Gene detail

Detailed information of amic_s0076.g46.t1 in Acropora microphthalma

Genomic Location: sc0000076_pilon:874105...888592
NR annotation: XP_015765756.1, PREDICTED: uncharacterized protein LOC107344594 isoform X1 [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0076.g46.t1

ATGGACGAGTGTAAGTTCTTTCAAACCAAGGAAGGGTGCAGATTCGGAGATAAATGTCGATTTATCCACGTCGAAGAAATGTCTGGTTCGTCAATGGACGCTGCATATGAGAGTCGTAAATCTGGTAAATCACATTGTGGAATTGAAAACAGTGCATCTTTGGTCGAAGGAAACCAGCGAGTTCAACAGTTCCATTCACCTCCTTATAGAAAAAGGACTGGTTGTAAATTCTTCAACACAAAAAGAGGGTGTTCAAGAGGAGATAAATGTCCATTCCTTCACGGGATGCGTGATAATAATTTACAAGGCAAAACGTCTCACGGTTCTCAAATGCTTGGAAGCGAGCAAAAAGTTCTCGTGGAAAAAGAGGCGCATAACCCTCCTCAAATGAAAGATATGCTTGAACAGGTGGCTAGTAATGACAGGAAGACTAATCAGAAAACTGATGTTGACGCATCACTGGAATTTGAGGAACAATCAAGTGTTAAATATAATGAGCAAGAAGGTCATGATGCTCATGTTAGTAATTcaaggacgaagaaacaaagatcacgaaccatttcatcaaacaagaacaagaaaaagCAGGCTGAAAATAATGAAGTCATTCCACCCTTTAGACAAAAAAGCAGAGCTAAAGATAGGGGTGAAGTCTTCAAATGTGACCCAAGAAAAATCAATGAAAATGCAGTGGAAACCCCGCCGACCACAGATAAGGTTGTGAACAAATATACCATGAGTGGTGAAAGGACAGTAGGTGTATTCGCAGAAAAGAATGACACAGGGTGCCCAACTAACGACATTGAGACCAAAGGTGTGAACAAATACAAAAGTAGGGGCAGATGGCAAACCGGTGTACTCACTGAAAAGAATGAAACAGTGAGTCCAGTGGAGGCCAAAGGAGCAAAACCGCACAGAGATGTGGGCACAGATGAAGAGAGTCATGCAAAAGATGTGGTCCTAAATAAAGACAATAATATGAACAACAAGCATAAACAAAGGTATAGCAAGCCTTACTCCTCTGAAAGCTATACTTCTAATGATAGGGGAGTGTACACACTTGCAGATGCCATTTTTGCAGAGCCAAAAAGAATCCGATCAACAGAGATACAGCAACTCAAGAGACGGTTTGGGTGTAAAAATGGTTACGTTGAAATCAAGGAGAATTCAGTGTACAAAGTTCAATTCAAACCAACTGATCCTGACTGGCGATTTAAAATTGAAGCAGTTTATCTGACTGTCAGTTTCCCAGAAGATTATCCTTTACATATTTTTAGTGCATTGTTATCGAAAGAACAAGGCCTCCCAGAAAACATCTTCAGCTTTGTAAATCAAAGAATTCAAGAGTATACAACACAACAAGAACAAATGGGACATAACCAGGGTAATATGAAGATGTACTTCCGGCCATTTCTGCGATGGTTTGACAAGAATTTGGCATCTTTCTTTGCTGAGGCAGGAAAAGAGATGACAAAAGTGTTTGTTTCAAGAATGGGATTAAGCGATAAAACAGTTGGTGAAATCTATCGTGATCAACCAAAAACTATGGCCAATGCATCAGACAGTTCACCAAATAGCACACAAGATTTCTCAAACATGAATGATATGGCACCAGTTAATCAAGTTATGGAATCATATCAGAATACCATGGTGATGAAGGAGAACACTAAAAAGACAATAATTAGTAATGCTGAAATTAATGGTCGGGACGTTAGGAATACTTTCTTTGAGAACTCTGAAGATTTTATTGATGATAAAAATGTCAATGAATTAGCACATAAAGGTAAAGTCAAAAATGCATCTGGTACTGGTGTCTGTGAAGGTATGGATATTGAATCGGATTTGAGTCATCCAAAGCAGGATACAGAAGGCATCGTGGTTTGCTCTCAGGCAAGCCATGAACAAGCATGTAGTAATGAACATTCTTTGGAATCATCTTTATCAAGCACTCATGGTAATGACAGCACTCCTTTGAAAACTGTGGAGAGAGGAACTCGGATTCAGTTTAAGGGCTTACATATGGAAGAAAGTACCAGCTCAATGAGAGCAAACAAAGTTTTGTTCACTTTGGAGTGTGGCAGGTGTAAGCAGCGCATGGATCAACAGCTCACTGCAGCAGTATCTGTTTTTAAGCAGTGCACCAGATGTGCTTCAGCATTTGCTGTGATGTACCGACCAACTATCATTCATCAGTTTTCTTCCATTTTGGGATATCTTGATATAGAAGGATGTCTCCCATTTGATGTGGTGCTACCAGAATGTGAATTTATGCTGGGCTGCTTCCATTGCTCCAAGGAAACATTAGTGAAGGGTCTTCAGTATGGAGGAAACCAGAGTTGGTGTAGTCATTGTCATCAAAAACTGAGATTCCAAGTTCAATGCACTCGCTTTCAACAGCTACAGAGTGGTGTCTCCAACCCAGAAGTTTCTCTTCAAAAAAGTATGTGCGCAATTTCTAGTAATCCTTCAAAACCAAAGAAGACATTGCGAAACCCTGGACTGAAAGAAGGTCAGCCGTTGCCAGGGAATGGAACTTGCAAACACTACAAGAAGAGTTATAGATGGCTTAGGTTCCCTTGTTGTGGGAAATGTTATGCATGTGATGTTTGCCACGAAGAGGCTGAAGACCATGAAATGAAGTTTGCTACTCGCATGGTTTGTGGATTTTGCTCAAAGGAACAGCCCTATTCCCAGCAACCATGCAGTGGCTGTAAGGCTGCTGTGACGAAGTCACATTCAACTCATTGGGAAGGTGGAAAAGGATGCCGCGATAAGGTGACCATGAGTAGAAATGACAACCGAAAGTATAGACAGACTGGAAAGACAACTTCACGAAAAGCTCAAAAACAATCAGAACGGAAGGGCAAAGGGAAGTAA

