Gene detail

Detailed information of amic_s0071.g46.t1 in Acropora microphthalma

Genomic Location: sc0000071_pilon:752697...762740
NR annotation: XP_044170056.1, uncharacterized protein LOC114963152 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0071.g46.t1

AAGACCAAGAGTTATTGACAGACCAACAATTATTCTCCATATTTTGTCTCTATGGCTTCTAGTCTCCTAATTTACAATGCTTCAAAGAATCAGTTTAAATGGCTTGGCACGCTGGAAGACCTGCTCGACCTTTTATCATCACAATTAGGAATCGATAGCAAAGACTTCCAAGTTCAAGATAATGGAACTTGTTTGGTGCTTAAAGTTGGACACATCACCTGCAACTTTTATACCAAAGCAAAAACTCTCCAGATTCAAGGTAAAGAGAATGCAGAGAAGCTGAAATTAAATTTAATTGAACTGGCTAAAGAGAAATTACCCGAGAAACTATTCGACGAGGTGTCTTGGCCGGAAAGCGAGAAGCAAAGTGGCGATGAAGTCATCGAACTTGAGTCTGCTGCCGCAAAAGATCCTAGCCGCTGTTGTAATAATTGTAGTGATATGCTAGAAATGTTTCTGCTCCTTAGAAAGGATATACGCGATTTAAAAGAACAAGTCACCGATTTTATTTCCAAAGAAAGTTGCATTCATGCCGATGTCTGTTCACACCCTGATGCAGACATTAATAATGAACTTCGCCATCAACAAGAGTTGAACGAAAAATCTTCAAACAATTTGCATCTTGAAAGAGAAGAAAAACAACACCTTCTTCAAGTGAACAAAGACTACGCAAACAAACTTCGATTGGCCGAAGAAGAACAAAAGAGCCTCATTACCTCCATTCACCTACTAACAAAAGAATTAGAAACTCATAGGGATTCAGGTCATCAAAAGGCTGCCCCACCACAGGTCTTTTCCAGCAAGAGCAAAGTTAAGCTGGCTCTTAATTCCTCGTCTTGGTGTAAAGTACTTTCACGGAAACTAAGTGTTACAGAGGAGAAGTCATCCTCAAACTTGGCTGTACAACATGTAGCTGACGATTCCTCAGATGAGGAACATTGGACTGCAGAAGACATTGAAGAAATCATGCCAAAGGCAAAAAGTGATAATACCACTAGAATGCTACAGCATCTACCTCCAAAATGCACAAGTGTTCTTGGTAAAGAGGAGAAAGAAATCAAGGCCAAAGAAATCAGCCACCTGAGAAAAGAAATCATTCCACTGACAGAAGATATCATTAGAGCAATGAATCCAGACCCAAGGATTTCCCTTGGACACCGAGAAGTCAGTTATAGCCAGCCGACGTTCGGTTATCCATTCGATGCCACCTGTTCAACCAGCTTTCCATCGTCCAGTTCACTTGGAGAATCCGATCAACTTGATAGTCAGTCTCCCAGTCAGTCCAGCCAGTCCACAGCCAAGAAATACAACAAGTGGACAAGCGAGCAACAGCGCTACTTGGTACAGTTATGGGCAGACAAGCAGGACTTGATCAACAGCAAAGATTCAAGAAATGCTTGGCATGAGATTGCTGAGGCCATCAATAGTAAGTTCAAAACAAACAAGACAGTGGACAAGTTTTTACGAAAAATAAAGTACTTAATTGATGGCTATAAAGAAAAAAAAGAATGGAACAGAAATCAGACAGGTGGTAACTTGCGAAAGTCTATTTTTTATGATGAAATTGATGCCGTTCTTGGTTGCCGCGATGCCGTGACCCTGAAACACGTGCAAGAAGCAGAGGATACTTCATTGGCCATATCTTCAGCAGATAGCGACAGCCCCTTAAACCTTTCTGCTGAGTCCAGCAGGGAAGAAGCGCTCGACCCAAAGGAAACTGCCGCCCCACCGAAATCGCGCTTGGAACGAAAGAAAGGCCAGGGCAAAAGGAAACGGAAAGTAAACGATGATGAAGATGGAGATGGGGACGAGCACTTCAGGCAGGCTTTTGCTGAGATTAAATCCCAAGGAGAACGCGTCGCATCCAGCATGGAGAAGATGCAAGAGATGCAAATGCGACAAATGGACTGCATGAACCAATTTATGGGAGATTTTCTCAAAGCATTTAAGGACAAATAGTTCAAATGCAGTTTGATAGGCATAATAATATTCAAGTGTTGTGTTACTGTTTCCGTTCAGGTACGGTATCGAAAAAGTTATAATAAAAGTTTGAAAAGGAC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000426 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13837 all species →	Myb_DNA-bind_4	Myb/SANT-like DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044823 all species →	Family	Trihelix transcription factor ASIL1/2-like	Interproscan
IPR044822 all species →	Domain	Myb/SANT-like DNA-binding domain 4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31307 all species →	TRIHELIX TRANSCRIPTION FACTOR ASIL2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000976 all species →	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0071.g46.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.