Gene detail

Detailed information of amic_s0072.g124.t1 in Acropora microphthalma

Genomic Location: sc0000072_pilon:1509933...1530371
NR annotation: XP_044165633.1, uncharacterized protein LOC122949631 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0072.g124.t1

ATGGTGGGGTTGAAAACCACTACAGCAGAGGGCCTACTATTTATCATTGGTCAAATATGGCTGAGTTATGCAATTGATACCAGTGACCTAGAAGGATGTGAGTGCAACATTTTAGGTGCTTGTGATGCGAATGGAAAGCGAAAACAAGACTGGAACAAATACCTACCGACAGGTGTGGACAAGTTCGGATACTTCGTTCAAAACGTCCAAAACCTTCGTTATGTGTGCGAAGATTCCGAATCTCCAGCAATCTTGTTTGACAACAACAGCAAAATTCCTCTTTATTGTGCTATTGTTATGAATGAGCAACAACTTAACGCAGAAGGAAAACAAAAACGGAAAAAGCGGTTTCTCTTGAGCAAAAAAATAGCAAAGGATAACCAACAAAGTAATAAGGATTATCGGGGCTCTTCCAAACGAGAACTTTGCTTTAAAAAAGCAGCACAGCCAGCCAAAGCGGTTGCGAGGAAGTGGTTGTCTAAGAAAGAGGCCACCTGCGCTCCTAAAGGAACTGTCAAAGTGAACAATTGTTTCGCTGTCGAAGATTTGAAGACAGAAGTACATAGAGGGCACCTGTGCGCGTCGCAATACGGAAGAGGCAACCAGAAGAGAATGGATGCGACGAATACCTACACAAACGTTGTTCCGCAGTTTGGAGCCTTTAATTCGGGTCCATGGCAACAATGCAAGACCCACCTTGTCAGCGTTATGTCTCGCCTTAACCTCTTTGGAGTAAAGAAGGAGAAGTATGTTGGTTCTGACCCCCGCATCGTGACACCAGTCTACGACAATATCCCTTTTCAGAAGTATGTCAAATTTTGGAAAGACTCATTGAAAATGATAGGAAAAGACGGTTGGTCAACTTTTTCACATCTGTTCTTTCACCCTGATGGTGAATTGTGCGGAGTGAATGACTTTTTCGTTAAAGCCCCGCCTCCTTCTTCGAGCCTTACCCAGCAGTGGGAGTGGGTAGCTCAAGCTACCGTAATCAGTAGGAAAGATTGGAGTTCTTTCAAGTTCCTGTTCTTTGATCCGGATGGAATGCTTTATGGAGTCCACGACGAAAAGCTATACAAAGGACAGATCCCATCGAATTCTGATGAGAATTGGCTGGAAACCGCTCAACTTGTAGGAGAAAGCGGATGGGCCAGCTTCGATTTTCTTTTTTTTGACTCAATGGGAATCTTACATGGTGTCGAAAATGGCAAACTTCATAAGCGGAGCCCTCCAACAGATACAGGAGATGACTGGTTAGGAACCTCAACCCTTATCGGTACCAGCGGTTGGAGTGATTTCCACAAACTCTTCTTCATGTTCAATGGCGAGCTATATGGCGTCCATGAGGACAGCTTTTACAAAGGTTCGCCACCAAGTTCGGCCAGATCGACCAGTGATCAATGGATTGCTTCCTCAACGCTGATTGGGGTGAGAATGGACGTTCAAGTGCAGGATTGTAGCAGTGACATTCGTTGGAAGAAAACGTTTCCTGATCTGGACTATAGTCTTCTCGGCTATGACATCATTTATGGAAATCCTCTTGCCAATGGGCGCGATCCTGGGCTCAGACACCAAATATTTAGCGCTGATTTTTCAAAGCCAACACAGTCTTCGGATTGTCGCTACGTTATTCCAGCTGGCCTTTTTGCTGTTTCCAGTGAGTCTTGTGACGTGTCGTTTGAATCCAAATTGGTGCGAAATAAACAGGAAATGAAGAATCACCTTGGCGCTCAAGCGAAAATAGAAGGTGGCGGTTGGGGATTTGAATTCTCTGCCAGTGCTAGTTATCAAAGGGATTCATCGGAGATGTCAAAGGGCGAGTTTTTGTACGTCATATCCCATGCTGAATGCCATAATTACTACAGTACGATTGACATAATGAACCCGCCCCCATTTCATCCCGGTTTTCTTGCTTGGACAAAAAAACTTTCCAATTCCAACGTCAGTGACGAGGAATTCCTCAAGTTTGTTGAATATTTTGGATCTCACTTCTTCACCGAAGTGACCTTCGGAGCAAAGTTTATCCAGAAACACAAGGTCAGCCAAAGTGCTTATGAAAAGTTAAAGAAAAGCAAAATAAGTGTTGAAGCCCAGGCCAGCTATTCAGGGATATTCAGCATCGGAGGAGGATTCTCATTCGATAAAGAACAAAGCGAAGCTGCATCAAATTTTTCAAAGAATGTCGAGACGACTACGTTTACTTTAGGATCGACGCCCCCGTCAAACGGCGATGCAATGACTTGGGCGTCTTCTGTCCAACAGAATCCCGTTCCCATGCTGTATTCACTCTCACAAATCGACACATTATTCACAGGGCAGTTTGCTAGCGGTTTTCCTCCGGAAGTGAATGTCGAAAGAGTAAGAAAAAAGCTTCAAAATATTTCGCGTCAGTATTGCCAAGCATTGCAAAAGAAAGGAACAGTTCACTCGTGTGAGCCCAAAGTTCACCTCGAGGCTTCAGGAATTGATATAACAGGAAAAGGTTACCGTTATCTAACTAAAGTAGAGAAGGCTGTGTGCGTTTCATTTTGTCTGCAAGATCCCGACTGCACTGCAATAACATACACCATTCTCCACCAATCTCAAGCAAGTTCTTTGTGCAAGTTTTACAGCGCAGTTGGCAAAAACGGTAGTGTTCACCTCAACCTGACAAAAAAAGACAACAGCGAAAAAACGTCAAATTTGGTCTTGTTTATCTCAAAAGTGCAAGATGTGCATCTATATCACGCCACCCTTGAGGGCTCTGCATATCACATGGAAAGTCAAACAACGTTCGGCCACTGCAACTCTACGTGTGCCAACGACCTGTTTTGCGACGTATTCAGCTTTTCGTACAACGGAATTTGCTCGTTGTATTCAGCGAGCGAAATCTCAAATATTGTCGTGGACGACGCATCCGAGGTCTCTTTTATTGCTTTACATTCTTTTGAAAATTAG