Transcript

amic_s0076.g46.t1

CCCAGCTCATCGCTTCCGGTGAATTTTAGAGAATTTGATTGGATTGGTTCATGATGGTGCAATGGACGAGTGTAAGTTCTTTCAAACCAAGGAAGGGTGCAGATTCGGAGATAAATGTCGATTTATCCACGTCGAAGAAATGTCTGGTTCGTCAATGGACGCTGCATATGAGAGTCGTAAATCTGGTAAATCACATTGTGGAATTGAAAACAGTGCATCTTTGGTCGAAGGAAACCAGCGAGTTCAACAGTTCCATTCACCTCCTTATAGAAAAAGGACTGGTTGTAAATTCTTCAACACAAAAAGAGGGTGTTCAAGAGGAGATAAATGTCCATTCCTTCACGGGATGCGTGATAATAATTTACAAGGCAAAACGTCTCACGGTTCTCAAATGCTTGGAAGCGAGCAAAAAGTTCTCGTGGAAAAAGAGGCGCATAACCCTCCTCAAATGAAAGATATGCTTGAACAGGTGGCTAGTAATGACAGGAAGACTAATCAGAAAACTGATGTTGACGCATCACTGGAATTTGAGGAACAATCAAGTGTTAAATATAATGAGCAAGAAGGTCATGATGCTCATGTTAGTAATTcaaggacgaagaaacaaagatcacgaaccatttcatcaaacaagaacaagaaaaagCAGGCTGAAAATAATGAAGTCATTCCACCCTTTAGACAAAAAAGCAGAGCTAAAGATAGGGGTGAAGTCTTCAAATGTGACCCAAGAAAAATCAATGAAAATGCAGTGGAAACCCCGCCGACCACAGATAAGGTTGTGAACAAATATACCATGAGTGGTGAAAGGACAGTAGGTGTATTCGCAGAAAAGAATGACACAGGGTGCCCAACTAACGACATTGAGACCAAAGGTGTGAACAAATACAAAAGTAGGGGCAGATGGCAAACCGGTGTACTCACTGAAAAGAATGAAACAGTGAGTCCAGTGGAGGCCAAAGGAGCAAAACCGCACAGAGATGTGGGCACAGATGAAGAGAGTCATGCAAAAGATGTGGTCCTAAATAAAGACAATAATATGAACAACAAGCATAAACAAAGGTATAGCAAGCCTTACTCCTCTGAAAGCTATACTTCTAATGATAGGGGAGTGTACACACTTGCAGATGCCATTTTTGCAGAGCCAAAAAGAATCCGATCAACAGAGATACAGCAACTCAAGAGACGGTTTGGGTGTAAAAATGGTTACGTTGAAATCAAGGAGAATTCAGTGTACAAAGTTCAATTCAAACCAACTGATCCTGACTGGCGATTTAAAATTGAAGCAGTTTATCTGACTGTCAGTTTCCCAGAAGATTATCCTTTACATATTTTTAGTGCATTGTTATCGAAAGAACAAGGCCTCCCAGAAAACATCTTCAGCTTTGTAAATCAAAGAATTCAAGAGTATACAACACAACAAGAACAAATGGGACATAACCAGGGTAATATGAAGATGTACTTCCGGCCATTTCTGCGATGGTTTGACAAGAATTTGGCATCTTTCTTTGCTGAGGCAGGAAAAGAGATGACAAAAGTGTTTGTTTCAAGAATGGGATTAAGCGATAAAACAGTTGGTGAAATCTATCGTGATCAACCAAAAACTATGGCCAATGCATCAGACAGTTCACCAAATAGCACACAAGATTTCTCAAACATGAATGATATGGCACCAGTTAATCAAGTTATGGAATCATATCAGAATACCATGGTGATGAAGGAGAACACTAAAAAGACAATAATTAGTAATGCTGAAATTAATGGTCGGGACGTTAGGAATACTTTCTTTGAGAACTCTGAAGATTTTATTGATGATAAAAATGTCAATGAATTAGCACATAAAGGTAAAGTCAAAAATGCATCTGGTACTGGTGTCTGTGAAGGTATGGATATTGAATCGGATTTGAGTCATCCAAAGCAGGATACAGAAGGCATCGTGGTTTGCTCTCAGGCAAGCCATGAACAAGCATGTAGTAATGAACATTCTTTGGAATCATCTTTATCAAGCACTCATGGTAATGACAGCACTCCTTTGAAAACTGTGGAGAGAGGAACTCGGATTCAGTTTAAGGGCTTACATATGGAAGAAAGTACCAGCTCAATGAGAGCAAACAAAGTTTTGTTCACTTTGGAGTGTGGCAGGTGTAAGCAGCGCATGGATCAACAGCTCACTGCAGCAGTATCTGTTTTTAAGCAGTGCACCAGATGTGCTTCAGCATTTGCTGTGATGTACCGACCAACTATCATTCATCAGTTTTCTTCCATTTTGGGATATCTTGATATAGAAGGATGTCTCCCATTTGATGTGGTGCTACCAGAATGTGAATTTATGCTGGGCTGCTTCCATTGCTCCAAGGAAACATTAGTGAAGGGTCTTCAGTATGGAGGAAACCAGAGTTGGTGTAGTCATTGTCATCAAAAACTGAGATTCCAAGTTCAATGCACTCGCTTTCAACAGCTACAGAGTGGTGTCTCCAACCCAGAAGTTTCTCTTCAAAAAAGTATGTGCGCAATTTCTAGTAATCCTTCAAAACCAAAGAAGACATTGCGAAACCCTGGACTGAAAGAAGGTCAGCCGTTGCCAGGGAATGGAACTTGCAAACACTACAAGAAGAGTTATAGATGGCTTAGGTTCCCTTGTTGTGGGAAATGTTATGCATGTGATGTTTGCCACGAAGAGGCTGAAGACCATGAAATGAAGTTTGCTACTCGCATGGTTTGTGGATTTTGCTCAAAGGAACAGCCCTATTCCCAGCAACCATGCAGTGGCTGTAAGGCTGCTGTGACGAAGTCACATTCAACTCATTGGGAAGGTGGAAAAGGATGCCGCGATAAGGTGACCATGAGTAGAAATGACAACCGAAAGTATAGACAGACTGGAAAGACAACTTCACGAAAAGCTCAAAAACAATCAGAACGGAAGGGCAAAGGGAAGTAAATGGACTGCAGGTGTTCCACCAGAGGAAAAATGCCGACACACCAAGCCAGAATGACTGATATGATGTCAAGATGTGTTGTGAATGTTATTTAATTGATAGTTGAGCAAAAAAATGCAAGGAAAATAGTTATTGTCTGATGTTAAATTTATAATACAGTAGAATCCAGCTTAAGGGAAATCCAAAACAGCTTGACCTAGCTGTGGTTTCTGTTATAGGGGCTGGTGTGTGATTTCAAAGTGCATCATTGCACCCATATGCTTAGTATTCAGTGAACAATCTAAATCAGGTAATATCCATCAAACTTGCAAAGCAGGCTATATAATTCATCTACATGGTATCTTCTATGCAATACAACATTCACACCAAAAAAATTGCAATTCTTCACAACatactatttttgtaatataattttatgcaatgt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O60140	Uncharacterized protein C18H10.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC18H10.09 PE=4 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006325 (this species only)
Transcription factor family	zf-CCCH · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18044 all species →	zf-CCCH_4	CCCH-type zinc finger	Domain	Interproscan
PF05495 all species →	zf-CHY	CHY zinc finger	Domain	Interproscan
PF14608 all species →	zf-CCCH_2	RNA-binding, Nab2-type zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036855 all species →	Homologous_superfamily	Zinc finger, CCCH-type superfamily	Interproscan
IPR008913 all species →	Domain	Zinc finger, CHY-type	Interproscan
IPR041367 all species →	Domain	E3 ligase, CCCH-type zinc finger	Interproscan
IPR037274 all species →	Homologous_superfamily	Zinc finger, CHY-type superfamily	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan

PANTHER

No PANTHER signature was detected for amic_s0076.g46.t1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0076.g46.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.