Gene detail

Detailed information of amic_s0072.g99.t1 in Acropora microphthalma

Genomic Location: sc0000072_pilon:1227811...1230533
NR annotation: XP_015749070.1, PREDICTED: glycogen-binding subunit 76A-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0072.g99.t1

CAGATATACTTGGAACAGCACACACCAAGTTTGCGTCCGCGGGAAATATCTGCAGCAACTCACTGAGGAAACTTGTCCACTGACCAAAACAACAACAGAGGAAAGATGAAACTATTGTGATATTTTGGGCACCATTGTAACGCGAGTCACAGACACTGACGCACTGGATCACGAATGAGCGTTGAACTTTGGCCATCATATGAAAAACAAACAGGGATGAAGACGGATGCTCAACAGGCAAGCTCCATGCAAGATAGTGCAACGCCGGGCTCCAAAAGAGTTTGCTTTGCAGATCTCGTTGGCCTCAAACTCGAGTTTGTCAAGACAATAACCCCATGTAGCAGCGAGGACAATTTGACCGCATTGGCCGGTGTTGTCAGCGCGTGGAAACGTACGCACTACGATATCAACGGCAATGTCTCCCTTGGACCGCGGACGAAACGTCTCATGCCGTGCTTTAGTCCCCCGTCGAAATCGGACGGTTTTATGAAGCGCGTCTTTGACCAAAATGTCTGTCTAGAGAACATTGCTTGCGAGAACTTTGTTGTTACAGGAATTATTCGAGTAACGAATTTATCATACACAAAGGAAGTCACTGTTCGTTGTACACTAGACGATTGGGACACTTACCGAGACATTTGGGCTGATTTTATGTCTTCTTGCTCTAACGGCAAAACCGACAAGTTTAGCTTCCGTATCTCTGTACCTTCTGACTTTGAATTGCATCGATACATGCACTTTGCAATCCGCTATAAAGTCTTGAATCAAGAGTTCTGGGACAACAATAACACAAAAAATTATCATGTACAGTGCCTATAGGTGTAAAACCGTCTCTGCTCGAATAGTTTTGGACAAGCTTGCGGGAGAGGAATCGATAATAAAAAGGCAATGGTTGTTTTGCTAAGAAAGATATGTTGGTGTACTGAATCCATTTTGTCACCGTGACTGGAAAAAACTCTGAGTAAATCAGCGTTTTCTGGACGTTTTTATAATTACCTACAGAAACGTGTAAAAACCTTCTTAGGATCTTCAGCTCCAATATCAAGCGGCGAGTGCCATGAACTAGAAAGGCACGAACGTGATCATTACGAAAAAAAATGGTAAATAAACTTTTATTTTTCTTCATAGTATTCCGGTGAATGGCAAACGTGTTTTCGGAACGATATCACAGTGAATATTTACGGAGGTAAATATAACTTAATATGAAGAGAAGTCGACAACAAACAACTCAGTTTTTGCCTCCAAGCAAAGCAAACTCCAAATCTTCAGTGAAACACTGGTTTCTTGTCCTTCGTAGAGTTGAAATTGCCTGCTCTCAGAAAAACCGAAGGAAGACCTTTCTGGATTAAGGACAAAATGTTAAAAAAAAAACCGCATTATTTTGTTGGAAAATGCAAATGATGCATCTTAAAATGTTTCCTAGTTGATTTCGAGCAATGTGTAAGAAGAAATTGTGGTTGAAAATGAAGTTTCGTTTAATCTGACGACGTAATGAATTTCCCAGTGGCAAATAATTTTTAATAATGCATCATCTTAATGCTTAAATGAAACTGATTATACAATCAACGGAACACTATGAAAGCTGTCATATACCGTCAATACAAATTACAAATAACGAACACAACAAAGGATGGAAAAATCCCTGAACATTCAGAACCGTGTATCCGGCATAAGGACTCACAAAGACAGTTCCTTCGTTTTTGCGGTTAAAAAATATCGCCACATCCTGTCTTCACTGAGCATGAATTTGCAACCAAAGTAACCGTACGATGTTGGCCTGACGAGATTTACAGCTAAGAATGCACAACAACAACACACAAGAGCAATTAATAGCCTTTTGTTGGTTTCCCCAATTGTTATGTTTTGAAAACACGCTGTTAATATTACCATCAACTTTCAAAACCGGGTTAAAAGATTCTAGAGAGATCATAGCACTGACTTTATTCCATAAAACTGGGCATTCACCATTTCTCAAAACTGAAAATGATCTCTGAACGAATGTCAGAGTGGGGTGAACCTGACAGCTGAAAAATTAAGACTCAAACATGACTGTCAGCTGGTCGTGATAAATTCATGTAGAGATAGGCCTTGAGAATTTCTGTCAAAAAGAGCCAGCCTAGTTTGTTTTTTTTTTTAAAAAAACTTCAGCAAGAACGAATCAAGAATATCATCACCAAGATTCTGAAGAAACGAAAAACTGAATA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6GL23	Protein phosphatase 1 regulatory subunit 3C OS=Xenopus tropicalis OX=8364 GN=ppp1r3c PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000769 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03370 all species →	CBM_21	Carbohydrate/starch-binding module (family 21)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050782 all species →	Family	Protein phosphatase 1 regulatory subunit 3	Interproscan
IPR005036 all species →	Domain	CBM21 (carbohydrate binding type-21) domain	Interproscan
IPR038175 all species →	Homologous_superfamily	CBM21 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12307 all species →	PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000164 all species →	Cellular Component	protein phosphatase type 1 complex	Interproscan
GO:0005979 all species →	Biological Process	regulation of glycogen biosynthetic process	Interproscan
GO:0008157 all species →	Molecular Function	protein phosphatase 1 binding	Interproscan
GO:2001069 all species →	Molecular Function	glycogen binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0072.g99.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.