Gene detail

Detailed information of amic_s0072.g19.t1 in Acropora microphthalma

Genomic Location: sc0000072_pilon:298366...324650
NR annotation: XP_044175031.1, LOW QUALITY PROTEIN: exocyst complex component 2-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0072.g19.t1

ATGAGGCCACCTCCAGTAGTGACAGGTATTTCTCCAGCTGAAGGACCGCCTGGAACGAACGTCATAATTCGAGGAGAGCATCTCGGAGTTAATGCGAAAGATGTAACAGGGCTGACAATATGTGGTGCCAACTGTCTTCTTTCAGCTGACTATAAGTCAGCCAGTAAGATCATTGCACACACTGGCCAATCTCAGCCTGGCAAGGGAGATGTGATTGTTATCACTCGGTCCGGTGGAGTGGGAAGCTGTACTTTTCGAAGTGTTAGCTTGGTTCCAGATCCCCTGAAGGAGAGTGCTGTTTGGTTGGAGGAGATGGATCCCGATGAATTGAGAGTAAGGTCTGGCTCTGTAACACCAGTTTCACCTCAAATAAACACTAGCAATGATCCTCTGGGAACAGGGGTTGACATTTTTAGGTTTTTGACTTTAAAAAGTGGCCTGAACCATCTGAAGCAAGAGGAAAACAGGCGCGCAGCAGATCCTTTAGTTTTTGTTAAAGAGAATGTTGCTACATTTTTGGATGCAGTAGACACTTTGAAGAGTGTCCAGCGAGATATGTTACGTGATGAGAGCAGCTGTGATGGTGGATCTATTGTTGAGAAACTAGAATCATTTGTCCAAGGTGCAAGCAAAAACGCCGAGGGGTTGTTTCAAGATGTCTTAGCTCGTAAAGATGATGCTGACAGAACAAGAAATGCACTTAATGTCCTACAAAGGTTCAGATTTCTCTTTAGCCTTCCACAGAGTATTGAGAGGAATATTCAGTTGGGGGAATATGAGATGGTCATAAGTGATTATGGAAGAGCCAAGTCATTATTTGCTGGAACAGACATAAAGATTTTCAAAAGAGTGCTTCAAGAAGTTGAAACTAAAATAGAGGGCTTCCGTCAGCACCTTAAGCAAAAACTAGCTGAACTGCCATCACCCCTGGAAGACCAGAAGAAGGTTATAAGATATCTCGTGGAATTGGACTACCAAGGGGACCCTGCTTGGGAATGTATTGTCAATCAAAAGGACTGGCTTCACAAATTACTGATCAGCTGTCAGGAAGATCATAAAGCCAAGGAATTTGTTCCATTACTTGAAGTTGATGCCTCCAAGACTGATTTAGATCCCAGAGCATCTAGAAGTGTCAGCTCCTTGGGTTCTTATCACAGTGAATCCCTTGGTATTTTGGGAGTGACATCACCACCCAGTAAGACATCATTAGTTGAACACAACGTGAAAGGTGGAAGTTGTGTGCCGCAGAGAGTGTCATTTGTGGAAGAATTGTCCGAATTATTGACAGAGAGTTTGCCAGATCTTTGGAAACTCGGCCAGGCGTATTTTAATAGAGCTCTGGTAACCGATGCCAGCGGAATGTCAAAACAACTCAAACCCACTGCGCAGAAGCAGAAGACGTTTGAGGAAATGGTGCATGACGTGGCATCGTTGTATGCGGATCTTATTAAAGCAGCATTTTTCCCAAACTCAGCGGCAGCAGTCAGTGTTACCAGTAATGATAAACAAAGCTGTTGGCGCAGTCCTGTTGATGGGTTAGGTTCATGGCTCCCTTCCTGTGTTCGTTATGTCAGGTCCTGTATGGATTCCCTTCAAAAGCTTTCTCTGCCAGCAGAAACTTTGGAACGTGTTAAACAGCTAACTGGTGATCTCAGATTACTCTGTGCTAAAGAGGTGTTTAAAGAAGCTATTGAAGATATCAAGTCTTTACATTGCAATGAGATCTGGTCTTTGGACTCCCAGCCTGGTGTTGGTCGGGTAACAAGCTTGCCGTTGATGTTTGAAAATATTGTCACCGAAACGCTTCATATGCTGCGTGAAATGGCGATGAATGCGGAGACAGACAAGAGAACGGATCTGCAACTAAAGACAAGTGCCGTGGATCTTTTTAAGGACTTGTTCCAGGCGTTTAACGAGTGTCTTCAGCATTTGGCTTTCCAACCTGATCAAGAATCCGATAAAGCTTCCATCAGATCTGTTCCTCAGGAGGGCTTCGCGTCCGTTAGTTCTCAAGATAACCTTGAGAGATCTTCCTTATCGATGGCAGAGGACAACACACCCGTCATTGATGAAAGGCTGTTGATTGTGCTAAACAATTGTCGTTATGTGCGAAATCATGTTCTTCCCAAGCTAGTGGAGAGTTTTAGAATTAACGACTACCCCATCAGTGACAAGTTGAGGAAGGATCTCAGCAGCGACTTGAGTGATTTAGAAGGGAAAATCTTTGACGCATATATTGAACAGAAAGCTGAACCGCTGATCGCATTAATAGAACCTGGTATGACAATCTGCGGCCCTAAATGGCACAACTGTCTTCCACCCACAGATGTACGCAGCTACGTCAAAGAGGTCATCATGAACTTGGTCACTGTTCATGCGCAAGTGTTTGCAGTGTCTGGAGTGTTACTAACTCAAGTGGTGACTCGTTTATCCGATGTGCTAGCTGATGAATTTTGCAAGCAGATATCTTTGGTCCAAACATTTACTTCGACAGAAGCCGTCACGGCGCATTTGGAAGCCAGAGCAATCCAGGAAGCATTGGCAGCATATCTCACTCATCATGCCAGGGATTTATTCCAAGCCACCTTCAGTAAGGTACCTTCCATAACCAAAGATTCTGATAAGAGGTTAATAGAAGCTTTGATGGCGAAGTTCAAACGACGTATGCGCCTGCAGTTACTTTGCTTTGAAGTGGACATGGAGGAACTTTAA

Transcript

amic_s0072.g19.t1

TTTAAATGCACTCGCACCTTCCACTAACTTTTTCTCCAGGAAATACGGCTTAACCGGAAGTAGAAACCAACATAATTCGATTGTTTTTGTCCGTGATCGTCCAGTCCTTCATGAAAGAAACCAATATGGCGGCTAGGTGGAGGAAGTTGAAGGTATAAAATAGTTATTTATAAGTTGCATATACGGATGAATGTGGAAATTTAGATATGAGGCCACCTCCAGTAGTGACAGGTATTTCTCCAGCTGAAGGACCGCCTGGAACGAACGTCATAATTCGAGGAGAGCATCTCGGAGTTAATGCGAAAGATGTAACAGGGCTGACAATATGTGGTGCCAACTGTCTTCTTTCAGCTGACTATAAGTCAGCCAGTAAGATCATTGCACACACTGGCCAATCTCAGCCTGGCAAGGGAGATGTGATTGTTATCACTCGGTCCGGTGGAGTGGGAAGCTGTACTTTTCGAAGTGTTAGCTTGGTTCCAGATCCCCTGAAGGAGAGTGCTGTTTGGTTGGAGGAGATGGATCCCGATGAATTGAGAGTAAGGTCTGGCTCTGTAACACCAGTTTCACCTCAAATAAACACTAGCAATGATCCTCTGGGAACAGGGGTTGACATTTTTAGGTTTTTGACTTTAAAAAGTGGCCTGAACCATCTGAAGCAAGAGGAAAACAGGCGCGCAGCAGATCCTTTAGTTTTTGTTAAAGAGAATGTTGCTACATTTTTGGATGCAGTAGACACTTTGAAGAGTGTCCAGCGAGATATGTTACGTGATGAGAGCAGCTGTGATGGTGGATCTATTGTTGAGAAACTAGAATCATTTGTCCAAGGTGCAAGCAAAAACGCCGAGGGGTTGTTTCAAGATGTCTTAGCTCGTAAAGATGATGCTGACAGAACAAGAAATGCACTTAATGTCCTACAAAGGTTCAGATTTCTCTTTAGCCTTCCACAGAGTATTGAGAGGAATATTCAGTTGGGGGAATATGAGATGGTCATAAGTGATTATGGAAGAGCCAAGTCATTATTTGCTGGAACAGACATAAAGATTTTCAAAAGAGTGCTTCAAGAAGTTGAAACTAAAATAGAGGGCTTCCGTCAGCACCTTAAGCAAAAACTAGCTGAACTGCCATCACCCCTGGAAGACCAGAAGAAGGTTATAAGATATCTCGTGGAATTGGACTACCAAGGGGACCCTGCTTGGGAATGTATTGTCAATCAAAAGGACTGGCTTCACAAATTACTGATCAGCTGTCAGGAAGATCATAAAGCCAAGGAATTTGTTCCATTACTTGAAGTTGATGCCTCCAAGACTGATTTAGATCCCAGAGCATCTAGAAGTGTCAGCTCCTTGGGTTCTTATCACAGTGAATCCCTTGGTATTTTGGGAGTGACATCACCACCCAGTAAGACATCATTAGTTGAACACAACGTGAAAGGTGGAAGTTGTGTGCCGCAGAGAGTGTCATTTGTGGAAGAATTGTCCGAATTATTGACAGAGAGTTTGCCAGATCTTTGGAAACTCGGCCAGGCGTATTTTAATAGAGCTCTGGTAACCGATGCCAGCGGAATGTCAAAACAACTCAAACCCACTGCGCAGAAGCAGAAGACGTTTGAGGAAATGGTGCATGACGTGGCATCGTTGTATGCGGATCTTATTAAAGCAGCATTTTTCCCAAACTCAGCGGCAGCAGTCAGTGTTACCAGTAATGATAAACAAAGCTGTTGGCGCAGTCCTGTTGATGGGTTAGGTTCATGGCTCCCTTCCTGTGTTCGTTATGTCAGGTCCTGTATGGATTCCCTTCAAAAGCTTTCTCTGCCAGCAGAAACTTTGGAACGTGTTAAACAGCTAACTGGTGATCTCAGATTACTCTGTGCTAAAGAGGTGTTTAAAGAAGCTATTGAAGATATCAAGTCTTTACATTGCAATGAGATCTGGTCTTTGGACTCCCAGCCTGGTGTTGGTCGGGTAACAAGCTTGCCGTTGATGTTTGAAAATATTGTCACCGAAACGCTTCATATGCTGCGTGAAATGGCGATGAATGCGGAGACAGACAAGAGAACGGATCTGCAACTAAAGACAAGTGCCGTGGATCTTTTTAAGGACTTGTTCCAGGCGTTTAACGAGTGTCTTCAGCATTTGGCTTTCCAACCTGATCAAGAATCCGATAAAGCTTCCATCAGATCTGTTCCTCAGGAGGGCTTCGCGTCCGTTAGTTCTCAAGATAACCTTGAGAGATCTTCCTTATCGATGGCAGAGGACAACACACCCGTCATTGATGAAAGGCTGTTGATTGTGCTAAACAATTGTCGTTATGTGCGAAATCATGTTCTTCCCAAGCTAGTGGAGAGTTTTAGAATTAACGACTACCCCATCAGTGACAAGTTGAGGAAGGATCTCAGCAGCGACTTGAGTGATTTAGAAGGGAAAATCTTTGACGCATATATTGAACAGAAAGCTGAACCGCTGATCGCATTAATAGAACCTGGTATGACAATCTGCGGCCCTAAATGGCACAACTGTCTTCCACCCACAGATGTACGCAGCTACGTCAAAGAGGTCATCATGAACTTGGTCACTGTTCATGCGCAAGTGTTTGCAGTGTCTGGAGTGTTACTAACTCAAGTGGTGACTCGTTTATCCGATGTGCTAGCTGATGAATTTTGCAAGCAGATATCTTTGGTCCAAACATTTACTTCGACAGAAGCCGTCACGGCGCATTTGGAAGCCAGAGCAATCCAGGAAGCATTGGCAGCATATCTCACTCATCATGCCAGGGATTTATTCCAAGCCACCTTCAGTAAGGTACCTTCCATAACCAAAGATTCTGATAAGAGGTTAATAGAAGCTTTGATGGCGAAGTTCAAACGACGTATGCGCCTGCAGTTACTTTGCTTTGAAGTGGACATGGAGGAACTTTAACCAAATATAGTTTAAAGAACGTGAAAGAAAGAAAAATTCAGCGCTCTTATTACCAGAATATTTGAATTCCTTTTTTGCTCCTCAATAAATATCGGTTCTTGTCATCAATTTCGCACGTCTTTCATTAGTTGCCGGTGGGACTTAAGTAAGCATTTTGAAAAAAGGCAATAAAATAAGTGCGAAGCGAAGCACTGAGTGTTGAGTTGGTTTCTCTTTTGGCTGATATTCAGCATTAAGCGATAGAATCGATTGGTTTCACACCTTGTGACACGGGGTAGGAGAACCATTTCACTTTTCTAAAGACCATGATCGTTAGGTTATGAATAGTCTAGCCCAATCTGTAAGAGCTTCCGTAGGCCTTTGTTACTATGCTTTTTTAGTGGTAAACGTCTAGGATTATTGTTTTTGTAGCTTACTACCTCTTAGGCGTAAGCTACTATGCTGTCCTTCTAAGTGAGTGTAACAATAGAATCCGAGCCCTCAACGAACTCTGCCGATTTCGATCCGATGTTCTCCGATCTTTGAAACTTCCCCGGAGTCGGAGTTTTCTTCAGAGTATTTTACAGAATTGTTGCCTATTTGCATTTTCGGATTAgttaaatacggtattccaagtaataaaaggtgcagtaagctacatgcagttatagactgcctattCTTTCATTAACGTGATCAAGAAAGTGACATACTTGCAAACATTTTAGTTCATGAGTATTTTACGTTCTTACTCGACACAGTCCATAATCTTCTTTTCGTCTTGGCAACCGGGCTAGAGTGGTTTAGATTGCTACATTTTCCAGCCCGGTTGTCGAGATCTAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96KP1	Exocyst complex component 2 OS=Homo sapiens OX=9606 GN=EXOC2 PE=1 SV=1
Q9D4H1	Exocyst complex component 2 OS=Mus musculus OX=10090 GN=Exoc2 PE=1 SV=1
O54921	Exocyst complex component 2 OS=Rattus norvegicus OX=10116 GN=Exoc2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002784 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15469 all species →	Sec5	Exocyst complex component Sec5	Repeat	Interproscan
PF01833 all species →	TIG	IPT/TIG domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029175 all species →	Family	Exocyst complex component EXOC2/Sec5	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR039481 all species →	Domain	Exocyst complex component EXOC2/Sec5, N-terminal domain	Interproscan
IPR002909 all species →	Domain	IPT domain	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13043 all species →	EXOCYST COMPLEX COMPONENT SEC5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000145 all species →	Cellular Component	exocyst	Interproscan
GO:0006887 all species →	Biological Process	exocytosis	Interproscan
GO:0006893 all species →	Biological Process	Golgi to plasma membrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17637	EXOC2, SEC5; exocyst complex component 2	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.