Gene detail

Detailed information of amic_s0075.g79.t3 in Acropora microphthalma

Genomic Location: sc0000075_pilon:904087...914448
NR annotation: XP_015754916.1, PREDICTED: transducin beta-like protein 2 isoform X1 [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0075.g79.t3

CTGGTTTTTGTTAAATTATCATTTTCACTACGTTGTTCTTGCACCGAAAACGAGCGTCTTACCCTAACAGGAAGATAAAAGTTCACTAAGCAATACTCATGAGGAGCACGAGTCTTTCTTCCATACCTTGTCGATAAATTTGCTGTGGTATACTCACGTTGAAGTCCTGGCTGCATACAGAGATTCCGGAATATTGAGAAGAACAAGTGTAAAAATTAAGGTGACAGGAACAACCATGCCAAGTGCCGCTCACCCACTGCTGGCAGCCTCCTTATCTGGACACGATTCGTTTGTAGAAGGAGTAGAATTTAGCAGTAATGGAAAATATATCATGTCAAGTTCATCAGGTAAACGAATTTTATTCTGTACCAAACAAAAATACAAAACTTCTCTTGGGATATGTTATCGTTTTTCGCGCGCGTGAAACTGCGTGCAACATCCTTGCGTTGAAAGCGAGGCTCTTGTGTGTGTCAAAAAGATGGCGGCTGAAGTTGTTTCTTATGGGATGATCTCACTAACATCTTTAATAGCCGGTGTTATATTAGCAGTTATTCTGTACATAGGGCTAAAAAGTAAAAAGGAAGAAAACTCTGATTCTAATAGGAGTGATTTGGATGAGAAACCGTCTATCATCGGAGAGAAGAAAGATATATTAAAACAGGTCAAAGGAAAGAAGAAAGCTGGAAATTTACCAGCAAAGACCCACCACAGACAATTCGCAGTTCTTAAAGGACATACAGGGCATGTGTGCGATTTGGAGTATAGTTTAAATGGAAAATATCTTGCTTCAACATCTCAAGACAGGACAGTGAGACTCTGGAGTGTGAAAGATTTTAAACAGAAAGAACACCAATATGTTAGAGCAAATGTGGAGTTTGATCATGGAACAAAAGTTACATTCAGTCCTGATACAAGagcattTATTACAGCTTTAGCAATTGGGAATACAATTCGTGTGTTCAAAGTAAGCAAAAAGAAAGAGGAATCTCGATCTTCAGTTACTGGTGAATTCGACTTTCCTGTCAAACACTCAGCAGAAATTATCAATATTGCTGTAGCCTCCCATGGGAAATTTATCATGTCCTGCTCAAGAGATACCACTATCATCCTTTGGAATCTGAAAGGGGAAGTGCTGTCAATAATTGACACCCATCAGATGAACAACAGTTTTGCCAGCATATCTCCTTGTGGCAGATTTGTTGCCTCAGCAGGTTTTACACCTGATGTTAAACTTTGGCTTGTGGAGTTTACAAAGACCGATGAATTCAAGCAGGTTTCAAGAGCAATGGAACTGAAAGGCCACACTGCTGGTGTTTATCACTTTACGTTTTCAGGAGACTCTAAGAGGATGGCTACTGTTTCAAAAGATGGAACCTGGAAAATCTGGGACATTGACGTTGAATTTACCAAGAAACAAGATCCTCATCTGCTAATAACTGGAATTTACGATGCCTCATTTAAAATCTACGACAACATGTTGATCAGCATGTCACCCGATGCTTATGTCACTGCTATCACTATGGGCCGATCAGTGGTTCTTTTCAATACAGAAAATGGCCACTTAGAAGAGATTCTACAGGATGTACATGGAGATGCTATTACAGCAATTTCGTGGCACCCCAGCTCTCGTTACCTGGCAACTGCTGGTGGCGATGACCGTGTCATTCGAGTGTGGCATAATGCAGCTGGAATCAAAGTTCAAATTGAAGATTTGCAAGGACGGTTGTACCGCACTAGGAATGAAAATGTTAAGGAGAGAATAGAACAGCAAATTCTAGAAGCCAGGGCCTCTCTGGATAAACTGAATATTATTGGTCAGTGAGAAGCAAATGAAGTGTGGAAAAGATGAGTCAATAGAATACCCTGGATCTCAAGAAAACGTACGGTTGTTCTTACACCGACAAAAAGTGACGAGTGAGATAGCCAGACATGAAATGGAAATATTTTAATTACTTCATACATGGTTTATTAATATAAAAAATTTCCTTTATGTAAAATTTTTTATTAGTACTCTTGCATACAGATGCATTTAATATTGTGTATTCTGGAGTTTTTATTATCCATGAAATCAGGTTTCAGATGTTTTTTTTCCCGTTTTTCCACTTCCTCTGGAGTCAATGTGTTTTTCGCCTTTCCTCTGATTCCACCTTCGGCAAGGAAAATGAACTGGAGTAGAGATAACCTCAATCGTTTGAACCGAAATAGAGCTATTGCAAGTCCAATGTATTGCACAAGCCCTTGGAACTGAGCTCTATAAATGCGGAAGTACAGCTGGTTCTCTCTTATTAAATTCATTGTGGTTCTAGTAGTCAACGCAGAAAGCGTAAAGAGGTGATAAAATTCAGCAATGTTGACCAAATGATCGATTTACAACGTGAAAGGAGGAAAAACACACCATTGTTTGAAAGTTCTATATGTAGTCCTCTTTGCAATTTGAGTTACCCTGACCTTACCCTCTGAAGTACGATGCGTAGGAGTTGCGGCAAGCGGGAAAATTTCCCGCCATTTCCGATGAGCACTTTGCAACCGGCGCGCGTCAGTCACTTCGCCTTCCACATGGAGCAACAGTCACTGTTGCATCATTTTTGTCATGCATCGCTTCGTTTTTAAAAGTTTCTTGTGTGTTTCGTTGGTGTGTGAAAATACTTACCCTTTCGACTGGGAAGAAAGTTAACCACGAAGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y4P3	Transducin beta-like protein 2 OS=Homo sapiens OX=9606 GN=TBL2 PE=1 SV=1
Q9R099	Transducin beta-like protein 2 OS=Mus musculus OX=10090 GN=Tbl2 PE=1 SV=2
Q9FNN2	WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002239 (this species only) · gene tree & orthology
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR042410 all species →	Family	Transducin beta-like protein 2	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44321 all species →	TRANSDUCIN BETA-LIKE PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0030968 all species →	Biological Process	endoplasmic reticulum unfolded protein response	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23325	TBL2; transducin beta-like protein 2	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.