Gene detail

Detailed information of amic_s0072.g68.t2 in Acropora microphthalma

Genomic Location: sc0000072_pilon:835264...850383
NR annotation: XP_044175135.1, LOW QUALITY PROTEIN: uncharacterized protein LOC114959088 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0072.g68.t2

ATGGTAGGTGTCTTCAGTAAATTGTTGCGAAATCACTCAACGCCCTTTTCGTTATTTTGTTATTCACCAGGAGAGTGCTTGAGCAACCCGGACAAATGCACCGCTGGACTGACTTTTGGTGTGAGATTTAAACTGGATGATGCAGCCAGTAACTACAAAGACGAGCCTCATTACATTGTGGATAGCGGAGGCTCCAGTAAGGAGTCACGTGGTTTCACTCTGTTCCTGAAGGACAGCAAATTGTATGCAGTTGTTTCGGTGCCCGACGAAGTTTGGAGGGTTGAATCGGACTTTGATTTCAATGCTTGGCAATACGTGATGGTGACCTGGGCACGAGAGAACGGCTTGGCGTTATACGTAAACGGTACTGAGATTGCGCGTGCGCGAGGCTACATGCCTCAAGAAGGGGACCATGATAAGGACTCTCACACAAGGCTCATCGTAGGACGCAGTGCTGCAGGCGCACCGTACGGTTACACCAAGATGGTCACCTCGTCGCTTGTGTTCTTTGATTCAGAGGTACCAGCCGAGAGTGCTAAAGATGTCTTCCTGTATTTCTCTAGCAACGTCGATTCCTCTTCGTCTACCCGTTTTGTTAAAGTGCGGTTTGATAATAAGGCTGGAATCCAAGTGAAAGTCATCCCCAGCAAGGGACAGAATAAGAACGAGGGATACACGGTGCAGCCGCACATGACGCTGGATTTGAATTTCGAAGAGAAAGGTCAGCAGAATGACATTCCCATTGAGTTCAAAGTGGACAATCCGTGGTCAACTGGTGACAAGCTGCTCATGAATGGACAAGCGGGTCGCGTCACTGTAGTACCCAGTCCTAACAAAGACGATATAAAGCTGGTCACAATCACAGCAAGTTTCCGTTGTCTTCAGCCTGAAGGTCTTTTCAAGGATCCTCTTGACAAGGCACGCTACATTCACTGCATCAAGGGCGAGCCACACTCCATGATCTGTCCAGACGAGATGGTTTGGGACGACTCTATGAAATCCTGCTTTGGACAAGGTCGAGAATCAACTCTCAACCAATCAGCTTACTACTTCTTCATCAAATTCACGAACAATGCTGGAAAAGATGCAGAGATTGCCATCCCTGGGACCAGGAAGTCCAACTCTATTCCCTCGGGCAAATCCCTCTCTCTGAAGTTCTCCAAGATGGCTGCGAAACCGGCTGATTTTGTGGCGCTCTCTAAACCTTTTAAAGAGCCGCTGCATCTGAATAATCAGCCCATTTTGAACGTCAAACCGGATGCAGATGCCGATAAGATCGTGCCTGTCACCATCACTAATCCTCCGTATTACTACACGATCACAACCAAAACGGGAGCTCAGTACCACGCGGGTACGGATGGGAAGGTGTTTGTTCGTCTCGTTGGGGATAAAGGATCTACGGACAAGATGCTTCTGTCCTCCAATATTCCTTCCGGGACGCGGCATTTTAAGACCGGACAATTGGACTCGTTCCGAGTGGCAGCTTCGGATGTTGGATTAATAACAAACCTTTTCTTAGAGATGTATAATTCTGGGCAAGCATCAAGAAAATGGTTCTTGGATACGATTTCAGTCAAAGACATGAAAGGAAGGAGGTTTGAGTTTCCTGTCCGTGACTGGATTGACAATAAAGGACTTGTTGCACAAAGAAACCTCGCCCTGTCATCCAATGGGTTCCAAGACCAGCCACCGAAGCCGTCTCTTAAATCCCACGACTGCGATAAGAATTGTCAGCATGGTGGGCGCTGTGTGCAGGGACAGTGCATTTGTCCTTTAAATTATGAAGGAGAACACTGTGAAAAAGCCGTATGCTCAACATCTTGTTTTAATGGTGGAAGTTGTACTGATCCCAGTCTCAATAATTGTTCTTGCCCACGAGGTTTCACTGGTAATTTATGTCAAACACCTGTGTGTAATAACTATTGTTTGCACGGTGGTGAGTGCACAAAACCCGAGAGCTGTACATGCGCGCCGGGATACAGCGGCAAAAGATGTGAGAAATCTGCGTGCAAACCAGATTGTATGAATGGAGGCATGTGTAACAATGGCACCTGTGAATGTCTCCCTGGTTATTCAGGACAATCCTGTAGAATTGGAAATCTGTGTGCTCTTCCCGCAGACAATGGTCCATGTTTGTCGGAAATTCAAGATGCCCTTTCTCCTTCCAAGAAAACAGGCTTAACGCAAGCTTGTGCAAATTATTTGTCAGACCTACAGAATAGTTGTTCAATCCAAACGACTTCATCCAGCTTTGAGGAATGTGGGAAAATTTGTGGAAATGTTGATTCAATTTGCACAAACGTTTGGAGGAACACCAAGTGTGGCACCGAAGTCCTGAAATATTTCTTTAACTCTGCTACAAATACGTGCCAACCGTTCAAATACTACAGCTGCCTTGGAAATGAGAACAAGTTTGATTCTTTAGAGCAATGCAACGAAATGTGTGGACAGAACACAAAACAGAAGCGGGAAATTTCCAACAGGACGCGCATGGTATCAAAGACGAAAGCCAACCACTTCGAAACAATAGTGCAGAGGTTGAATGACGTCGTTAGACAGCCTTCAAGATGA

