Gene detail

Detailed information of amic_s0070.g86.t2 in Acropora microphthalma

Genomic Location: sc0000070_pilon:1069706...1074066
NR annotation: XP_044185170.1, DNA-directed RNA polymerase III subunit RPC6-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2T9S3	DNA-directed RNA polymerase III subunit RPC6 OS=Bos taurus OX=9913 GN=POLR3F PE=2 SV=1
Q9H1D9	DNA-directed RNA polymerase III subunit RPC6 OS=Homo sapiens OX=9606 GN=POLR3F PE=1 SV=1
Q921X6	DNA-directed RNA polymerase III subunit RPC6 OS=Mus musculus OX=10090 GN=Polr3f PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007483 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05158 all species →	RNA_pol_Rpc34	RNA polymerase Rpc34 subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR007832 all species →	Family	RNA polymerase Rpc34	Interproscan
IPR016049 all species →	Family	RNA polymerase Rpc34-like	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12780 all species →	RNA POLYMERASE III DNA DIRECTED , 39KD SUBUNIT-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005666 all species →	Cellular Component	RNA polymerase III complex	Interproscan
GO:0006383 all species →	Biological Process	transcription by RNA polymerase III	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03025	RPC6, POLR3F; DNA-directed RNA polymerase III subunit RPC6	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.