATCCTGACATGCAATGTGGAAATTCAAAAGATTGAAATCGAACTAAAGAATCATCGTTCCACGTTTAGACAAGTCTTGCGTCATCCTTCGTTGGATTATTGTTGTGTCGCCGGGAATGAGTTCTTGATTGAAGTTAGAAATCCAAACTTAAAGCTGGTGCCGTCAGAATGGATTAAAATCAGCGCCACCAAACAAGTGTCTCGGTTTAGGACGCCATTTGTGGAAGAAAAGTTCAAATTGTTATGCCAATGGAGGGAGCAGCTGTCTTTGGCTTGCCACCAGGCCTGGGTGGAATTCTTATCTTTGTTCTCGGAAGGCTGCTTTAGATATCGCCGCGCTGTACATTCCTTGGCGACGCTGGATTGTTTGTTTTCATTGGCTGTTGTTGCTAAACAACCAGGCTTTGTAAGGCCTGTTGTGGAGGACACCGAAGCACACATTTACATCAAACAGGGACGCCACCCAGTGATCGACCATCTTTTACCAGAGAATCAGCAATTTGTCCCCAATGATACGAACATGAGTGTTAACGGAAATCGCTGCATGATCATAACTGGGCCAAACATGGGTGGAAAAAGCTCTTATATCAAACAGGTTGCCCTGATTGTAATTCTAGCCCAGGCGGGCTCGTATGTGCCAGCTGAGGAAGTAGAACTTGGAGTTCTGGACGCGGTTTTTACCAGGATGGGAGCAAAAGACAACATTTACAAAGGACAGAGTACGTTTATGGTTGAACTTCAGGAAACCTCTGAGATTATTTCCCAGGCTACTCCGAAGTCACTGGTTATCTTGGATGAATTAGGTCGGGGAACTAGTACCCATGACGGCACGGCCATCGCATATGCTACTCTTCACCACTTCATCAGCGAGATTTCAAGTCTCACTTTGTTTGTGACACATTACCCGTCTCTCGCTGAATTGGAAGCTGTGTTCCCAAACCAAGTCACCAACAATCATATGGCCTTTATGGCGTCACAAGAAGAAGGGTGTCAAGAGAATACCAAGTTTTACACTGTGGAGGAGGAGGCAGGGGGAAGCGGAGGCTGTGTCCCGTCTGTTACTTTTCTGTACCACTTGGTTAATGGAGCCGCAGCAAGGAGCTATGGCTTGAACGTCGCCCGCTTGGCTGGAATCCCGAAAGAAACACTAAACCTGGCAGCTCAAAAGTCAAACGAATTGGAGAATGCCATTGCCTCCCGACGATTCCTCAAGAGTGCACTTCAAGAAATATTGTCAAGCTCACACCTGAGGCGTGATTCTATCATTCATCTCAGAACTTCCTTGAGCAAATATTTTACCTAAGATGACACCAAGGTCCGAGGAAGCTAACGTAATTAATTTTGCGAGATGAACTGCGGTTTATAAGCATATATATATAGCTCACGTAGATATTTTTCAGCTTGCAAGTGATTAGCGGATTCCGCTGACGAGAAAACTCTTATGCTTTCGCTTATGCTTATGTGTGCCCGTTTCACACTTCAGTATTCACagcataagcataagctaagtctaagcgtaaCACACGCGTTTGTCACATTAGGGTTGGCGTTTGTCTGGGCCATTTCTTTTAATTTGTTAGGATTAGGTTACTAGTTTTTGCTTTCTTGTGGAGGACACTTCTAGTGTCTAATTACTTGCAATCGTGGACATATCAGATTTTGCCCAAACcaggagctgatgagtgggagcattcaactcacataatgcacctatgtcacgacacttttacagactgatctatatttagaacaccatttcttttgtgaaagaaaggctgttccggtcaagttaggcaataacgtcaattagtttcttgtcattggtcatggcgctcccacgggagtctcattcacgggaaattcgatctaaaaataaatcaatctatgaaaacgctgtgacaggaatgtagggtagttgcatgctccttctcatcggctcctgccgaaactgattggCTGACCGACAACAAGGCGAGGTTATCAAGGCAACATGGAGACGATGGCGGTTGAGGAATGTAGCGCTAAATCtgtttttgttgttgttgttgttgctttttctttttcgttAAATGTCCATAAAATGTATCAAAAAATGTCCATAAAAATGTATCACAAAATAGGCGAACACTACATAGGAACGAAAATGTAAAGGAAATGGCCCAGTCCTACCAAAATTCCCGAGTTTTCCGTGATGAGTGTTGATCGGGGTAATGTTTTGGTTAATGAATTAGAGGTGAGTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P20585	DNA mismatch repair protein Msh3 OS=Homo sapiens OX=9606 GN=MSH3 PE=1 SV=4
P13705	DNA mismatch repair protein Msh3 OS=Mus musculus OX=10090 GN=Msh3 PE=2 SV=3
Q2UT70	DNA mismatch repair protein msh3 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=msh3 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004850 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00488 all species →	MutS_V	MutS domain V	Domain	Interproscan
PF01624 all species →	MutS_I	MutS domain I	Domain	Interproscan
PF05192 all species →	MutS_III	MutS domain III	Domain	Interproscan
PF05188 all species →	MutS_II	MutS domain II	Domain	Interproscan
PF05190 all species →	MutS_IV	MutS family domain IV	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000432 all species →	Domain	DNA mismatch repair protein MutS, C-terminal	Interproscan
IPR016151 all species →	Homologous_superfamily	DNA mismatch repair protein MutS, N-terminal	Interproscan
IPR007696 all species →	Domain	DNA mismatch repair protein MutS, core	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR045076 all species →	Family	DNA mismatch repair MutS family	Interproscan
IPR007695 all species →	Domain	DNA mismatch repair protein MutS-like, N-terminal	Interproscan
IPR036678 all species →	Homologous_superfamily	MutS, connector domain superfamily	Interproscan
IPR007860 all species →	Domain	DNA mismatch repair protein MutS, connector domain	Interproscan
IPR017261 all species →	Family	DNA mismatch repair protein MutS/MSH	Interproscan
IPR007861 all species →	Domain	DNA mismatch repair protein MutS, clamp	Interproscan
IPR036187 all species →	Homologous_superfamily	DNA mismatch repair protein MutS, core domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11361 all species →	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006298 all species →	Biological Process	mismatch repair	Interproscan
GO:0030983 all species →	Molecular Function	mismatched DNA binding	Interproscan
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006312 all species →	Biological Process	mitotic recombination	Interproscan
GO:0140664 all species →	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08736	MSH3; DNA mismatch repair protein MSH3	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.