Gene detail

Detailed information of amic_s0070.g70.t1 in Acropora microphthalma

Genomic Location: sc0000070_pilon:925143...933406
NR annotation: XP_029207375.2, menin-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0070.g70.t1

GTGATCAGGTTTTTGGGCTGTCGAGTTGCATTCAAGATCCGTTACGACGGAACCGCGAGCATTCTCTAAACTGAAGAAAAGCTGTTGTTTGAACTGATCCTATCTTTATGTGGAAGACATATCTATTTGAATCAATAAGTAAGCCCATTTGAAGAGACTGGATCATCACTGTCTAGAATGGATACTAACTCCAGATTCCCTCTGAAAGACATCCCTGCAGTGATTGAAGTTTTTAAGGCCGAACTCTCAGATGCTGAACCAAACTTAGCCAAATTATCCATCATTTTGGGCTTTTTTGAAACTGCACTCACTTGTAAAGGATCGATGAATCAATGTCCCAGCTTGGACAAAGAAACTTACGATGCTCTCGCTGGGAAATTCCAGGCCTTGGTTCAAAAAAATTTGAACGCGAACAAAGAGCAAAGGCCAGCGACGAGGGAATTTGTTACAGATGTCGCCGATCTAATTTGGAGCTGTCTCTCGAAGTCCTATTTTAAAGACAAACCTCATATACAAAATTTATACAGCTTTTTGACAGGGAATCGTTTGGATTGCTTTGGGGTTGCTTTTGCTGTAGTGGCTGTGTGCCAAGCACTTGGCTATAATGATGTCCACTTGGCCCTTTCTGAAGATCACGCTTGGGTTGTTTTTGGAGAGAATGGTAAAGAAACAGCAGAGGTAACTTGGCATGGAAAAGGTAATGAGGATAAACGTGGTCGTCCTGTGGATTTTGATGGTAACAATGGCTGTAGCTGGTTGTATCTAAGTGGGTATCCTGTGAAATGCACAAGGTACATGGAGGTTGCATCAATGGTTTCATCTATAAACCCCACCATAAGCAGTTCAAGTGATAGCTCTGAGCTGGCTGGCTTGCAGCAGAGTCTCCTATGGTTGCTCTACGATCTCGGTCACCTTGAAAGGTATCCATTAGGCTTGGGCAACTTAGGGGACTTGGAGGAAATATCTCCCACTGCCAATCGTCCAGGAGCTGAGGAGATCCTCAAGGAGGGAATTAGAGTAAACCAAACAATATATAAAGATCAACATGTTTATCCCTACACATATCTTGCTGGGTTTTACCACCGACAGAAGCAGTTTATGAAAGCCATGGAATACTGGGTGAAGGCAGCACATGTTGCTGGGAAGTACAACTATTCAAAGGAAGATGAGGAGATGTACAAAGAATTTTATGAAATAGCCAATGATTTTATCCCCAACATCCTCAAGATGTCATCTGCAACCAACACTGAAAATGGTGCTGTTGACAAGAATTCTAATCTAGCTGACAACCCCAGCTTTTTGTCTCTTGTTCTTCAGTTTTATGATGGCATCTGTTTATGGGAAGAGGGTAGTCATACCCCTGTTTTACATGCTGACTGGGCAAAAAAGCTTGTGCAGTCGTTATCTAAGTTTTCGCCAATATGTAGGTCTGCACTTTCCTCCCCTCTCCATAAAGAAAAATTACAACCAAAGCCTGAGTTAATTATCAGTAAGGATACTGGAAGTGGAGCTCCCTCATCATCTTTAAGCAAAACTGAAGACGGAAGCCTGATGGCAACTAGTTTGGAGAACTTAAACAAATCGGTGGAATTGTGTCTGAAAAGCGAGAAAATGAGGGCCATGCGAAATCTGTTGACAACTGGTGGCAAAATTAACACAAGTGCAATCAAGTTGCAGCTAACTGCACAATCCCAAGTGAGTGTGCCAAAGAATCGGAGGAGGACTTCATTTAAGACGGATGATTATGTATATGACTTTGGAGAAGGAGCAGAGGGGGATGAAGAAGATGACAATGATGAAGAAGAGAGGCCAAGAAAAGTTATGAAGAGAGACTGAGATTTTATTGTGTATCAAGTTACCAGGTTACCAATTGATACTGTGTTTGAAAGTGGTAACTACATTCTTCTTGTTCATGGTAACAGAAAGAAGACCTGATACAGATTTTGTAGCCAGCTCAACACTTGAGCGCTACACTATTGTTTTGCCAGAAATTTGGCCACAATTCTGACATAACAGGAAATAAGCTTTCTTGATGTTGCTAACCATCTATTCTTAAAATTCCTGTTATATCCCTCAAAGAGACCAAAATCGTCGGTTCTTACCATGCAAATAAAACTGGGTTTAAAACCATATTTTTTTTAAAGAACATGACTGCAATCTAACTAAAAAGTCATGGACCTCTTATTTCTCCATtatatagatatatgtgtgtgtgtaaatatacatatacataaacatctgtgtatctatctatatatttatatctatatctatatatatatatgtatgtatgttttgtaaataaacccctttcggcagctggtatatcggaggatagcttaacgctgaaagattgtctgaaaaacaaacagctggctgagaagcaaagcttcaagggcaactgtgaaattttgaggataatctttcagccgagggcattatcgtccgacattccagcaagtcggaaaagagtttatttatttaataacgctccaaattatttctcaaggccaatgcatgtagatcgttcctgcatattttgtggattttgttttgtttctcagtacaagattttcaaccagcattatattaatctgtcactggcttctgcaaaacgttttctttggttttccttgaccatttaaaatttagcttgaacattcacttgtttcttggttttccttccatcaaaataaaatcagatgatggatatcaggtcggacggatatcgtctgaaaaccatcatcagattttgtatcatgtgatcagttttatacaatgagtgtctgcagaaattatttggtgagttataCATCAGGGGTCCTTTTCTGTACTTTCTTATCCTTAACTGTGTTCAAGTGGACTTAGTGTGCCCAAGTGGACTTCGTTATAATATCACATGTGTGGGGGTGTCCATTTTATTTTAATAATAATCTGAAGCCTCAGGTAAAATACAGATTTTAGTGTGTTTTAATTCAATCATTAGTCCTTACGTTAACCAGAAAATTTTTTTACATTGATTCATCCTGCCAGCAATGATTTTATAGCAATCTTACAGAGAGGGCTTGACTGCATTAGTGAAGGAAAAAAAATGGTCCGAAAGGTCTGATATAGAAAGAGGCCTGTGTCTTAGCCTTGACAAGGTTACCATAAGTTGTTACTATGTATTACTTTGTAAGCGCCCTTACATTTGTTGGAACCAGAAGTGCTGAAATGTGGATATCAATACTGTGCTATCTTATTAGCCAGCATAAGAACAATAGGGGTTACATTTGTATAGCAAAGAGTATTCCCAGAGAAATAAGTTAGCAGGGACACTTCTTTTAATTGAACTGCAACCTGACCTATACTGTCGCAGGGTTTATATCATTATATAATGAAGTTAAAAAGAGAAATCTATTAGGAAGACATTCATTTCAGTTGCAAATTTTATTCCATCCACAGCCCATCCATAATTTATAAATGTTAGGGCTTTATACAAATTATGCTGTAAGAGGGAAATTGTTGAAGATTCTTAGACAAAGTGTTTATAGAAATTTAGCGAAGTTATCTTGACACTGCCGTGTGACTTAAATGTGTCAAGTTATTCATGTGACAATAAGTTGGTCTATCTTAAGTTATAACAGTGTGATGGGCCTTTTCATTTTTGAATAAAATGTCTTTATTGGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O88559	Menin OS=Mus musculus OX=10090 GN=Men1 PE=1 SV=2
Q9WVR8	Menin OS=Rattus norvegicus OX=10116 GN=Men1 PE=1 SV=1
A2SXS5	Menin OS=Canis lupus familiaris OX=9615 GN=MEN1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009499 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05053 all species →	Menin	Menin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007747 all species →	Family	Menin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12693 all species →	MENIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0000403 all species →	Molecular Function	Y-form DNA binding	Interproscan
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0000976 all species →	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008285 all species →	Biological Process	negative regulation of cell population proliferation	Interproscan
GO:0035097 all species →	Cellular Component	histone methyltransferase complex	Interproscan
GO:0045786 all species →	Biological Process	negative regulation of cell cycle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14970	MEN1, MNN1; menin	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.