Gene detail

Detailed information of amic_s0071.g33.t2 in Acropora microphthalma

Genomic Location: sc0000071_pilon:590231...627358
NR annotation: XP_029192686.2, unconventional myosin-If-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0071.g33.t2

ATGGCCGAAAGTGACGTGGACGATATGGTCGAACTCGAAGAGATCTCGGAGAAAGCCATAGCGGCAAATCTGTGTACGCGACTTAAGAGGGAAACAATTTATACGTATATTGGCCGCGTGTTAATTGCTCTAAACCCTTTTAAACTGCTCCATATCTATGGTCCAGATGCTATCGACTTCTATCGCGGTATTGATCCAGAAGATGATTTTGATTCACCTCAACAAGATGACCGTGCCACCCGCTGTAATACAGCACAAATGCCATCAGAAATACTAGAAAATAGACGAAGAAGTTCTCAAGTCGAAGGTGGCCCTGTCGCACCGAGTGTACCTGAACTTTATAAGAATTGGAAGGGACCCAAGCCTCCTCATTTGTACGCTCTTACCAACACAATGTACCACAACATGATGATGGAACATGAAAATCAGTGTGTCATTATCAGTGGGGAGAGTGGTGCTGGCAAAACAGTATCTGCCAAACATATAATGAACTTCATAGCAAAAGCATCTGGGAAAGGATCAGACAAAGTTGAGCACATCAAAAACATCATTATTCAATCCAATCCGCTGCTGGAAGCTTTTGGCAACGCCAAGACTGTCAGAAACAACAATTCCAGCAGATTTGGAAAATTTATGGAAATACAATTCAACTATTCTGGTCATCCAGACGGAGGGAAGATTTCTAACTTTCTTCTTGAAAAGTCACGAGTGGTAAATTTGAACAAACAAGAGCGTAATTATCATGTTTTCTATCAGCTGCTTGCGGGCTGCCCTCAGGACAAATATGACGACTATGGTATTGAAGATCCAAAACCTGAGTCATATTACTACCTGAATCAAACTGGTGTGTATAGCGTAGATGGAACAAACGATGCTGAGGACTACAAGGATTTAGTGCAAGCTATGTCTACTATTGGCTTCGATTCTACAATCCAGGCGACTATTCATAGGTTGACCTTGGCCATTTTACAAATTGGCAATGTGCAGTTCAAGGAAGAAAATAACGTGGCAGCGCCTGTTAGTGACGATTCAATAACATTACCAGCCAAATTGCTGGGAGTGGACAAGGACCTTCTAAAAGAGAAAATGATTAGCAATATTATGGAAACACGTTGGGGAGGCAAAGTGGAAGTTACAAAGAAAACTAATAATGCCGATCAGGCTGTGCAGGCACGTGATGCCCTTGCAAAGGCGTTGTTTTCACAGATTTTTGATTATCTCGTTCAGGGGGTAAACGATGCGATGCAGAAGGATAAAGAAGAGATGTCTATTGGTGTCTTAGACATCTATGGATTTGAAATTTTTGAGCACAATCAGTTTGAGCAATTTGCCATCAACTTTGTCAACGAGAAGCTGCAGCAGATTTTCATCGAGCTCACCCTAAAACTGGAGCAGTCTCAGGCTGCCGCGTTAATCGATAAGATTATGACATGTACGCCACATTATGTTCGATGCATCAAACCAACTGAATCAAAGCTACCACTGGACTGGGATAACCAAAGGGTTCTTCACCAGATCACTTACCTAGGGCTGAAGGAGAATATTCGAGTGAGAAGAGCTGGTTTTGCATTTCGCCGACAATTTGAAATTATTATTCAGAGGTTTGGAATAATTTCTCCTCAAATTGCTCAGGGGTGGACTGGTGATCCGGCGGAAGCTTGTCGAATCATAATGAGCGATGCTGGAATCGATCCTTCGAAATGGCAAGCAGGAAAAACAAAATTGTTTCTTAGAGAACCAAAGACGCTAAATGAACTAGAGGAACTGAAAAACAGTATTTTGGAGAAATATGTCCTCGCTATTCAAAGAAGGTACCGAGCTTACAGACTGCGGAAACGATTCAAACTAATCCGAAAAGGTGTCGTTGTCATTCAGAGATCATACCGGTGTTACAAGGATCGCCGTGCTCTTCAAAAATTGATTGCAATTAAAAAACTATCCCAAGGTGTTGATGTGCTGGGCGATAGAAAGCAGAGGAGAGACTCTTGGGACATGGGTTCCAAAGGAGATTATGTGGACTTCCCGAACAACACGCTGCTACAGGAAGTGATACGTAAGATGGGAAATCCAAAAAAAGAATGTCTCGACATTCTTAAAAGATTAAGTTTACAAACTAACTCTCAGGCTGCCGCGCTAATCGATAAGATTATGACATGTACGCCACATTACGTTCGATGCATCAAACCAACTGAATCCAAGCTACCACTGGACTGGGATAACCAAAGGTTTGGAATAATTTCTCCTCAAATTGCTCAGGGGTGGACTGGTGATTCGGCGGAAGCTTGTCGAATCATAATGAGCGATGCTGGAATCGATCCTTCGAAATGGCAAGCAGGAAAAACAAAATTGTTTCTTAGAGAACCAAAGACGCTAAATGAACTAGAGGAACTGAAAAACAGTATTTTGGAGAAATATGTCCTCGCTATTCAAAGAAGGTACCGAGCTTACAGACTGCGGAAACGCTTCAAACTAATCCAAAAAGGTGTCATTGTCATTCAGAGATCATACCGGTGTTACAAGGATCGCCGTGCTCTTCAAAAATTGATTGCAATTAAAAAACTATCCCAAGGTGTTGATGTGCTGGGCGATAGAAAGCAGAGGAGAGACTCTTGGGACATGGGTTCCAAAGGAGATTATGTGGACTTCCCGAACAACACGCTGCTACAGGAAGTGATACCTGAGTCCAGGGTGGAGTTTGCAGCTAGGATCGTGAAATATTCTCGCCATGGACAGGAGCAAAGCAGATATTTAATTTTGACATTAACGTCTTTGTACTTCATTGGTCAGTGTAACACTGGTGGAGGATTAAAGGTGAAAAGAAGGCTGTCGATGAAAGAAATAAATTCTGTCACGGTTAGCCCCAATGATGATTCTTTCTTTGTTCTTCACGCTAAGGATCATGATAACATCTTAGACTGTAAAATGCTCCCTGAATTTCTCAACAAACTAGCGGTTCTGTTTCAAGTGGAGCGAGACTCAGAATTACCGGTTAATGTAACCGACGGAACTGATTTTCAGATTAAAGGAGGGGACACACGCTATATTGAGTTTTCTAAGACAGGAAGCTCAAGGCTCACTGTGTCTCCATCTAAGGGGACATTTACTGTTGCTGCAGGAATAGGAAGAGACAATTTCCTTGAAGAAACAGATGACATTCCCAATGCGGGAGTAGAGAAACGGACGAGTGTTAATCTTCTTGTTGACAAAGTTGCACGCAAACTAAGTTACTCATACAGTGTGCACGCACCGGATCCAAAGGCATTCACAGCTGTAGTTAAAGCGATATTTGGACCCTCTGGCGGGGGACTGCAATGCAAAGGAGTGTTAGTAGAGCTCTGTGAAGGATCGCTTTCCACACAAACCAAGGAAGTTTGTATTCAGCTGTGCAAGAATAAGACTGACGTTGTTCCTCTTGCCGGGAGTGAGACGATCATTAGTCGTGTAGTGGAACTTAGTCCTCGTGGTAAGCCCCTGACTAAAAGAGCAACATTGACCTTACCCCTTGAATGTGCTACCTGTGAAGAATCTAAGATATTTATGCGCTGGACACCAAGTCATTCAGGAGAGAGAGCTAATTGGCAAGATGTTCTTCCATCTACTAACCCAGAAAATGAGGAAGGTATTACCTTGGAGGTGACATCACAGAAAGCAAGAATTAGAACCAAAGTGTTTGGCATCTTTTGTGTCATTACCACAGACGAAATTAAGGGTGTGCTGCCAACCACCAGCCACACTATTAAAGGGTTTGTCCTCAGCTCAATAAGCGTCCTGAAGTCATTTACCAGCGGCTCAGCGATGTCTAATGAACTAATTAAGAGCAGTTCTAGTAAGCagcaaaatgccaaatgcaaaagcaacacatcagcatcaagaaagcaaagtgaagatcaaagacgaaaatCCTCAGCTGCTAAAGTTCCACCCACGACGTCATGGAGTTCTGGTCCATCGCCATCTCCCCCCGCAGCAGCTTCCGGGTCACCACCACCTCCACCACCAGTAGCTTCCGGTCCACCACCACCTCCCCCGCCTGCAGCTTCCGGTCCACCACCTCCTCCCCCGCCTGCAGCTTCCGGTCCACCACCTCCTCCCCCGCCAGCAGCTTCTGCTCCACCGCCACAAGCAGAAGCTTCCGATCCACCACCCCCGCCAGCTGAAGGATCAGGAGGACCTCCACCTCCACCGCCTCCACCTCCTCCACCTCCAATGGCATCATCTGGCAAAACCTCTGCTGCTTCAGGAGAAGACAACTCATTTGCTGCTCTTTTGCAAAAACGTGCGGCAAACGCTACTTCTTGA