Transcript

amic_s0072.g68.t2

actcatctggccatttACTATGGTAGGTGTCTTCAGTAAATTGTTGCGAAATCACTCAACGCCCTTTTCGTTATTTTGTTATTCACCAGGAGAGTGCTTGAGCAACCCGGACAAATGCACCGCTGGACTGACTTTTGGTGTGAGATTTAAACTGGATGATGCAGCCAGTAACTACAAAGACGAGCCTCATTACATTGTGGATAGCGGAGGCTCCAGTAAGGAGTCACGTGGTTTCACTCTGTTCCTGAAGGACAGCAAATTGTATGCAGTTGTTTCGGTGCCCGACGAAGTTTGGAGGGTTGAATCGGACTTTGATTTCAATGCTTGGCAATACGTGATGGTGACCTGGGCACGAGAGAACGGCTTGGCGTTATACGTAAACGGTACTGAGATTGCGCGTGCGCGAGGCTACATGCCTCAAGAAGGGGACCATGATAAGGACTCTCACACAAGGCTCATCGTAGGACGCAGTGCTGCAGGCGCACCGTACGGTTACACCAAGATGGTCACCTCGTCGCTTGTGTTCTTTGATTCAGAGGTACCAGCCGAGAGTGCTAAAGATGTCTTCCTGTATTTCTCTAGCAACGTCGATTCCTCTTCGTCTACCCGTTTTGTTAAAGTGCGGTTTGATAATAAGGCTGGAATCCAAGTGAAAGTCATCCCCAGCAAGGGACAGAATAAGAACGAGGGATACACGGTGCAGCCGCACATGACGCTGGATTTGAATTTCGAAGAGAAAGGTCAGCAGAATGACATTCCCATTGAGTTCAAAGTGGACAATCCGTGGTCAACTGGTGACAAGCTGCTCATGAATGGACAAGCGGGTCGCGTCACTGTAGTACCCAGTCCTAACAAAGACGATATAAAGCTGGTCACAATCACAGCAAGTTTCCGTTGTCTTCAGCCTGAAGGTCTTTTCAAGGATCCTCTTGACAAGGCACGCTACATTCACTGCATCAAGGGCGAGCCACACTCCATGATCTGTCCAGACGAGATGGTTTGGGACGACTCTATGAAATCCTGCTTTGGACAAGGTCGAGAATCAACTCTCAACCAATCAGCTTACTACTTCTTCATCAAATTCACGAACAATGCTGGAAAAGATGCAGAGATTGCCATCCCTGGGACCAGGAAGTCCAACTCTATTCCCTCGGGCAAATCCCTCTCTCTGAAGTTCTCCAAGATGGCTGCGAAACCGGCTGATTTTGTGGCGCTCTCTAAACCTTTTAAAGAGCCGCTGCATCTGAATAATCAGCCCATTTTGAACGTCAAACCGGATGCAGATGCCGATAAGATCGTGCCTGTCACCATCACTAATCCTCCGTATTACTACACGATCACAACCAAAACGGGAGCTCAGTACCACGCGGGTACGGATGGGAAGGTGTTTGTTCGTCTCGTTGGGGATAAAGGATCTACGGACAAGATGCTTCTGTCCTCCAATATTCCTTCCGGGACGCGGCATTTTAAGACCGGACAATTGGACTCGTTCCGAGTGGCAGCTTCGGATGTTGGATTAATAACAAACCTTTTCTTAGAGATGTATAATTCTGGGCAAGCATCAAGAAAATGGTTCTTGGATACGATTTCAGTCAAAGACATGAAAGGAAGGAGGTTTGAGTTTCCTGTCCGTGACTGGATTGACAATAAAGGACTTGTTGCACAAAGAAACCTCGCCCTGTCATCCAATGGGTTCCAAGACCAGCCACCGAAGCCGTCTCTTAAATCCCACGACTGCGATAAGAATTGTCAGCATGGTGGGCGCTGTGTGCAGGGACAGTGCATTTGTCCTTTAAATTATGAAGGAGAACACTGTGAAAAAGCCGTATGCTCAACATCTTGTTTTAATGGTGGAAGTTGTACTGATCCCAGTCTCAATAATTGTTCTTGCCCACGAGGTTTCACTGGTAATTTATGTCAAACACCTGTGTGTAATAACTATTGTTTGCACGGTGGTGAGTGCACAAAACCCGAGAGCTGTACATGCGCGCCGGGATACAGCGGCAAAAGATGTGAGAAATCTGCGTGCAAACCAGATTGTATGAATGGAGGCATGTGTAACAATGGCACCTGTGAATGTCTCCCTGGTTATTCAGGACAATCCTGTAGAATTGGAAATCTGTGTGCTCTTCCCGCAGACAATGGTCCATGTTTGTCGGAAATTCAAGATGCCCTTTCTCCTTCCAAGAAAACAGGCTTAACGCAAGCTTGTGCAAATTATTTGTCAGACCTACAGAATAGTTGTTCAATCCAAACGACTTCATCCAGCTTTGAGGAATGTGGGAAAATTTGTGGAAATGTTGATTCAATTTGCACAAACGTTTGGAGGAACACCAAGTGTGGCACCGAAGTCCTGAAATATTTCTTTAACTCTGCTACAAATACGTGCCAACCGTTCAAATACTACAGCTGCCTTGGAAATGAGAACAAGTTTGATTCTTTAGAGCAATGCAACGAAATGTGTGGACAGAACACAAAACAGAAGCGGGAAATTTCCAACAGGACGCGCATGGTATCAAAGACGAAAGCCAACCACTTCGAAACAATAGTGCAGAGGTTGAATGACGTCGTTAGACAGCCTTCAAGATGAAAGGATCTCGTATTTCACTTGTAAATTTGAGAAAAATATGGTGTTAGTGCTGAAATCACGGAAGTTTGGATGACATCCAATTTCACCATCTTTCGGCTTTCGAACCTCCTCGATGCCTTAATCCATTGTTTATAGACAATCAGACGCACTAATGGTTCTTGGCCATTATTTGATTATGATCGAAAGGTTTCGAAAACCATTTTTTTTTTTCAGCTCAAAGTCTATTAAGCACATTTAGTTGTTGGTGGGCAGTCAGAACTATAGCCGTATCAATCGAAAACAAGATTTCACCATCTTTATATTCTTCCGTCGAATTAAACAGGATATGAATGAAATCAATTCTGTTCTCATTTTAAGGTGACAGAGAGGGAGACAAAAAATCAAATTTTTAAAATAATATTTATTTCAGAGTGTTTATTGAATGGTTTAGTTTTGTATATTTAACTTATTCTCTAATTATGATCACGGAGGCTGCAAAATAGCATAGCTTAGCTATGCACAAATTGACTGACAGTGGTATCTTTTCGAGTCACGCGTCTCGATCGCTATGCCGACCATTTCACGTTCTTAGCCGAGTACAATACTGAGACATTTGCGATATTTGACTGTTTGATTGTTGATCATCTCTATCTGCGACACCCTCTTTGGAGATATTACCTGGAAAAGCACTGTCAAGTCTTTGCTAGCCATGATATTGCTAGAGGAAGTGATGCGAGTTTCAAGTTTTCCGCTTTTTTTTTCAGTAATTGGCTTTATGGCTAATTTTGAGAGACAAATAAAATAGACAAAAAATT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q29143	Early lactation protein OS=Trichosurus vulpecula OX=9337 GN=ELP PE=1 SV=1
P00976	Colostrum trypsin inhibitor OS=Bos taurus OX=9913 PE=1 SV=2
C1IBY4	Tabkunin 1 OS=Tabanus yao OX=485572 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000019 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12661 all species →	hEGF	Human growth factor-like EGF	Domain	Interproscan
PF01477 all species →	PLAT	PLAT/LH2 domain	Domain	Interproscan
PF00014 all species →	Kunitz_BPTI	Kunitz/Bovine pancreatic trypsin inhibitor domain	Domain	Interproscan
PF13385 all species →	Laminin_G_3	Concanavalin A-like lectin/glucanases superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002223 all species →	Domain	Pancreatic trypsin inhibitor Kunitz domain	Interproscan
IPR036508 all species →	Homologous_superfamily	Chitin binding domain superfamily	Interproscan
IPR002557 all species →	Domain	Chitin binding domain	Interproscan
IPR001024 all species →	Domain	PLAT/LH2 domain	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR013032 all species →	Conserved_site	EGF-like, conserved site	Interproscan
IPR036880 all species →	Homologous_superfamily	Pancreatic trypsin inhibitor Kunitz domain superfamily	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR051830 all species →	Family	Neurogenic locus notch homolog	Interproscan
IPR036392 all species →	Homologous_superfamily	PLAT/LH2 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24033 all species →	EGF-LIKE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004867 all species →	Molecular Function	serine-type endopeptidase inhibitor activity	Interproscan
GO:0008061 all species →	Molecular Function	chitin binding	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0072.g68.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.