Gene detail

Detailed information of amic_s0075.g89.t1 in Acropora microphthalma

Genomic Location: sc0000075_pilon:999037...1018789
NR annotation: XP_015754913.1, PREDICTED: replication protein A 70 kDa DNA-binding subunit-like [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0075.g89.t1

AGTCGGCAGTATGCTTTGAGATTTTGGCGCGAGACGGTGGAAGAATTAGCATTTCGTTTTCATCAAGTAATTCTTATATCTTGCTCGTAGGTTTGCTTCAACAACGATGTTAACTGAAGGGGCAATTCAGGACATTTTGTTTAAGCCAGCGGAACAGCATCCTCAGAAGCCTATATTTCAGATATTAGGAATTAAAAAGATCCAAACCAAGAGCAGTGATGGAGCTGGCAATGACCGTTATAGGCTCGTGGTTTCAGATGGTATAAATCTCTATACTTCCGCCATGTTAGCCACCCAGCTCAACGACTTAGTGATCTCCAAACACATTGAAGCTAAAGCTGTTGTGCAACTGGATAAATACATATGTAACATCATTCAAGAGACAAGGAAAGTTTTGATTGTTTTGGAAGTATCTGTGTTGAAAACTGCTAATGAAGTGGTGGGAAAGATTGGAGACCCCAAACCTATAAATGTGGAATCCAAACCTGAGCAGCAACAACAACACCAGAATCTTCAGCAAAATGTCAGTGGACCAGTTCAGCGTAACATGTCAGATGACTTCCATCAGAATCAACCACAGAGGGGATCAGCAGGCCAGGTACCTGCACAGCAGCAATCCAGAGCTGGTGTCATGGGAGGTAACAAACTAGGAGCTCCTGTCAGAACAGGGGGGCTTGCCTCTGCAACTTACGGGAGCAATCAGCAAGTTTCGCGAGGAGGAAATAATCCCAAACCAGTTTACCCAATAAGTTCATTGACACCATATCAAAACAGGTGGACCATACGTGTGCGGGTAACAAGCAAATCAAATATTCGTACTTGGAGTAACTCCAAAGGCGAGGGGCGTGTCTTTAATGTTGATTTTGTTGATGAATCGGGTGAAATCAGAGCCACAGGATTTAATGATGTTGTTGACAAGTTTTATGAACTCCTGGAGGTCAACAAGGTGTACTACATTTCCAAATGTTCCTTAAAAACTGCAAACAAGCAGTATTCCTCCATCAAGAATGATTATGAGATGTATATAAACAATGATACTATCATTGAGTTGTGTCATGATCCTTGTGACTTGCCAACTATCCAGTACAACTTTGTCAGCATTGGTGACCTGAGCAACTGCAATGGAAATGATATTGTTGACATTCTTGGAGTTGTGATCAACATTGATGAAGTTTCACAGATCACGACAAAAGCATCTAACCGACAAATATCTAAGAGGGATATTATGTTGTTGGACAGATCAGAGAAAAGTGTGCGAGCAACTCTCTGGGGCGATTATGCTGAGAAATTTGAAGATCATAATGGAAAGAATCCAGTTCTTGCCTTGAAGGGAGTCAAGGTGTCAGAGTATGGAGGTCGTTCTCTGTCAGTACTGAACTCCACAAATATAATGGTTAATCCAGTGGATCTCAAAGAAGCTCACAGCCTGCGTGGATGGTACATGAATGTTGGTAAAGATACTGCTATTGAGTCAATGTCTGGGCAGAGATCAGATGGATCTCTCGGTGCTGGGAGTTACAAGACTTTATTGCAAGTCAAGTCAGAACAACTTGGAATGGGTGATAAACCCGACTATTTCACAGCAAAAGCCACGGCAGTTTTCTTCAAGAAAGACAACTGTTTGTACAAGGCTTGCCCTTCCCCAGAATGCAATAAGAAAGTTATTGAAGAAGGAGATGGAACTTATCGTTGTGAAAAGTGCAATAAAACCCATCCTGATTTCAAATATCGCCTGATTTTGTCGGCAAATTTAGCGGATTTTTCAGGTAATCAGTGGGTCACATGTTTCCAGGATTCAGCCGAGGCAATATTAAACACAAGCGCAAGCCAAATCGGTCAGATGAAGGACTCGAATGACGAGCAGGCCTATGATCAAATATTTTCCGAAGCCAACTTCAAGACTTACAACTTTAGAATCCGGGCTAAAATGGAGACCTACAATGATGAAACTCGCCTGAAGTGTTCATGCATGGGTGCAACTCCATTGGATTTCCAAAAGGAGTGCAGGCGACTTATAGAAGAGATTAAAAAGCTTCAGGCTCTTTAGATGACGCAGTACAATTGGATTATTTGGCAGACCCTTTCGCTTCGTTGTGTCCAAATTTCGGATACATGTATCTCTAGCTGTTTCAGTTATTTGTAGTCATACGGAGTAGTTTGAGTTGTTTTGTTCTTGTCGTCAAGTCACTCGGAAACGCAGTTGTCAGGGTGACGAGTATTCCCTCCTTGTCCCTCAAACCCAACACAAGACAATCCGTGCATTTCCAGTACTTCCTTTTGGTTTACATTTTTGTTTCATTGACTTACTTTGTGTTGGGATAATTGAATCATTCGTTTGACTTCAGGGCACTGTGACCTATGTTGAAGTAGAACGTGTGTGGTGAGACTCGTGTAATCTAAATTCAACAAGTGATGTGCCATTTCGTTCTACGGTTTACTCATCAATGTACCGCTCATTACTTGTGCCAGGGCGTAAGTCGCACGTGTCTATATCTGCTTCTGTTCCTTCATATTTTTATGTCCTCCGCAAAGTTCACTTTGGGTGTATTTTTCTAACTACTATCTCCATCTCGATCCTAGAGCACTTTTTTGTCAATAAGCTCTGGTCTTGAGAAGGCGTCGATGAAAAGTCTCCCGAAAAAAGTGATTCAACAGTGGCTTCAAGCACGTTTTAGGCTTGAAGAATTTTACCAGTGATAGTCAGCGTAGTTACAGTTATTGCAAGTGCGATTGCAGCGGTGTTATGTGCAATGGGCTTTCGCTTAACCAACGTCTTGAGTTGCATAAAAAGTTGCACGGGAGCGATTTTTCACGTACCATTTTAGTAATCACTGAAGTAATCATTGTTGTTGACCTAGTACTGAAAAGGCCGAGCTACTTAAAGTAAAGGACTAGAATATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5FW17	Replication protein A 70 kDa DNA-binding subunit OS=Xenopus tropicalis OX=8364 GN=rpa1 PE=2 SV=1
Q01588	Replication protein A 70 kDa DNA-binding subunit OS=Xenopus laevis OX=8355 GN=rpa1 PE=1 SV=1
P27694	Replication protein A 70 kDa DNA-binding subunit OS=Homo sapiens OX=9606 GN=RPA1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004416 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08646 all species →	Rep_fac-A_C	Replication factor-A C terminal domain	Family	Interproscan
PF16900 all species →	REPA_OB_2	Replication protein A OB domain	Domain	Interproscan
PF04057 all species →	Rep-A_N	Replication factor-A protein 1, N-terminal domain	Domain	Interproscan
PF01336 all species →	tRNA_anti-codon	OB-fold nucleic acid binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004591 all species →	Family	Replication factor A protein 1	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR007199 all species →	Domain	Replication factor-A protein 1, N-terminal	Interproscan
IPR013955 all species →	Domain	Replication factor A, C-terminal	Interproscan
IPR031657 all species →	Domain	Replication protein A, OB domain	Interproscan
IPR004365 all species →	Domain	OB-fold nucleic acid binding domain, AA-tRNA synthetase-type	Interproscan
IPR047192 all species →	Domain	Replication factor A, C-terminal, eukaryotes	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23273 all species →	REPLICATION FACTOR A 1, RFA1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003684 all species →	Molecular Function	damaged DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005662 all species →	Cellular Component	DNA replication factor A complex	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006289 all species →	Biological Process	nucleotide-excision repair	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0007004 all species →	Biological Process	telomere maintenance via telomerase	Interproscan
GO:0043047 all species →	Molecular Function	single-stranded telomeric DNA binding	Interproscan
GO:0051321 all species →	Biological Process	meiotic cell cycle	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07466	RFA1, RPA1, rpa; replication factor A1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.