Detailed information of amic_s0070.g51.t1 in Acropora microphthalma

Genomic Location: sc0000070_pilon:756350...761964
NR annotation: XP_029207380.2, LOW QUALITY PROTEIN: TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8R2K4TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L OS=Mus musculus OX=10090 GN=Taf6l PE=1 SV=1
Q9Y6J9TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L OS=Homo sapiens OX=9606 GN=TAF6L PE=1 SV=1
Q9MAU3Transcription initiation factor TFIID subunit 6 OS=Arabidopsis thaliana OX=3702 GN=TAF6 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006248 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07571
all species →		TAF6_CTAF6 C-terminal HEAT repeat domainRepeatInterproscan
PF02969
all species →		TAFTATA box binding protein associated factor (TAF)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009072
all species →		Homologous_superfamilyHistone-foldInterproscan
IPR011442
all species →		DomainTAF6, C-terminal HEAT repeat domainInterproscan
IPR004823
all species →		DomainTATA box binding protein associated factor (TAF), histone-like fold domainInterproscan
IPR037796
all species →		FamilyTranscription initiation factor TFIID subunit 6Interproscan
IPR046344
all species →		Homologous_superfamilyTAF6, C-terminal HEAT repeat domain superfamilyInterproscan
IPR016024
all species →		Homologous_superfamilyArmadillo-type foldInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10221
all species →		TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0046982
all species →		Molecular Functionprotein heterodimerization activityInterproscan
GO:0006367
all species →		Biological Processtranscription initiation at RNA polymerase II promoterInterproscan
GO:0000124
all species →		Cellular ComponentSAGA complexInterproscan
GO:0003713
all species →		Molecular Functiontranscription coactivator activityInterproscan
GO:0005669
all species →		Cellular Componenttranscription factor TFIID complexInterproscan
GO:0016251
all species →		Molecular FunctionRNA polymerase II general transcription initiation factor activityInterproscan
GO:0046695
all species →		Cellular ComponentSLIK (SAGA-like) complexInterproscan
GO:0051123
all species →		Biological ProcessRNA polymerase II preinitiation complex assemblyInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K03131TAF6; transcription initiation factor TFIID subunit 6-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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