Detailed information of amic_s0072.g89.t1 in Acropora microphthalma

Genomic Location: sc0000072_pilon:1088637...1098120
NR annotation: XP_015771566.1, PREDICTED: uncharacterized protein LOC107349888 [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q3UIR3E3 ubiquitin-protein ligase DTX3L OS=Mus musculus OX=10090 GN=Dtx3l PE=1 SV=1
Q8TDB6E3 ubiquitin-protein ligase DTX3L OS=Homo sapiens OX=9606 GN=DTX3L PE=1 SV=1
Q8N9I9Probable E3 ubiquitin-protein ligase DTX3 OS=Homo sapiens OX=9606 GN=DTX3 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000869 (this species only)
Ubiquitin familyE3|E3 activity RING|RING · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13923
all species →
zf-C3HC4_2Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF01661
all species →
MacroMacro domainDomainInterproscan
PF18102
all species →
DTCDeltex C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002589
all species →
DomainMacro domainInterproscan
IPR039396
all species →
DomainDeltex, C-terminalInterproscan
IPR039399
all species →
Homologous_superfamilyDeltex, C-terminal domain superfamilyInterproscan
IPR043472
all species →
Homologous_superfamilyMacro domain-likeInterproscan
IPR001841
all species →
DomainZinc finger, RING-typeInterproscan
IPR017907
all species →
Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR012677
all species →
Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR039398
all species →
FamilyDeltex familyInterproscan
IPR013083
all species →
Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12622
all species →
DELTEX-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005654
all species →
Cellular ComponentnucleoplasmInterproscan
GO:0007219
all species →
Biological ProcessNotch signaling pathwayInterproscan
GO:0016567
all species →
Biological Processprotein ubiquitinationInterproscan
GO:0061630
all species →
Molecular Functionubiquitin protein ligase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K06058DTX; deltexEC:2.3.2.27
Ubiquitin systemko04121deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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