Gene detail

Detailed information of amic_s0072.g52.t1 in Acropora microphthalma

Genomic Location: sc0000072_pilon:707874...732128
NR annotation: XP_029192748.2, protein MTSS 2-like isoform X2 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0072.g52.t1

CCATTCACAGAAAAACAAATTTGCGTAAATTTAGCGTAGATGACGAAGAGAGAATTGATCTTTGGCTAGAACCAGAATTTCGAATATTCGTCGACTGTCTTTGAAGGCCGGAAAATATTTTGGCATCCGTCGTAAGTATCGCCGTGGAGGCACATTGAATTCTTTGCGTGGTGAAGGAAGTTACATCTTGCCCTACCTCTGGAACTTTTTGTGAGCTCATGTTGAAAACCTGAAAGTGATTTGAAGAATCGAAGTTCAGTCAACGAGCGCCGCAATGGGCGACAGTGCGGACGAAGGGAACTTGATTCAGTTCATTTTAAACGACCTGAAGGCAACTACTCCTGTATGGGAGGACTTAGTCGGCAAAGCGAATAAATTGAACTCTGCTTTGAAGACAACAGTTGTAGCAGCAGACGGTTTTTTCGACACTTTTCAACGAATCGCCGATGTCGCGCTTTCTTCACGAGGATGCTGCAAAGACCTTGGAGGATCACTGACCAAAATGGTGATGAGGCACCGAAATGTGGATGGTAAACTTAAAGGACTTGCCAGTTTATTGTGTGAAGCTCTCATATTTCCACTCCAAGAAAAGTTGGATGACTGGAAAAAGACTGTAGTTCAGCTGGACAAGGACCATTCAAAAGAATATAAAAAGGCCAAACAAGAGCTAAAGAAAGCTACTGCCGAAACAAACAAGTGGCAAAAGAAGGTTAAAAAAGGTAAATCAGAACACCAGGAGAAGTTAGATGCAGCCTTGAAGCAAGCCAACGCCCAACAAGCTGCATTTGAAGATCAAGAGAAAAAATTTCTTCGAAAAGTGTTATTGGAAGAAAGATCAAGATATTGCGCGCTGGCAACATGCTTTAGGCCAGTTGTGGAGCATGAGATTTCAATGATGTCAGATATTGAACACCTGCAGTCGATCATGGCAGACATCATCAAACAGACTGCGAGTCCCACCAACCTGCCTCTTGCTGGAGAGGAGTTACTTCAAGAGTTTCGACTATCGGATCACCATGACGATCAGACTCCACCACCAAGTCCCACGACCACCCTGACCAGAGCGACAAGCCCACAGCATATTGGCCGGGACCCTCCAACCACGCCGCCACCCCCTCCCCCCTCAGAAACAGACGCTTACTTCAACGCATTCAGCCGGCATTACTCCTTCTCCGTGAAGCACAGTCAAACTCGCAGCAAGGTCGCTGGCTCAGTGACGCCTTCCACTTCTCCCAAGAAAGTGGTTCCGCCGCGAATCTGTGCGCGGTCGACGAGTTTTAGCGTCTCGTCAAACTCGTCACACTCCTCGAGGTCCTCGCTAGGTTCATCCACGGGGTCTCCTTCGATAGAGAGCTTTCCTCAGCCGCCTACACCACTCTTGTCTCCTGCGTATTCAGGAGATTTGCAAATGGACCCACTGCCTCCTCCACCCTTCCCTGGAGAGGTACCATCTCCTTCTCATCCAGGTAACAGGGGGTCTTGGACAACATCCACTGACTCAGGATGCTATTCTTCGTCATCTGGTGAAAGATCACCGTCAGCATCACTCGGTCAAGTGTATCCTTCTTCCATCCCTGAACACCCTTCCAGTGATGGACATGATGCACAAGGGCCGCAGTATGCCACGCCCTACGCCGTGAGCAATACGCGAACACGTTGCATGAGTGAATCGGCCTCGACCATGATACCTTACGGTATGGCACACAGAAGAAGCGATAGCGAAGCGTCCTCTCAGAGCAGTTACTCCGGCAACGATGCCCCTCCTCCAGGAAGGCTTAACGGCAGTGATTCCGGGTATTTTAGTCACGGGGGATATCATCATAGGTCGAATCCAGAGAGTATTCAAGAAAATTCAGCTGGTTACACTCTGCAGAAGAAGGCAAAGGCGGCGGCGTACTGCAGGAGTCAGAGTATATCAGGCCGCCCCTCTGCCTCCCAGCAAGCCCAGCTGGCGGCGTTAGCTAGCCACGCCGCGCGCAGCAGGAGCGCGCCAATGCCGCCCATGAGGAAGTCGTCGGTTACACCGCCCTGCCCTGGGCGAAAGACTGGGCTGTCCGACCCGGAGTTAAGTACGAAGGATGAACTTGATCAAGGGGCAGACGAGGAAGCCCAGGAAGAACCGTTGAGCTTTTTACAGAAACAGATTCAGCAGCAGAGACAGTTGATTAAGGCAAAGGCCAGAGAAAAGGAGCAGTCTTGATACGGGAACAAAGTAGCAGTATTTCTGGTGCATCTTCGGAACTGGACATTGTTGGAACGATGCACCAATGAGTAAGACAGCGGAATGTCACCGGATGTGTTCAGTATTTAAAATTTGATCGTCAGGCTGCAAACAGTAGGAACGTTTGAACATTTAATATTTGTTTCATAAAGTGAAGAAAGACTGTTAAGGAATTACTCAGGGACGCACCCTCCCTTCTCCGCCGACAAATTTACTTTCGTCACGCAATGTGGCGAGTCGAGAGAATATTACACaataggccatttccgaattaccgctagcctctttttcaaagcgagtcctggtgctcactctttcatatgaatattagtttttatttgcatgtgaatgaaaactaattttcatatgactcgctttgaaaaagaggccaaagggaattcggaaatggcctattGGTTCGCGTGACCAGCTGATAGATTGGCTTACAGTATTTAAATTTTATGCTGCGTAGTAAAGTAATTAATAGATGAGTGCTATTGTACAAATAATTGCTTCAACAGAAAAGTTTTGTATGGGAAGTTCTTGTGAGTTTTGCTTTTAAAAATGGAAATTTCAAACACAATAATATAATCGATAGTGTCATCTGCGAGACAATTTAATTTGTTTCTCTGGTTAAGGGAAGAACCTTAAGGAAAAAAATTCATTTTATATTTAAAAATTTTTGGTAGCTTTAAACCGCGAAGATTGTAGTAACAATTAACAGTTTGTATAATTTTATTGATTATTTGATTTCAGTGGATTAATTTAATAGAGTTATCGATTGGAAGAAGCTTTTGTCGTTGTGTAAATGACCGTTGCTATGTGAAAGATTCCGTGAACCGCAGCGTGGCTGGCCAGAAAACGGTGTTATGATTCATTTTAAGAAGGACTCTCACGATTACTTTGTTCAACACAGTCATTGCTGGTCAGTGAACTTAGACGAAAGTGCAGGCACTTTGCGTGTTAAAACCTTGTTTCGTGTCAGTCCTCTCTTCACCGAATGTCACTCTCAACGTCCATTTTATATTCTTTCAAATATGTAAATGTTAACAGACTAAGTTTCTTTCAATCCTTGACACTTCACTTTCCCACGATTTGGTGAGGTTTTATCCCATGCAGAACGTGTTAAGCTGTAAATAAGCAAAGTGTATACGCCACCGTTAATTTTGAAGCCTATACTCTAGCTTACCAGAAAACTATTCAACCTACACAGGCGTTTGATCGAAAGCAAGTCTCGTTTGTTTTATGCCAAGTGAGTTGATAGGTGCAAGACTAAGCAATTGTTTTTCTCTTTATTTTGGGAAAATATCAGTTGTGCTTTCTTTGTCACCTAATTTAACATTTTGCTCGAGTTTGCTAACATTTCTATCCAGCCTCCTTTTAAAGTGAGTTTATTAAGTGTTAATTTCTGTTTTAAGACATTTGTCGTTCTCATGAAAAAGATTGACCCCACACTTTCCTGATCTGTTGATATGGCGGAGAAGAATGGTCTCTTTAACATTCGAGACTTCTTTCTTCTGACATTCCTTGTGCTTCGTAATGTTTAGTTTAAGGGACGTCAGTTTTGTATCGATCTGAGCAGTTTTATCTCGCTGACGCAAAAACAGGAGTGTGGTGTTCATTCTTGATTGGTTTTCGCGCTCGTGATTTGCCCCCTTGTTTCAAACAAGACCTTAAGAAATCTTTTTTTTGTTCAGAATGTGGGTGACCTTAATTCAAAGTGCTATTTACTTAGCTGCACTTTTTGATATTGTATCGCCGTATCTCTAAGATAAAATAAAAGATGTCCTGTATAACCGAATAAAGATAGCGTTTTCAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O43312	Protein MTSS 1 OS=Homo sapiens OX=9606 GN=MTSS1 PE=1 SV=2
Q6P9S0	Protein MTSS 2 OS=Mus musculus OX=10090 GN=Mtss2 PE=1 SV=1
Q765P7	Protein MTSS 2 OS=Homo sapiens OX=9606 GN=MTSS2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004657 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08397 all species →	IMD	IRSp53/MIM homology domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013606 all species →	Domain	IMD/I-BAR domain	Interproscan
IPR030127 all species →	Family	I-BAR domain containing protein MTSS1/MTSS2	Interproscan
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15708 all species →	ACTIN BUNDLING/MISSING IN METASTASIS-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007009 all species →	Biological Process	plasma membrane organization	Interproscan
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0005543 all species →	Molecular Function	phospholipid binding	Interproscan
GO:0015629 all species →	Cellular Component	actin cytoskeleton	Interproscan
GO:0030031 all species →	Biological Process	cell projection assembly	Interproscan
GO:0031235 all species →	Cellular Component	obsolete intrinsic component of the cytoplasmic side of the plasma membrane	Interproscan
GO:0061024 all species →	Biological Process	membrane organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20128	MTSS1; metastasis suppressor protein 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.