Gene detail

Detailed information of amic_s0070.g101.t2 in Acropora microphthalma

Genomic Location: sc0000070_pilon:1218047...1243141
NR annotation: XP_029197445.1, protein Smaug homolog 2-like isoform X3 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0070.g101.t2

CCAAATACAATGAGTTCACAACTAAAGCAAGGCCTTGAAACGTTGACAGCATATAACATCACTCACTATTGTTGGCTATGTTTGGGATGATTTTGCCGCTTTTGAGTAGCGAAACATTTCTGTGGAAATTCTCGGTTGGAGTCACATGGTGTACACTTAAAATCGAACGAACCAACTCAACAATGGGTTGCCCTACTGTTCGCTAAGCGAACTTGACATGTACTTCCGTGTTATCCATAGCGAACAAGTGAAGAGACGAATCGAGAATTTCAAAGACGAAGTTAATTTGTTTTATTGGTTAAACGAGCTTGTCAAATAAAGTATAGAGATGACTTCTGCTTATTTCAATCGTCCGGATATTCCTTTGACTAATCACAGAACCCATAAAAATGGTTCGAATGTTCGCCTGGGACCAAGAAGACCATGGACAAGGCGTTTTCACCATTAAAAAATTAAATCTACAATGAAGAGAAGCTGATTTACTTCAGAGGTTCTTTGCCGCCCCCGCAGAATGATGTTGATAAACAAGAGCAAAATTCAATAATTCTTTTCGTAAATAAATGTTTCTCTCCCACCATCTTGACAATGGTCACGTGATGATTTTCACCCCTATGACATCATAGCGTTTTGTTGTGATTGGCTCGATATAAAAAGCAAAGCGAGCTTCTTGCAAGACAAGGAGAGTGTTAGTGGAGGTGGAAATTTTGTCAATTTTTCGCGTTCGGTATCGGAAAAGATGACAATAATAGGTGTTGAAAGTCTGAAGGAAGCGTTTAAACTTGTGTAGTGAGCTTGTAAGCTCGTTAGAGGAGACAAATACCAATAATTATACAGACACATTAGTGCAAAGGAAGTGAGTCGAAGGATTTGTCTTCATCGAGCGATATGAGGCCTGCCCATCACACGCTCTTTCGGGACCAAGTTAGCACCTTGGTGGAGTGGTTTTCCCACTGGAATGATTGTGAACGAACCATCGCGCTCTACACACTCCTAATGAGAATTTCCACAATACAGGCAAAATTTTTGTCGTTAATCCTGGAGCACACCTATCGCGAGGATTCTTACGAAGTTCAGGTGATGCAAAAGCGTGCTAACGACAAAGATTTTGTGAGGAATTTAATGTATGAAACTAAAGAAGCAGCTGTCAAAAAGCTCCTAACACATTTGCCACTCCTGAATCCAAGAAATGATGAGGCGAGATACGAGTACCTTCATCTACTTCCAAAAATTCTGCATCACTCTGTGGAGCACTCTGTTCATCAAGAAGAATGTCGACAGCTTTTGTCACTTGCTGTAGTTCATCCTGCATTCCCCCCTGAAGAGAGAAATACACTGCACCACTGGCTGAGTCAACTTGATAGGAGTCTTGGTTTCCAAGAAAGGCAACAAGCTACAAATTTTATGACGGAGAATCCAGATGTACGGCCAAACACAGGGTGTGAAAACCTTGTTCGACAAAACTACAGACGAAGGATGAATGGATGGCGCAATCAACAACCACTTGTTCATGGCGACTCTGGATTTGGTGGTTCGTTTGAATCTCCACCAACCCATCTGTCAGTTTCACCGTCTCCAAGGAAAGCCAGGTCAAATTCGCTCACCCCTCCCCCACCGGGGAAAGGTCGTGAATCTAGTTTGGATGATCATGTAGGGAAGAAAGAAATTGAGAATCGTCCGGGCAGGTCCCAGTCGTTTCCAGTCGATCCTCAAACAGTAGCAAGTCACTCAATGTCACCTCAGTCATCTGTGGAAAGTGAAGTGGATGAAAATGTGCCCGTACAGAGAGGCAGTAGTTTTTCTGAGAATACAAATCCAGGAATGAAAGGTATAGGACTCTGGTTAAAGCATCACAGATTGCACAAGTATACAAGCCTATTTTCAAACCTTACTTATGAAGATATGTTAAATCTCACATCAGAGATTTTGGAAACTAAGGATATCACCACAGGGGCAAGAAAGAAGATTTTGTTGAACATTAATAAAATATCAGATAGAGGAGAGATATTGTCCAGATTGGAAAAGGATGTGCTTGTGCCTGGTAAACTAGAGGAGGTCTTGAGTGCATTGAAAGAACTAATTGTTATGCCTTTGAAACCATTTGACCCGCCCCTCCCTGAAGCTTCTGCTCAAGCTTCCCATCACTCTAAAGGTCAGATTTCACAAAGGCTGCCTCCACTTCACCCAGATGATATGCCATCACGCATTGCAAGAGTCCTTGGTAGAGCTTGCACCCAAATTCTAGTGACAAGAGTTAATGAACTGGAATGCTGTAACTTTTACATTCAACTTTTGGATTCAGCTCTAAACCTTGAGGCATATACCCCAGCTCACAAGGCGAGATTTCAGTCATGGAGAAAGGAATGTCTGAAACTCGTAAAACAACTACGCTGGCACTCACATGATAATCATCCAAGAGGGTGGTACCATCATTCTGGAGACTCCAGTGGGCTTCCTGCAGGTTCAGGGGGACATAATTCTGGTGACTCTTCAGGTGGTGCTGCTGGTCCATCTGCAGGCTCAGGTGGACCAGGCTCGCATTACCGAGGCTCATCTCGTTATTCTGCTAACAATCACTCCGGCCAGCTTCGAACTAGTAACAGTGCTGAATCACAGATGCAGCATAAACCACGACTGGTAAGAGCGCATGCTGTCGTGGGCAGGACAAAGTCCCTTCCAATTGAACCAACACAACCACCAAGAGTTGCATTACCACCACAACTTTCAGCTGATCGTGAAAATATTGATGCTGGTCTGGAATCTCTTTGTATCAGTGTAACAGAACATGCTTTGTCAGATTCCAAAGAAGATTGTGTGGGTTACAGTAGTTATTACAAACAATAAAGAAAGCCACAAAGTTGCTTTGCTTTACATATCCAGGAGTTGTAGGCATTATATGTAATAATAATAATATGTTAAGAAATATTATTATTATAAACATCAACATCAATCAGATTTATTGATAAAATTGTAAAAATACAGCATAACATTTTGTTACCAAAGTAGAAATTAAACCTCAAAGAGGCTGTAGCTCAAAACTGTCTTTTTAGCAGGAAACATTTTGATCTCCAAATGGTTATTGAGTTGTGTAAGTACAAAGAATGGACCTGTTAAAATTTATTGGCTGTGATTTTAGCCGTAGATAAATAATATTATATTACTGTAATAACTATTATGGTTGAATCTAGGTTTAGGTATAGTAATATTGTTGAGTATTTAGGCTTGTGGTTAGTTGCTTTTAAATAATTAAGTTATTGCATTTTTTCTATTGTTAATGATATTCCCTTTCCTCTTTTCCCTTCATCTGTTTTTAGCTCATTCATGTGTCAAAAAGTTCTATTCATATTTGACATCAAAATTGCATAGCAAAATCAGTTGTGTTTCTTGAAAGATTTGTCTTCCAGGTTTCATGTTTTTGCCAAAAGTAGAACCTGCAAATCATTTGACATAACATCACTTCAAAATGTGAAACCAATGTTAAGGTTTGTTTCATGGAGTCAGGGTTATTGTGGTTGTAGTCAGAGAAACATCTTTGTCCTGTGTTTTCTCATCTGCCTCAATTGTTTTCGTGCTGTGGATTTTTTCCACACAGCTTGTCGTTTTCTACCTTTCTGGCTAGCTTATTAACCACGCAAATGTTGGTGCAAAGCATCAAATTTTCATGATCCAGATATTCATAACTTTGTATACTGGTAAATCTTTGTTTACAAAAATTGAAGGCTGGTCTTTTTCCCATTTTGTGACGCATGGCTATATACCAATAATAAAATTGTTATTGAAAAATTTGGATTTAAGGAAGAGAAACCAGACATATTTGTGGAAGTTGCTATTTATTTAACTGAATGTTTGAGGTTTTAGGCATCACATTTAAAATTTCTTGTGGCATGTTCACTGGCTGAATTTTAGTACCAAATTCAAATTTGTGCTTTGTTTCTAAGGGGTCTGAATACTGTGCTACTCTGGAATTTTTTTTCTTGGGGATGTGAAATTTATCAGAAATGCATTATTAAAGTATTTCTTATTAAGGGTACAGTAATTTAACATCCAGAGAAATGTTTTCAATGCTAGTGGGCAAACTAACTCAAGCGTAAATCCTTTCATTTTTAAAGCATTACTGTTTTCAGTGTTCTTGTTAAATGAAGGTTTGAGTGATGCTATGATGTACTGAAAGTTACTATGAATGAATAATCAATGACTATATCTGGCTGTGACATATAACAAGAATGAAAATGTCTCTTCTTGCTGAGTATGTTTGATGTACTCAATTGAAGTTTGTTGAGTTGTGAAAGAGAATTATTGTTCCCCCAGTTGTGTGAAATGTCATTCTAACATTACATGTGATAATTATTTGAACATTTGCTAAATTTTTGAATTGTTTTGCTGACTTATTGTAAATTTGCTCTCAGAGATTACGTTCTCGGTTGTCATAATATTAATGCTGGTAATAATGCATAATATTAATGCTGGTAAACTAAGAACCAGCTAACAGTGTGCAGGATGTCATGTGCAGTAGGTCACACTGGGTCTGCCAAATCTTTTTTTATAGCGTAAGAAAATAGCACATTTCAAAAAGAAATCTTGTGTCAATTTTGTAATAGTAGAGAAAAGtttttgtttttctttcgttttgttttgttttttttttctttttGGAAAACTGAGATAGCAGGAAGAATTTCTCTAGGGCATTTTTTCATTCTTAACCATACCTCAGTTCCATCGATCATGTCATTATAGTATTCTTTAACCCAGGTGGTTTTTTAGATATATAACAATACTTTGAATTTAAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5PRF9	Protein Smaug homolog 2 OS=Homo sapiens OX=9606 GN=SAMD4B PE=1 SV=1
Q80XS6	Protein Smaug homolog 2 OS=Mus musculus OX=10090 GN=Samd4b PE=1 SV=1
Q8CBY1	Protein Smaug homolog 1 OS=Mus musculus OX=10090 GN=Samd4a PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003202 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR050897 all species →	Family	SMAUG/VTS1 RNA-binding	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR037093 all species →	Homologous_superfamily	Smaug, PHAT domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12515 all species →	STERILE ALPHA MOTIF DOMAIN CONTAINING PROTEIN 4-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000289 all species →	Biological Process	nuclear-transcribed mRNA poly(A) tail shortening	Interproscan
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0017148 all species →	Biological Process	negative regulation of translation	Interproscan
GO:0030371 all species →	Molecular Function	translation repressor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K27396	SMG; protein Smaug	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.