Detailed information of amic_s0072.g70.t1 in Acropora microphthalma

Genomic Location: sc0000072_pilon:891065...905023
NR annotation: XP_044175135.1, LOW QUALITY PROTEIN: uncharacterized protein LOC114959088 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q96RW7Hemicentin-1 OS=Homo sapiens OX=9606 GN=HMCN1 PE=1 SV=2
B3EWZ3Coadhesin (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
B3EWY9Mucin-like protein (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000019 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00090
all species →		TSP_1Thrombospondin type 1 domainDomainInterproscan
PF01822
all species →		WSCWSC domainDomainInterproscan
PF00086
all species →		Thyroglobulin_1Thyroglobulin type-1 repeatDomainInterproscan
PF13385
all species →		Laminin_G_3Concanavalin A-like lectin/glucanases superfamilyDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000716
all species →		DomainThyroglobulin type-1Interproscan
IPR036383
all species →		Homologous_superfamilyThrombospondin type-1 (TSP1) repeat superfamilyInterproscan
IPR036857
all species →		Homologous_superfamilyThyroglobulin type-1 superfamilyInterproscan
IPR000884
all species →		RepeatThrombospondin type-1 (TSP1) repeatInterproscan
IPR006558
all species →		DomainLamG-like jellyroll foldInterproscan
IPR002889
all species →		DomainCarbohydrate-binding WSCInterproscan
IPR013320
all species →		Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR052065
all species →		FamilyComplement and asymmetry regulatorInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22906
all species →		PROPERDINInterproscan

 Gene Ontology
No Gene Ontology signature was detected for amic_s0072.g70.t1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0072.g70.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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