Gene detail

Detailed information of amic_s0075.g14.t2 in Acropora microphthalma

Genomic Location: sc0000075_pilon:164176...225846
NR annotation: XP_015777488.1, PREDICTED: ATP-binding cassette sub-family E member 1-like [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0075.g14.t2

TCTGCCGGCACTACGTGGCCCTAAAATTATTCATTCATTCATAAAGTTGTGTTATTTTTCATTCAAAGTTCTTTTCCCTGCATCCTACATGGTAATGCCTTTGTTTAATCTCTTTGGCAAGGCAAATGGTGCTATTCATAAAGGAATGCCATACAAAGCATACCACGGCAGAACTGGCCAAGTTTACAATGTTGCCAAGCGTTCCCTTGGAGTAATTGTCAACAAACAAGTCAGGGGGAAGATCTTGGAAAAGAGAATAAATGTGCGAATTGAACACGTGAATCATTCAAAATGTCGGGATGACTTTTTAAGTCAAGGCCAAACACATACGGTTTTCTGCAAAGTAGCCTCACAATATCACACTTCAGTTGTGTAAGAACTTTCAATATCTTAACAAAATTAGGAGAATCCCACGAAAGAAAGGCTGGAAATTCCAAAGCAACGATTAAGGCGTCTTTGCCCTTGATGCCGATTCCATGGAGGAATTTTAATCTTTGCTCAAGAAGATGGGCCGTTATACCAAGGCAATGAGGTGTTCCTGATCTTAATCCACCAGAGACATTCATATGTTTGTTGCGCGGGTGTTTGGTAAGGCGAGACCAAGATTTCAAAATAGTGCCTTTTTCTTGGGCTATGGAAGACTCCAGAGTCTTAACGTACTCGTACAAGTTTGAATTTCCTGCAGATGGAATATTTTCGTCTCTTTTCACACTAGTTGCCACATCCTTTTCAAAACAATTGTCCTCGCGTTTCTCTTCGTTCGTTGTTTGCTCCGTCAAACTCAAGCCTTTCTCGGCCCCCGGAGCAATTGTACCTCTGAAATTTGAAATCTGTAACCAGCGATATCCCCTCAATTTTAAACAATATTTCAGAAAATAAATACTATGCAGCCGATTCAACAAAACCGCCATTTTGGATTTCAGCTCAGCTGAGACTGGAAATTAGAATATTTCCTGTCACTTACATGACGAGAAATTGGTAATATTGCACCATTTCTAACATGACAGTCTCCTGAAAATGTTCTCAAATTTTCTTTTCCTTTAAGCAATTAACGCTTTTTATTGAAAGAAATTAGTTTATTATTCACAAATAAAGAAGTCACAAATGTATTTAAAATGAAGGTCTTTTTGCTGTTCAAGACGCCTGCTAACAACGGAAGTTGACTCACATTTGCGCGCGCACTTTCCTCTCTCACGTGGCTATGAAACCCATTGCAGTTTTCCGGTGAAAATAGTAGAAATTTTAGTTTTCTTGCGGTAAATTTAAAGCCATGTCTTCTCGACTAAAGCAAAACCAGCAAACGCAGGACAAACTCACCCGTATTGCTATTGTAAGCTCTGATAAATGCAAACCCAAGCGTTGCCGTCAGGAATGTAAGAAGTGTTGTCCTGTGGTTCGTATGGGAAAATTGTGTATTGAAGTTACACCGGAATCTAAGATTGCCCACATTTCCGAATCATTGTGTATTGGTTGTGGGATCTGTTCAAAGAAATGTCCATTTGAAGCAATTACTATCATCAATCTTCCAAGCAACCTTGAGAAGGAAACCACACATCGATACAGCGCCAACTCTTTTAAGCTTCACAGGTTGCCCATTCCAAGGCCAGGTGAAGTGTTGGGATTGGTTGGAACAAATGGTATTGGGAAATCTACAGCACTGAAGATCTTAGCTGGAAAACAAAAGCCTAACCTTGGAAGATATAATAATCCTCCAGATTGGCAGGAAATCCTTCAGCACTTCAGAGGCTCAGAACTGCAGAATTATTTCACAAAGATTTTAGAAGATGACTTGAAGGCAATCATTAAACCACAGTATGTGGACCAGATTCCAAAGGCTGTTAAGGGAAGTGTACAGTCAATTCTGGACAGAAAGACAGAATTGGACAATCAAGAACACATATGTGAACAGCTGGATCTAATGACTGTACTTGATCGCAATGTAGATGAACTCTCAGGAGGGGAGCTGCAGCGTTTTGCTTGTGCTGTGGTGTGCATTCAGAAGGCTGATATTTACATGTTTGATGAACCATCAAGTTACTTGGATGTCAAGCAGCGTCTTAAATGTGCCTTGACAATAAGGTCTCTTCTTAATGACGAAAGGTACATTATTGTCGTGGAGCACGATCTGAGCGTGTTGGACTATCTCTCTGACTACATTTGCTGCCTCTATGGAGTTCCTGGCGCTTACGGTGTGGTTACCATGCCCTTCAGTGTACGAGAAGGAATCAACATTTTTCTGGATGGTTTTGTCCCCACTGAGAACCTGAGGTTTAGAGAGGCTTCGTTGGTTTTCAAAGTAGCAGAAACAGCTGACAAGGAAGAGGAAATAAAGAGGATGCGCAGATACAAATATCCTTCAATGTCAAAACAGCTGAAGGATTTTAAACTAAAAATCGATGGAGGCGAATTCACAGACTCAGAAATCATTGTTATGTTGGGAGAAAATGGAACTGGCAAAACTACTTTCATCCGCATGTTGGCTGGAAAGCTTCCATCAGACAGTGAAGAGCATGTGCCCGAGATGAATGTCAGCTACAAGCCGCAGAAAATCAGCCCCAAATCGCAGAACACTGTGCGCTTCCTCCTCCATGAAAAGATCCGTGATGCTTACGTGCATCCTCAGTTTATCGCTGACGTCATCAAGCCACTGCAGATAGAGCAGATCATGGACCAAGAGGTAGACTGGGGTCTAAGGCGTGCTTAAATGCGTCCATTTGTTATTATTGTTTTGTTTCCATGAACAAATAAATAAACAACTGCCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P61221	ATP-binding cassette sub-family E member 1 OS=Homo sapiens OX=9606 GN=ABCE1 PE=1 SV=1
P61222	ATP-binding cassette sub-family E member 1 OS=Mus musculus OX=10090 GN=Abce1 PE=1 SV=1
Q9VSS1	Protein Pixie OS=Drosophila melanogaster OX=7227 GN=pix PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006330 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR013283 all species →	Family	RLI1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19248 all species →	ATP-BINDING TRANSPORT PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0000054 all species →	Biological Process	ribosomal subunit export from nucleus	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0006413 all species →	Biological Process	translational initiation	Interproscan
GO:0006415 all species →	Biological Process	translational termination	Interproscan
GO:0043024 all species →	Molecular Function	ribosomal small subunit binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10112	msmX, msmK, malK, sugC, ggtA, msiK; multiple sugar transport system ATP-binding protein	EC:7.5.2.-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.