Gene detail

Detailed information of amic_s0074.g28.t1 in Acropora microphthalma

Genomic Location: sc0000074_pilon:386896...400438
NR annotation: XP_015754068.1, PREDICTED: glutamate receptor ionotropic, kainate 2-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0074.g28.t1

ATGAAATTTGGCTCGTCGACAATCACCATCTTTATTATTCTGTCAAGGAATGTTCTCATTGGAAGTGAATTAACCTTGAAAATTGGAGCTATGTTTGAAGACAAAAGACTGATAAGGCCGTTTCTCACCGCCATTGACATTGTTAACAGGGACCCCAATGTTCTCCCAGGCGTTCAGCTTGAAACCATTATTAATATAACCAAATCACACGATGCTTTTGATAGCTTAAAAGCAGCTCATTATCTCATTCACAAAGGCATTGTTGCCGTGGTTGGTCCAGCTATGTCATTTCATGTAAAGTACACGCAGCCGTACTTTGCAGGAATTAATGGCATGGTTGCTTTGAAAGATGAAGCGTACAAACGAGGCTGGTCGGTCGTGGCACATGAACACTTTGAACCCGTCCCAGACCCCTATCAAATTAACATAACCAGACAACTAAAATGGATTAGGCAAACAGGCACAAGGATTGTGATACTTAACTGCTACAAGAAATATTCGAAACAGATCCTCAAAGAAGCTGGTGATCTTGGTATGATGAAGAACTGGGTTTGGATTGTCACCGATGCACAAACTGAGCAGGATTGGCAGATACTTGGAGACGACTTTGTTGTTAATCAGTTTTATGGAATCATTGGTACACGTCTTGCTTATGGTGATGGATCCCGTTATCAGGAAACTTTGAAAAACTGGAGGAGTGACGAACATGGCGAGCTTGACGTGGTTGCTGGGAAGTTTTATGATGCAGTCTTGGCAATATCATGGTCCCTTCATCTCATGATATTGGATGGATATGACATAACAGGTCAGAGCCTTGGTTTTGATTTTGATAGTGGCCCAATTAAACCATGGAGATACGGAAAGGAACTTATGAAGTACATACGGAAGATCAACACAAGTGGTACAATGAATGACTTGAATTTCCAGCAAGATGGCTCTCCTACATATCAAGAGTATGATATCGTTAACTTAGGGAGAACAGGATTTGTTCAAGAGCCGCCATTTGTTGAAAAAGAAGTTACTTCGAGTGGAAAAATCGTTTATAAAGGTTTCTGTATCGAGTTACTGAACAGATTACAGCAAGACATGAAGTTCAAGTACACTCTTGAGGCTGTGCCAAAAAACCGATATGGATCATGGGATTTATTCGATGAAAAATGGAGCGGAATCATAGGATATTTAGTGGAAAAAAAAGCAGATCTTGCCATCGGACCGCTGACCGTTAGTTCGCAACGTCAGTCAGCTGTAGATTTCACCCAACCCTTTGTGCATCTTGGGCTTTCCATTCTCGTAAAAAACAGCGTCAACGTTGATTACAAAGTGTTCTCATTCCTAAAACCATTCAACGCTTATCTATGGATAGCAATCGTTGTTGCTACGATTCTTGTTGGAGTGTTTCTCTGGTTACACGCCACTTTCAGTCCACGCGGCTACCACGGAAGAATCGCCCAATCACGGGATCCGAGACAGGTCAGGGAAGATCATTGGACCACGCGAGATTGTCTGCGCTTGTTTGATTCTATGTGGTCTTCGTTTTCGTACGGTGTTGGTCAAGGTGCTGATATAGCACACCCTAAATCCATCTCCGGGAGAGTTGTTGTTGGGTTCTGGTGGTTTGCTATGCTGATCATAAGTGCTTCCTACACAGCCAACTTGGCTAGCTTCTTAATTAGAGATGTTTTTGAGACTCCAATCAGTAGTCTTGACGATTTGGCTGCACAGACCTCTATTAAATACGGCTGCGTCAAAGATAGTCACACAATGACATTTTTCCAAATGTCACGCGTTGCCACTCACGCAAAGATGTGGGCTTTCATGCAGCGTCACAATACATTTGTGGAAAATGTGACTGAAGGAGTCAAGAGAGCCAGAGACGGTGGCTACGCTTTTATTAGCGATTCACAAGTTTTAGAATACTATGCTAAACAGAAACCTTGCAACGAATTAACCACTATTGGAAGGGTCTTTGGCAAATTTGGTTATGGATTTGGACTTTCAAAACGTTCACCCTACACCCATCAATTCAGCGTCGAAATTTTAGAGCTGCGACAGAAAGGATTTGTGAATTTACTAACACAAAGATGGCTTCAAGGAGTCTGTGCTACGCGTGAAAAGGAAGCAGGTGAACTAGCTTGGGCAACGAGAAAAGACAAGAAACAAAAAAAGGCCTCACGCCTTTTACAAGGAATAAAGGACCGGTTGGTGTTATCTTGGAAAAGAAAACGAGAAACTACTCACAGAAGCTATGATGATGAGCCTGTTACATATTGGAGTATTGCCATCGAACGATTACAAAATCTCATTCCTACTAACAGAAATGATAAACGGGTAATTGATAAACGCAGGAGAAGAACAAATTTCATGACTGATGAACAACACGAGGCAACCAACGAAAAACTTGTCGGTGTGAGAGAACCAGTCGATGAGCACTCAAGCAAGCCTACTTCGTACATTTAG

