Gene detail

Detailed information of amic_s0075.g86.t1 in Acropora microphthalma

Genomic Location: sc0000075_pilon:979597...991710
NR annotation: XP_015754912.1, PREDICTED: ABC transporter B family member 1-like [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0075.g86.t1

GTCTTCACCTGCGGTTGCCTGCATTTATCATTTTTGAAATAAGACTCCTGAAGCATTTGAGTGGTCAAGACCAAGGGTTTGCATTCCCGTCGTGCAGTTCGAGACGTGCGTGCTCTTGATGCGAGTTTTAACTGACACTGCAAAAATACGAGGCACGTTATGGTTTCTGTTTAGATCAATCAATGCAACATGGAGTACAATCAAAGGGAGAGGCATCAAAACAACATTCAAGAATCAGTAGATGATTTGGGCTCATCTCATGTTGCTGAAGGAAAAGGGAGCTATTATACTCTCCCTTCCCGACGATTTACAACTATTGTCCAAGGACTGTTGTTCCTTGACTTGGTATCATCTGTTACACTTTGGCTTTGTGGAGGAAACAATGACTATTTGGAAGAGAATGTGGAACATTTCAAGTTCAAAGAATCTGTTTTTGATTTAGCAGTAATAGCATTCCTTAGATGTAGCATTCTGTTTTTTGTCTACCCATGGCTTGAAAGTATTTCTTTGAAGCAAATTGATCAACCATATGACAAAAAGTTAGCATTTAGGAAATGTTTTTGCCATTTTCTCTGCGTTATCTTCTGTGTTGGATCTCTGACTTACAGTGTTACTAAAGGTACTCTTATCTTTGAGAAGATGACAGAAAGACATCATAAACTTCATCCAACTTACTTTGCTTTAGCTGTAACTGCTATTGTGTTTTCATTATTGGAAATGTTGTTTGCTCTGGGAAGTTTTGCTGCCATGAGGAGATTGAAAGTGCAAAGAATTCTCAACACTTCAATTAATGCAGGATCCAAGAAGAAGCAAAAAGTTAATTTAGGGCGTTTGATGACTTTGGCAAAACCGGAGCTGTGTGTGCTTTTTATTGCATCTGTTGCCCTGTTAGCCTCCAGTGGATCACAGATTGCTGCACCTTATTTCTTTGGAAGAGTGATCCAGGCTTCCATGGAAGAGGGCATGTCACACCTGAACAAAACAATTGTGCTGCTTTCCCTTATCTACCTTGCTGGTGCATTGGCAGCTTTGGTAAGGTCCTGGCTTTTTACTCTTGCTGGACAGAGGCTTGTTGCAAGGATCAGAAAACAGCTCTTTGCATCAGTCGTAGAGCAAGAAGTTGCATTCTTTGATAACAACCGCACTGGAGAACTGATCAATAGGCTGTCTTCAGACACTCAAGTGATTCAAAATGCATTGACAGTAAATGTGTCCATGTTGCTGAGGTACATTATTCAAATCATAGGCTCTCTTGCGTTTATGTTTTCACTGAGTGCCAAGCTGACAGGTGTTCTCATCTCAGTTGTGCCAATTGTTGGGATAGGAGCTCAGAGATATGGATCCTTTGTTCAGGGATTGCGAAAGAGGTTTCAAGATGAATTGGCCGCAGCATCCTCCACAGCTGAAGAGGCTATTGCCAACATTCGAACTGTCCGATCATTCTCACAAGAACGCAAATCGATGAATAGTTATGGAACAGACATCGATAAGAGTTACAAAAGTGGAGCAAAATTGGCTTTAGCTTCAGGTTTTTTTAATGGTGTTATTGGCATTATTGGTCAGGGTGCTGTTGTATTGGTTCTGTGGTATGGAGGCAGTCTGGTCAATAAGCATGAACTTGATGTTGGTATTCTAACAGCCTTCATGTTATACACACTTAATGTGGCTATGGCTTTTGCCTTCCTTTCATCACTTTATGGCGATTTCATGCAGGCTGTAGGTGCATCTGTGCGTATGTTTGAGTTAATGGATCGAATACCTTCCATTGATTTGGAAGGAGGAAAGAAATTGTCCACTGTCAATCAAGGTGCTAGGTAGATTACTATCTTGCATATTTTTATTAGGTTTTGGTGATTGACAAGGGTCACATTGTTGAACGAGGAACCCATGAGACTTTGTTGGCTAAAGCTGGTGTTTACAAGAAGCTTGTTTTGCGCCAACTGAGTGTGTCTCAGCATGAAAATTTGTCAGCTGGAGACCTGGATCCTAATTTGTTAGGGTCAGAACAACCTTCAGTTGAAGAAGTTGAAGAACCATAGAGGTGTTTTGATATGTTGAGTCCCATGATAAAAATGGCCTAGGCGTATTGTATTATTTTAGCCAACAGTGCTTGTTCCTAACTAAGACTAAATGAAACACAGACAATTGATATATGACATATTCCTATAAACTGCTTTTATTCTTATCTCAACAAATGACTCAACTAGCATATGTCATCATCATGCAGTCCAGGCAGTCTGCAAGAATCTTTTTAAGTGGTTGGGGTACAGGGCAGGTTGGTGCTTAATTCAGAGAACATGATCATATAATTATCATCCCAGCAATCTTAACCTTCTGGCACTGTTTCTATCACTGTATCTGAAGCTCTTGGAGGGTAGCAACAACAATCACACATTTGCAAATTCAGTTAACTATTTACATAAGCTCACTTTGCATCTGCTTTTGATAGCATGAAGAAACAAAATGTAACTTCATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q54BU4	ABC transporter B family member 1 OS=Dictyostelium discoideum OX=44689 GN=abcB1 PE=3 SV=1
Q9FNU2	ABC transporter B family member 25 OS=Oryza sativa subsp. japonica OX=39947 GN=ABCB25 PE=2 SV=1
Q0WML0	ABC transporter B family member 27 OS=Arabidopsis thaliana OX=3702 GN=ABCB27 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000672 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00664 all species →	ABC_membrane	ABC transporter transmembrane region	Family	Interproscan
PF10457 all species →	MENTAL	Cholesterol-capturing domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011527 all species →	Domain	ABC transporter type 1, transmembrane domain	Interproscan
IPR019498 all species →	Domain	MENTAL domain	Interproscan
IPR036640 all species →	Homologous_superfamily	ABC transporter type 1, transmembrane domain superfamily	Interproscan
IPR039421 all species →	Family	Type 1 protein exporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43394 all species →	ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0140359 all species →	Molecular Function	ABC-type transporter activity	Interproscan
GO:0015421 all species →	Molecular Function	ABC-type oligopeptide transporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0075.g86.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.