Transcript

amic_s0071.g33.t2

TGTAATTTTTCTTTAGCTTGTTTTTCTTTGTACTCGTAAGAAAATTGTCAAATTCCACATTTCCTCATATTCATGTCTTTTAATGTCTCAGCCAATATGGCCGAAAGTGACGTGGACGATATGGTCGAACTCGAAGAGATCTCGGAGAAAGCCATAGCGGCAAATCTGTGTACGCGACTTAAGAGGGAAACAATTTATACGTATATTGGCCGCGTGTTAATTGCTCTAAACCCTTTTAAACTGCTCCATATCTATGGTCCAGATGCTATCGACTTCTATCGCGGTATTGATCCAGAAGATGATTTTGATTCACCTCAACAAGATGACCGTGCCACCCGCTGTAATACAGCACAAATGCCATCAGAAATACTAGAAAATAGACGAAGAAGTTCTCAAGTCGAAGGTGGCCCTGTCGCACCGAGTGTACCTGAACTTTATAAGAATTGGAAGGGACCCAAGCCTCCTCATTTGTACGCTCTTACCAACACAATGTACCACAACATGATGATGGAACATGAAAATCAGTGTGTCATTATCAGTGGGGAGAGTGGTGCTGGCAAAACAGTATCTGCCAAACATATAATGAACTTCATAGCAAAAGCATCTGGGAAAGGATCAGACAAAGTTGAGCACATCAAAAACATCATTATTCAATCCAATCCGCTGCTGGAAGCTTTTGGCAACGCCAAGACTGTCAGAAACAACAATTCCAGCAGATTTGGAAAATTTATGGAAATACAATTCAACTATTCTGGTCATCCAGACGGAGGGAAGATTTCTAACTTTCTTCTTGAAAAGTCACGAGTGGTAAATTTGAACAAACAAGAGCGTAATTATCATGTTTTCTATCAGCTGCTTGCGGGCTGCCCTCAGGACAAATATGACGACTATGGTATTGAAGATCCAAAACCTGAGTCATATTACTACCTGAATCAAACTGGTGTGTATAGCGTAGATGGAACAAACGATGCTGAGGACTACAAGGATTTAGTGCAAGCTATGTCTACTATTGGCTTCGATTCTACAATCCAGGCGACTATTCATAGGTTGACCTTGGCCATTTTACAAATTGGCAATGTGCAGTTCAAGGAAGAAAATAACGTGGCAGCGCCTGTTAGTGACGATTCAATAACATTACCAGCCAAATTGCTGGGAGTGGACAAGGACCTTCTAAAAGAGAAAATGATTAGCAATATTATGGAAACACGTTGGGGAGGCAAAGTGGAAGTTACAAAGAAAACTAATAATGCCGATCAGGCTGTGCAGGCACGTGATGCCCTTGCAAAGGCGTTGTTTTCACAGATTTTTGATTATCTCGTTCAGGGGGTAAACGATGCGATGCAGAAGGATAAAGAAGAGATGTCTATTGGTGTCTTAGACATCTATGGATTTGAAATTTTTGAGCACAATCAGTTTGAGCAATTTGCCATCAACTTTGTCAACGAGAAGCTGCAGCAGATTTTCATCGAGCTCACCCTAAAACTGGAGCAGTCTCAGGCTGCCGCGTTAATCGATAAGATTATGACATGTACGCCACATTATGTTCGATGCATCAAACCAACTGAATCAAAGCTACCACTGGACTGGGATAACCAAAGGGTTCTTCACCAGATCACTTACCTAGGGCTGAAGGAGAATATTCGAGTGAGAAGAGCTGGTTTTGCATTTCGCCGACAATTTGAAATTATTATTCAGAGGTTTGGAATAATTTCTCCTCAAATTGCTCAGGGGTGGACTGGTGATCCGGCGGAAGCTTGTCGAATCATAATGAGCGATGCTGGAATCGATCCTTCGAAATGGCAAGCAGGAAAAACAAAATTGTTTCTTAGAGAACCAAAGACGCTAAATGAACTAGAGGAACTGAAAAACAGTATTTTGGAGAAATATGTCCTCGCTATTCAAAGAAGGTACCGAGCTTACAGACTGCGGAAACGATTCAAACTAATCCGAAAAGGTGTCGTTGTCATTCAGAGATCATACCGGTGTTACAAGGATCGCCGTGCTCTTCAAAAATTGATTGCAATTAAAAAACTATCCCAAGGTGTTGATGTGCTGGGCGATAGAAAGCAGAGGAGAGACTCTTGGGACATGGGTTCCAAAGGAGATTATGTGGACTTCCCGAACAACACGCTGCTACAGGAAGTGATACGTAAGATGGGAAATCCAAAAAAAGAATGTCTCGACATTCTTAAAAGATTAAGTTTACAAACTAACTCTCAGGCTGCCGCGCTAATCGATAAGATTATGACATGTACGCCACATTACGTTCGATGCATCAAACCAACTGAATCCAAGCTACCACTGGACTGGGATAACCAAAGGTTTGGAATAATTTCTCCTCAAATTGCTCAGGGGTGGACTGGTGATTCGGCGGAAGCTTGTCGAATCATAATGAGCGATGCTGGAATCGATCCTTCGAAATGGCAAGCAGGAAAAACAAAATTGTTTCTTAGAGAACCAAAGACGCTAAATGAACTAGAGGAACTGAAAAACAGTATTTTGGAGAAATATGTCCTCGCTATTCAAAGAAGGTACCGAGCTTACAGACTGCGGAAACGCTTCAAACTAATCCAAAAAGGTGTCATTGTCATTCAGAGATCATACCGGTGTTACAAGGATCGCCGTGCTCTTCAAAAATTGATTGCAATTAAAAAACTATCCCAAGGTGTTGATGTGCTGGGCGATAGAAAGCAGAGGAGAGACTCTTGGGACATGGGTTCCAAAGGAGATTATGTGGACTTCCCGAACAACACGCTGCTACAGGAAGTGATACCTGAGTCCAGGGTGGAGTTTGCAGCTAGGATCGTGAAATATTCTCGCCATGGACAGGAGCAAAGCAGATATTTAATTTTGACATTAACGTCTTTGTACTTCATTGGTCAGTGTAACACTGGTGGAGGATTAAAGGTGAAAAGAAGGCTGTCGATGAAAGAAATAAATTCTGTCACGGTTAGCCCCAATGATGATTCTTTCTTTGTTCTTCACGCTAAGGATCATGATAACATCTTAGACTGTAAAATGCTCCCTGAATTTCTCAACAAACTAGCGGTTCTGTTTCAAGTGGAGCGAGACTCAGAATTACCGGTTAATGTAACCGACGGAACTGATTTTCAGATTAAAGGAGGGGACACACGCTATATTGAGTTTTCTAAGACAGGAAGCTCAAGGCTCACTGTGTCTCCATCTAAGGGGACATTTACTGTTGCTGCAGGAATAGGAAGAGACAATTTCCTTGAAGAAACAGATGACATTCCCAATGCGGGAGTAGAGAAACGGACGAGTGTTAATCTTCTTGTTGACAAAGTTGCACGCAAACTAAGTTACTCATACAGTGTGCACGCACCGGATCCAAAGGCATTCACAGCTGTAGTTAAAGCGATATTTGGACCCTCTGGCGGGGGACTGCAATGCAAAGGAGTGTTAGTAGAGCTCTGTGAAGGATCGCTTTCCACACAAACCAAGGAAGTTTGTATTCAGCTGTGCAAGAATAAGACTGACGTTGTTCCTCTTGCCGGGAGTGAGACGATCATTAGTCGTGTAGTGGAACTTAGTCCTCGTGGTAAGCCCCTGACTAAAAGAGCAACATTGACCTTACCCCTTGAATGTGCTACCTGTGAAGAATCTAAGATATTTATGCGCTGGACACCAAGTCATTCAGGAGAGAGAGCTAATTGGCAAGATGTTCTTCCATCTACTAACCCAGAAAATGAGGAAGGTATTACCTTGGAGGTGACATCACAGAAAGCAAGAATTAGAACCAAAGTGTTTGGCATCTTTTGTGTCATTACCACAGACGAAATTAAGGGTGTGCTGCCAACCACCAGCCACACTATTAAAGGGTTTGTCCTCAGCTCAATAAGCGTCCTGAAGTCATTTACCAGCGGCTCAGCGATGTCTAATGAACTAATTAAGAGCAGTTCTAGTAAGCagcaaaatgccaaatgcaaaagcaacacatcagcatcaagaaagcaaagtgaagatcaaagacgaaaatCCTCAGCTGCTAAAGTTCCACCCACGACGTCATGGAGTTCTGGTCCATCGCCATCTCCCCCCGCAGCAGCTTCCGGGTCACCACCACCTCCACCACCAGTAGCTTCCGGTCCACCACCACCTCCCCCGCCTGCAGCTTCCGGTCCACCACCTCCTCCCCCGCCTGCAGCTTCCGGTCCACCACCTCCTCCCCCGCCAGCAGCTTCTGCTCCACCGCCACAAGCAGAAGCTTCCGATCCACCACCCCCGCCAGCTGAAGGATCAGGAGGACCTCCACCTCCACCGCCTCCACCTCCTCCACCTCCAATGGCATCATCTGGCAAAACCTCTGCTGCTTCAGGAGAAGACAACTCATTTGCTGCTCTTTTGCAAAAACGTGCGGCAAACGCTACTTCTTGAAGCAGTTGTGTAAAGTGTGCCACAAAAAAACTGTCTCAACGTATTTGTTTTCCAACGGTCGCTTATCAACGTCCTTTAGTTCCTTCCGTCATAAAGTAAAAGGTTGTTGCCAGGCGAATAAACGAAGCTCGGATGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O00160	Unconventional myosin-If OS=Homo sapiens OX=9606 GN=MYO1F PE=1 SV=3
P70248	Unconventional myosin-If OS=Mus musculus OX=10090 GN=Myo1f PE=1 SV=1
E9Q634	Unconventional myosin-Ie OS=Mus musculus OX=10090 GN=Myo1e PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000485 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06017 all species →	Myosin_TH1	Unconventional myosin tail, actin- and lipid-binding	Domain	Interproscan
PF00791 all species →	ZU5	ZU5 domain	Family	Interproscan
PF00612 all species →	IQ	IQ calmodulin-binding motif	Motif	Interproscan
PF00063 all species →	Myosin_head	Myosin head (motor domain)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan
IPR010926 all species →	Domain	Class I myosin tail homology domain	Interproscan
IPR001609 all species →	Domain	Myosin head, motor domain	Interproscan
IPR000048 all species →	Binding_site	IQ motif, EF-hand binding site	Interproscan
IPR000906 all species →	Domain	ZU5 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13140 all species →	MYOSIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003774 all species →	Molecular Function	cytoskeletal motor activity	Interproscan
GO:0016459 all species →	Cellular Component	myosin complex	Interproscan
GO:0000146 all species →	Molecular Function	microfilament motor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007015 all species →	Biological Process	actin filament organization	Interproscan
GO:0015629 all species →	Cellular Component	actin cytoskeleton	Interproscan
GO:0030050 all species →	Biological Process	vesicle transport along actin filament	Interproscan
GO:0031982 all species →	Cellular Component	vesicle	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10356	MYO1; myosin I	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.