Transcript

amic_s0074.g28.t1

TTTTCTTTGACTGGTAAAGAAATGAAATTTGGCTCGTCGACAATCACCATCTTTATTATTCTGTCAAGGAATGTTCTCATTGGAAGTGAATTAACCTTGAAAATTGGAGCTATGTTTGAAGACAAAAGACTGATAAGGCCGTTTCTCACCGCCATTGACATTGTTAACAGGGACCCCAATGTTCTCCCAGGCGTTCAGCTTGAAACCATTATTAATATAACCAAATCACACGATGCTTTTGATAGCTTAAAAGCAGCTCATTATCTCATTCACAAAGGCATTGTTGCCGTGGTTGGTCCAGCTATGTCATTTCATGTAAAGTACACGCAGCCGTACTTTGCAGGAATTAATGGCATGGTTGCTTTGAAAGATGAAGCGTACAAACGAGGCTGGTCGGTCGTGGCACATGAACACTTTGAACCCGTCCCAGACCCCTATCAAATTAACATAACCAGACAACTAAAATGGATTAGGCAAACAGGCACAAGGATTGTGATACTTAACTGCTACAAGAAATATTCGAAACAGATCCTCAAAGAAGCTGGTGATCTTGGTATGATGAAGAACTGGGTTTGGATTGTCACCGATGCACAAACTGAGCAGGATTGGCAGATACTTGGAGACGACTTTGTTGTTAATCAGTTTTATGGAATCATTGGTACACGTCTTGCTTATGGTGATGGATCCCGTTATCAGGAAACTTTGAAAAACTGGAGGAGTGACGAACATGGCGAGCTTGACGTGGTTGCTGGGAAGTTTTATGATGCAGTCTTGGCAATATCATGGTCCCTTCATCTCATGATATTGGATGGATATGACATAACAGGTCAGAGCCTTGGTTTTGATTTTGATAGTGGCCCAATTAAACCATGGAGATACGGAAAGGAACTTATGAAGTACATACGGAAGATCAACACAAGTGGTACAATGAATGACTTGAATTTCCAGCAAGATGGCTCTCCTACATATCAAGAGTATGATATCGTTAACTTAGGGAGAACAGGATTTGTTCAAGAGCCGCCATTTGTTGAAAAAGAAGTTACTTCGAGTGGAAAAATCGTTTATAAAGGTTTCTGTATCGAGTTACTGAACAGATTACAGCAAGACATGAAGTTCAAGTACACTCTTGAGGCTGTGCCAAAAAACCGATATGGATCATGGGATTTATTCGATGAAAAATGGAGCGGAATCATAGGATATTTAGTGGAAAAAAAAGCAGATCTTGCCATCGGACCGCTGACCGTTAGTTCGCAACGTCAGTCAGCTGTAGATTTCACCCAACCCTTTGTGCATCTTGGGCTTTCCATTCTCGTAAAAAACAGCGTCAACGTTGATTACAAAGTGTTCTCATTCCTAAAACCATTCAACGCTTATCTATGGATAGCAATCGTTGTTGCTACGATTCTTGTTGGAGTGTTTCTCTGGTTACACGCCACTTTCAGTCCACGCGGCTACCACGGAAGAATCGCCCAATCACGGGATCCGAGACAGGTCAGGGAAGATCATTGGACCACGCGAGATTGTCTGCGCTTGTTTGATTCTATGTGGTCTTCGTTTTCGTACGGTGTTGGTCAAGGTGCTGATATAGCACACCCTAAATCCATCTCCGGGAGAGTTGTTGTTGGGTTCTGGTGGTTTGCTATGCTGATCATAAGTGCTTCCTACACAGCCAACTTGGCTAGCTTCTTAATTAGAGATGTTTTTGAGACTCCAATCAGTAGTCTTGACGATTTGGCTGCACAGACCTCTATTAAATACGGCTGCGTCAAAGATAGTCACACAATGACATTTTTCCAAATGTCACGCGTTGCCACTCACGCAAAGATGTGGGCTTTCATGCAGCGTCACAATACATTTGTGGAAAATGTGACTGAAGGAGTCAAGAGAGCCAGAGACGGTGGCTACGCTTTTATTAGCGATTCACAAGTTTTAGAATACTATGCTAAACAGAAACCTTGCAACGAATTAACCACTATTGGAAGGGTCTTTGGCAAATTTGGTTATGGATTTGGACTTTCAAAACGTTCACCCTACACCCATCAATTCAGCGTCGAAATTTTAGAGCTGCGACAGAAAGGATTTGTGAATTTACTAACACAAAGATGGCTTCAAGGAGTCTGTGCTACGCGTGAAAAGGAAGCAGGTGAACTAGCTTGGGCAACGAGAAAAGACAAGAAACAAAAAAAGGCCTCACGCCTTTTACAAGGAATAAAGGACCGGTTGGTGTTATCTTGGAAAAGAAAACGAGAAACTACTCACAGAAGCTATGATGATGAGCCTGTTACATATTGGAGTATTGCCATCGAACGATTACAAAATCTCATTCCTACTAACAGAAATGATAAACGGGTAATTGATAAACGCAGGAGAAGAACAAATTTCATGACTGATGAACAACACGAGGCAACCAACGAAAAACTTGTCGGTGTGAGAGAACCAGTCGATGAGCACTCAAGCAAGCCTACTTCGTACATTTAGCAATTTACTTTCTTCCTACGCAAGCATAACTCAAATTCAGCAACAAATTCAGGTTCAATTTCCTCAACTTTAATTAGTTGTCTCTTTAATTTACAATGGCGCATGTTATATATTAAAATAAAATAACAACACGCGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A2R8QF68	Glutamate receptor ionotropic, kainate 2 OS=Danio rerio OX=7955 GN=grik2 PE=3 SV=1
P42264	Glutamate receptor ionotropic, kainate 3 OS=Rattus norvegicus OX=10116 GN=Grik3 PE=1 SV=1
Q91755	Glutamate receptor ionotropic, kainate 2 OS=Xenopus laevis OX=8355 GN=grik2 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001435 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00060 all species →	Lig_chan	Ligand-gated ion channel	Family	Interproscan
PF10613 all species →	Lig_chan-Glu_bd	Ligated ion channel L-glutamate- and glycine-binding site	Domain	Interproscan
PF01094 all species →	ANF_receptor	Receptor family ligand binding region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028082 all species →	Homologous_superfamily	Periplasmic binding protein-like I	Interproscan
IPR015683 all species →	Family	Ionotropic glutamate receptor	Interproscan
IPR019594 all species →	Domain	Ionotropic glutamate receptor, L-glutamate and glycine-binding domain	Interproscan
IPR001320 all species →	Domain	Ionotropic glutamate receptor, C-terminal	Interproscan
IPR001828 all species →	Domain	Receptor, ligand binding region	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18966 all species →	IONOTROPIC GLUTAMATE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0008066 all species →	Molecular Function	glutamate receptor activity	Interproscan
GO:0015276 all species →	Molecular Function	ligand-gated monoatomic ion channel activity	Interproscan
GO:0035249 all species →	Biological Process	synaptic transmission, glutamatergic	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan
GO:0050804 all species →	Biological Process	modulation of chemical synaptic transmission	Interproscan
GO:0098839 all species →	Cellular Component	postsynaptic density membrane	Interproscan
GO:1904315 all species →	Molecular Function	transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0074.g28.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.