Detailed information of amic_s0075.g96.t1 in Acropora microphthalma

Genomic Location: sc0000075_pilon:1098207...1130752
NR annotation: XP_029212532.2, uncharacterized protein LOC114976287 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8WUA4General transcription factor 3C polypeptide 2 OS=Homo sapiens OX=9606 GN=GTF3C2 PE=1 SV=2
Q5RDC3General transcription factor 3C polypeptide 2 OS=Pongo abelii OX=9601 GN=GTF3C2 PE=2 SV=1
Q8BL74General transcription factor 3C polypeptide 2 OS=Mus musculus OX=10090 GN=Gtf3c2 PE=2 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004348 (this species only)
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR052416
all species →		FamilyGeneral transcription factor 3C componentInterproscan
IPR013087
all species →		DomainZinc finger C2H2-typeInterproscan
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR036236
all species →		Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR019775
all species →		Conserved_siteWD40 repeat, conserved siteInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15052
all species →		RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR COMPLEX SUBUNITInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000127
all species →		Cellular Componenttranscription factor TFIIIC complexInterproscan
GO:0006383
all species →		Biological Processtranscription by RNA polymerase IIIInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K15200GTF3C2; general transcription factor 3C polypeptide 2-Transcription machineryko03021deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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