Gene detail

Detailed information of amic_s0074.g45.t1 in Acropora microphthalma

Genomic Location: sc0000074_pilon:637230...644168
NR annotation: XP_029189127.2, solute carrier family 15 member 4-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0074.g45.t1

TTTCACGCGATCAACAAAACAACAGTTGTTTGACCGGCGATCAAGCTCTGATCTTCGAAAAAAGGAAAGGAGTGCTTTCTTGGTGCTGTGTCAGGCTGCAGGCTGCAGGCTGCAGGCTACAAAGGAAAATAAAATAAGTTTGATTTTCTATTGCTATGGCAACCCAAAGAAATGAAAATGACAGTGCACCTTTAAACACTGATAACTGCAATCAAAATGAGATAAATGAGAGAACTGCTGTGTTGAGGCCAACAAGGAACTCTACAGCCCGCAGACGGAGGATCTTTGTCACACTCTGTATTCTTGTCACAGAGTTATGTGAGCGACTAACTTTCTATGGAGTTACAGCCAACCTTGTTTTATTTTGTATGGAGGATTTAAAGCTAGACTCACCATGGCCATCAGTTACTAATTATCTGTTTCAAGGAACATGCTACCTCATTCCATTGATTGGAGGATGGTTAGCTGACGCTTATCTGGGCCGTTACAATACCATCTATGGCAGCTCATTGTTGTATGTGGCTGGAACAATTGTGCTAATGGGTGTATCCTTTAAAGGCACTGAAACACTAAAAGCTTGGCCTGATTTCCCGCATTCACATGCACTGAGAAGATTTTACTTTGTGTTTGCCTTGGTGATGATTGCATTTGGAACTGGAGGGATCAAAGCTAATGTGTCACCATTTGGAGCAGATCAAGTTGAACAAGAAGGACCAAGAGCAGTACAGACATTTTTTAATTGGTTTTACTGGTTCATTAATGTTGGATCATTAATTTCATTTACAGTTGTTGTATACGTACAAGAGTATGGTCTCTTTTATGGTTATTTAATCACAACAGGAACAATGTTTCTTGCCACGATTACCTTTGTATTAGGGCGAAACAAATACCTTACCAAACCGCCAGGTGGCAGTCAACTGTCTGAGACGGTGAAGATAATTCACAATGCTATAAAAAACCATCATTCCTCAGACACAGAAATGTGGCTGGACAAAGCTAAAACTTGTTTTGGTGGAAAGTATACAGATCGCCAGGTTGAAGATGTCAAGTTATTGCTGAAAGTTATTCCAGTGTTCCTATTGTTCATTGTATACTGGATCATTTACTCCCAGATGCAGGCGTCATTTCTGATCCAGGCTCTACAAATGAGACTTCAATTTTCTCACTTCAAAATCCCAGCAGCATCTATGTCTCTTTTTGACACATTTGCTGTTCTTACTTTTGCCCCCATAATGGACCATGCTGTGTACCCTTTTCTCAACTACTGTGGGATCAGGTTCACGCCTATGCGCAGGATTGGTGTTGGTATGCTGATAGCTGCAGTTTCAGTCGTGGTGGCTGGTGTGATAGAAATCAAGCGAAAGGCACTATTTCTCCATGAGAATCAAATTAGGCTGAGTGTGTTTTGGCAAGTTCCTCAGTTTATGCTAATTGGGATTAGCGAGGTCCTGACTGTTGTCACAGGTTTGGAGTTGGCTTACTGTCAAGCTCCAGCATGTTTTAAGGGACTTGTGATGGGAATGTTTCTTCTTACAAGTAGCCTTGGAAACTATGCAGCAAGCCTTCTTGTGGTTATCGTTCAGAAAGCCAGCAATCATCATCTTTGGTATCCACCAAGCGACAAGTTAAACAAAGGACACTTGGAGAACTTCTATTTCTTGTTAGCAGGACTCATGATTCTTAATTTTGTTGTTTTCTTGTTTGTTGCTTCGAAATATAAATACAACAGTGTTCAAAGGGAAGAAATAATCAGCGATAGCAGGGAGAGACTACAGCCAACAGGTCAAGATGACAGTTAATTATATATTAACTACCGTATGAGGGAGGGATGAATGATTAATGAGCCAAGTTTGGCACTGGGGAGTTGGAGTGAATTGTGGGCATGCCTTTTTTGTAATGTTATCCAATTAATTGTTTTAAGATCAGTCCTAAGATAATTCTTGTTCGTTTTGGTTCAACAAAGGGGGTATAGGACTCCACTTAAATTTTGCATCAAATTAACATGTACTGAACATTCAACAACCTTTGTTGCAATCTCACTCACAAAAACCCTTTTGAACATGCAGATGCATATTTTGAATTATGACACTTCCTAATAGTCAATGGAAAGACCCAATAATTATACACATAATATGCAACGCAAGAATACCACTACTTTtaatgatgatgatgataaataatggtaataggactgagtggagcacaattcaaggagttatcaggtgagtgatttcagatcagttgagtgcatagcacgaggtggatttgaaattatttttgacacaaagttctatcaccaataaactctgtcaataacacaatgcgagaaactttctaagtcaacagttgaaaaaaggctatcaaaatggaaggaaaacatacgtcaataaaagtattgacccagttaattttgtccatatttgttttcaatcaatatcgacacctgtcaacctgtttccgtaaggaattttccttgattctgattggctagtggcatgaagtgctttatttttattggctgcttaactgtccaatttaggctgtctgattacaaaaaatttaataatgtttgtaatcgggcaggtgacagatcggacagtttggaactgaaagagccaatgaagccataaatgagggctgttaacaaccactcatttgagcattttgttattgacacaattattataataatcataactatatcaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q68F72	Solute carrier family 15 member 4 OS=Xenopus laevis OX=8355 GN=slc15a4 PE=2 SV=1
Q8N697	Solute carrier family 15 member 4 OS=Homo sapiens OX=9606 GN=SLC15A4 PE=1 SV=1
O09014	Solute carrier family 15 member 4 OS=Rattus norvegicus OX=10116 GN=Slc15a4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000490 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00854 all species →	PTR2	POT family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR018456 all species →	Conserved_site	PTR2 family proton/oligopeptide symporter, conserved site	Interproscan
IPR000109 all species →	Family	Proton-dependent oligopeptide transporter family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11654 all species →	OLIGOPEPTIDE TRANSPORTER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006857 all species →	Biological Process	oligopeptide transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14638	SLC15A3_4, PHT, NPF8; solute carrier family 15 (peptide/histidine transporter), member 3/4	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.