Detailed information of amic_s0074.g21.t2 in Acropora microphthalma

Genomic Location: sc0000074_pilon:254706...275170
NR annotation: XP_044174530.1, transforming growth factor-beta receptor-associated protein 1-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q3UR70Transforming growth factor-beta receptor-associated protein 1 OS=Mus musculus OX=10090 GN=Tgfbrap1 PE=1 SV=1
A7MB11Transforming growth factor-beta receptor-associated protein 1 OS=Bos taurus OX=9913 GN=TGFBRAP1 PE=2 SV=1
Q8WUH2Transforming growth factor-beta receptor-associated protein 1 OS=Homo sapiens OX=9606 GN=TGFBRAP1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004107 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10367
all species →		Vps39_2Vacuolar sorting protein 39 domain 2DomainInterproscan
PF00780
all species →		CNHCNH domainRepeatInterproscan
PF10366
all species →		Vps39_1Vacuolar sorting protein 39 domain 1RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001180
all species →		DomainCitron homology (CNH) domainInterproscan
IPR000547
all species →		RepeatClathrin, heavy chain/VPS, 7-fold repeatInterproscan
IPR019453
all species →		DomainVacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2Interproscan
IPR019452
all species →		DomainVacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1Interproscan
IPR032914
all species →		FamilyVam6/VPS39/TRAP1 familyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12894
all species →		CNH DOMAIN CONTAININGInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006886
all species →		Biological Processintracellular protein transportInterproscan
GO:0016192
all species →		Biological Processvesicle-mediated transportInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0006914
all species →		Biological ProcessautophagyInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0034058
all species →		Biological Processendosomal vesicle fusionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K20177VPS3, TGFBRAP1; vacuolar protein sorting-associated protein 3-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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