Transcript

amic_s0072.g124.t1

CGACACCATTAAATGAATCAGTTGTCATTCCACGCTCCAAAAGAATTGACAAGAAGCAATGGTGGGGTTGAAAACCACTACAGCAGAGGGCCTACTATTTATCATTGGTCAAATATGGCTGAGTTATGCAATTGATACCAGTGACCTAGAAGGATGTGAGTGCAACATTTTAGGTGCTTGTGATGCGAATGGAAAGCGAAAACAAGACTGGAACAAATACCTACCGACAGGTGTGGACAAGTTCGGATACTTCGTTCAAAACGTCCAAAACCTTCGTTATGTGTGCGAAGATTCCGAATCTCCAGCAATCTTGTTTGACAACAACAGCAAAATTCCTCTTTATTGTGCTATTGTTATGAATGAGCAACAACTTAACGCAGAAGGAAAACAAAAACGGAAAAAGCGGTTTCTCTTGAGCAAAAAAATAGCAAAGGATAACCAACAAAGTAATAAGGATTATCGGGGCTCTTCCAAACGAGAACTTTGCTTTAAAAAAGCAGCACAGCCAGCCAAAGCGGTTGCGAGGAAGTGGTTGTCTAAGAAAGAGGCCACCTGCGCTCCTAAAGGAACTGTCAAAGTGAACAATTGTTTCGCTGTCGAAGATTTGAAGACAGAAGTACATAGAGGGCACCTGTGCGCGTCGCAATACGGAAGAGGCAACCAGAAGAGAATGGATGCGACGAATACCTACACAAACGTTGTTCCGCAGTTTGGAGCCTTTAATTCGGGTCCATGGCAACAATGCAAGACCCACCTTGTCAGCGTTATGTCTCGCCTTAACCTCTTTGGAGTAAAGAAGGAGAAGTATGTTGGTTCTGACCCCCGCATCGTGACACCAGTCTACGACAATATCCCTTTTCAGAAGTATGTCAAATTTTGGAAAGACTCATTGAAAATGATAGGAAAAGACGGTTGGTCAACTTTTTCACATCTGTTCTTTCACCCTGATGGTGAATTGTGCGGAGTGAATGACTTTTTCGTTAAAGCCCCGCCTCCTTCTTCGAGCCTTACCCAGCAGTGGGAGTGGGTAGCTCAAGCTACCGTAATCAGTAGGAAAGATTGGAGTTCTTTCAAGTTCCTGTTCTTTGATCCGGATGGAATGCTTTATGGAGTCCACGACGAAAAGCTATACAAAGGACAGATCCCATCGAATTCTGATGAGAATTGGCTGGAAACCGCTCAACTTGTAGGAGAAAGCGGATGGGCCAGCTTCGATTTTCTTTTTTTTGACTCAATGGGAATCTTACATGGTGTCGAAAATGGCAAACTTCATAAGCGGAGCCCTCCAACAGATACAGGAGATGACTGGTTAGGAACCTCAACCCTTATCGGTACCAGCGGTTGGAGTGATTTCCACAAACTCTTCTTCATGTTCAATGGCGAGCTATATGGCGTCCATGAGGACAGCTTTTACAAAGGTTCGCCACCAAGTTCGGCCAGATCGACCAGTGATCAATGGATTGCTTCCTCAACGCTGATTGGGGTGAGAATGGACGTTCAAGTGCAGGATTGTAGCAGTGACATTCGTTGGAAGAAAACGTTTCCTGATCTGGACTATAGTCTTCTCGGCTATGACATCATTTATGGAAATCCTCTTGCCAATGGGCGCGATCCTGGGCTCAGACACCAAATATTTAGCGCTGATTTTTCAAAGCCAACACAGTCTTCGGATTGTCGCTACGTTATTCCAGCTGGCCTTTTTGCTGTTTCCAGTGAGTCTTGTGACGTGTCGTTTGAATCCAAATTGGTGCGAAATAAACAGGAAATGAAGAATCACCTTGGCGCTCAAGCGAAAATAGAAGGTGGCGGTTGGGGATTTGAATTCTCTGCCAGTGCTAGTTATCAAAGGGATTCATCGGAGATGTCAAAGGGCGAGTTTTTGTACGTCATATCCCATGCTGAATGCCATAATTACTACAGTACGATTGACATAATGAACCCGCCCCCATTTCATCCCGGTTTTCTTGCTTGGACAAAAAAACTTTCCAATTCCAACGTCAGTGACGAGGAATTCCTCAAGTTTGTTGAATATTTTGGATCTCACTTCTTCACCGAAGTGACCTTCGGAGCAAAGTTTATCCAGAAACACAAGGTCAGCCAAAGTGCTTATGAAAAGTTAAAGAAAAGCAAAATAAGTGTTGAAGCCCAGGCCAGCTATTCAGGGATATTCAGCATCGGAGGAGGATTCTCATTCGATAAAGAACAAAGCGAAGCTGCATCAAATTTTTCAAAGAATGTCGAGACGACTACGTTTACTTTAGGATCGACGCCCCCGTCAAACGGCGATGCAATGACTTGGGCGTCTTCTGTCCAACAGAATCCCGTTCCCATGCTGTATTCACTCTCACAAATCGACACATTATTCACAGGGCAGTTTGCTAGCGGTTTTCCTCCGGAAGTGAATGTCGAAAGAGTAAGAAAAAAGCTTCAAAATATTTCGCGTCAGTATTGCCAAGCATTGCAAAAGAAAGGAACAGTTCACTCGTGTGAGCCCAAAGTTCACCTCGAGGCTTCAGGAATTGATATAACAGGAAAAGGTTACCGTTATCTAACTAAAGTAGAGAAGGCTGTGTGCGTTTCATTTTGTCTGCAAGATCCCGACTGCACTGCAATAACATACACCATTCTCCACCAATCTCAAGCAAGTTCTTTGTGCAAGTTTTACAGCGCAGTTGGCAAAAACGGTAGTGTTCACCTCAACCTGACAAAAAAAGACAACAGCGAAAAAACGTCAAATTTGGTCTTGTTTATCTCAAAAGTGCAAGATGTGCATCTATATCACGCCACCCTTGAGGGCTCTGCATATCACATGGAAAGTCAAACAACGTTCGGCCACTGCAACTCTACGTGTGCCAACGACCTGTTTTGCGACGTATTCAGCTTTTCGTACAACGGAATTTGCTCGTTGTATTCAGCGAGCGAAATCTCAAATATTGTCGTGGACGACGCATCCGAGGTCTCTTTTATTGCTTTACATTCTTTTGAAAATTAGTTTAAAACATTTGATAACTAGACATTCACTTTCATGACACCTTAGCGACAAATTGCCAGCTGTGATGCCACGGAAATAATAATTGTTTCTTTTGCAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000911 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01823 all species →	MACPF	MAC/Perforin domain	Domain	Interproscan
PF01223 all species →	Endonuclease_NS	DNA/RNA non-specific endonuclease	Domain	Interproscan
PF14517 all species →	Tachylectin	Tachylectin	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020864 all species →	Domain	Membrane attack complex component/perforin (MACPF) domain	Interproscan
IPR001604 all species →	Domain	DNA/RNA non-specific endonuclease	Interproscan
IPR044925 all species →	Homologous_superfamily	His-Me finger superfamily	Interproscan
IPR036813 all species →	Homologous_superfamily	Tachylectin 2 superfamily	Interproscan
IPR044929 all species →	Homologous_superfamily	DNA/RNA non-specific endonuclease superfamily	Interproscan
IPR003609 all species →	Domain	PAN/Apple domain	Interproscan
IPR023294 all species →	Domain	Tachylectin 2	Interproscan
IPR040255 all species →	Family	Non-specific endonuclease	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13966 all species →	ENDONUCLEASE RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0004519 all species →	Molecular Function	endonuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0072.g124.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.