Detailed information of amic_s0074.g51.t1 in Acropora microphthalma

Genomic Location: sc0000074_pilon:776230...804236
NR annotation: XP_044174481.1, uncharacterized protein LOC114956219 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8JHW2Thrombospondin-3a OS=Danio rerio OX=7955 GN=thbs3a PE=2 SV=2
Q9R0G6Cartilage oligomeric matrix protein OS=Mus musculus OX=10090 GN=Comp PE=1 SV=2
Q03350Thrombospondin-2 OS=Mus musculus OX=10090 GN=Thbs2 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001058 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12947
all species →
EGF_3EGF domainDomainInterproscan
PF02412
all species →
TSP_3Thrombospondin type 3 repeatDomainInterproscan
PF13385
all species →
Laminin_G_3Concanavalin A-like lectin/glucanases superfamilyDomainInterproscan
PF05735
all species →
TSP_CThrombospondin C-terminal regionFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015919
all species →
Homologous_superfamilyCadherin-like superfamilyInterproscan
IPR013320
all species →
Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR024731
all species →
DomainEGF domainInterproscan
IPR003367
all species →
RepeatThrombospondin, type 3-like repeatInterproscan
IPR002126
all species →
DomainCadherin-likeInterproscan
IPR000742
all species →
DomainEGF-like domainInterproscan
IPR017897
all species →
RepeatThrombospondin, type 3 repeatInterproscan
IPR028974
all species →
Homologous_superfamilyTSP type-3 repeatInterproscan
IPR018097
all species →
Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR008859
all species →
DomainThrombospondin, C-terminalInterproscan
IPR020894
all species →
Conserved_siteCadherin conserved siteInterproscan
IPR001881
all species →
DomainEGF-like calcium-binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10199
all species →
THROMBOSPONDINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005509
all species →
Molecular Functioncalcium ion bindingInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0007155
all species →
Biological Processcell adhesionInterproscan
GO:0007156
all species →
Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan
GO:0005576
all species →
Cellular Componentextracellular regionInterproscan
GO:0062023
all species →
Cellular Componentcollagen-containing extracellular matrixInterproscan
GO:0005886
all species →
Cellular Componentplasma membraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K04659THBS2S; thrombospondin 2/3/4/5-Glycosaminoglycan binding proteinsko00536deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP