Gene detail

Detailed information of amic_s0076.g49.t1 in Acropora microphthalma

Genomic Location: sc0000076_pilon:904673...933539
NR annotation: XP_029197228.2, AP-3 complex subunit beta-2-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0076.g49.t1

ATGTCTTACAACGCTGAAAGGCCTATTGCAGAGCGTGATGTTCCTGAAACGCAGACTGGTGGGTTGTTTTCGAGCGATTTTCAAAGGCATGACGATCTGAAGACGATGCTAGATAGTTCCAAGGACAACCTCAAACTGGATGCAATGAAGAAGATGATAGGAATGATGGCTGATGGTAGGGACATCTCTGACCTTTTTGCAGCAGTAGTGAAAAATGTGGTTTCTAAGAATGTTGAGGTCAAGAAGCTGGTTTATTTGTATCTTGTTCGATATGCCGAGGAGCAGCAAGACTTGGCCCTCCTTTCCATCAGCACATTTCAAAAAGGACTGAAGGATCCCAACCAGCTTATCCGTGGAAGTGCTCTTAGGGTTCTTTCTAGCATTAGAGTCCCTGTGATTGCACCTATTATGATGTTAGCAATAAAAGAGGGTGTGTCTGACATGTCTCCTTATGTGCGTAAAACTGCTGCTCATGCCATTCCTAAGCTTTACAGTTTGGATCCCGAACAGAAAGATTATCTTATTGAGGTTATAGAGAAACTTTTAAAAGACAAAACAACACTCGTTGCAGGTAGTGCTGTGATGGCTTTTGAAGAAGTTTGTCCTGAAAGGATTGATTTAATTCACAAGAACTACCGAAAGCTGTGTAATTTGTTGATTGACATAGATGAGTGGGGACAAGTAGCTGTGATTCATATGTTGACAAGATATGCAAGAACACAGTTTCTTGATCCAAACAAAGAGCCTCTATCTGAGGAATTTTATCCCAAGTCGGATAACTCTGAAGAATCTGAGAATTCTGATGATGAGGAAAATCCTACAGCTCCAAAGAAGCAGACGTATGTAATGGATCCTGATCACAGGTTGCTTTTGAGATCATGCAAGCCCCTTCTTCAGAGTCGAAATTCTTCAGTTGTGATGGCCGTAGCAAGAGTTTATCATCACTTGGCACCTGAAAATGAGATTGGCTTAGTTGCACGCTCATTGGTCAGACTTCTCAGAAGCCACAGGGAGGTTCAAACAGTTGTTTTGAGTAACATAGCTACAATGTCAGCATTTTCAAAGGGAATGTTTGAGCCTTACCTGAAAGGCTTCTTTGTTCACTCAAATGATCCGACTCATATTCGTTTGTTAAAGCTTGAAATTATGACAAATATTGCTGGAGAGACTAGCATTGGGACAATACTCAGGGAATTTCAGAGCTATATTTCCAGTGCTGATAAGCAGTTTGTAGCTTCAACCATTCAAGCTATTGGTCGCTGTGCTTCCAACATTTCAGAGGTGACAGACACCTGTCTGGCAGGCTTGGTCAGACTTCTCTCTAATAGAGATGAGGTTGTTGTGGCAGAGAGTGTTGTAGTAATTAAAAAGCTTCTACAGCTTAAGCCCAAAGGAAATTCAGATATTATCATGCACATGGCAAAGTTAGTGGATTCAATTACGGTGCCAATGGCCAGAGCAAGTATACTGTGGTTGTTGGGAGAATACTGTGAAAGAGTCCCCAAGGTAGCACCAGATGTTCTCAGGAAGATGGCTAAATCATTTGGATCAGAGGAAGACATAGTCAAGTTACAAATCCTCAATTTAGGTGCAAAGCTCTTTATCACAAACCCCAAGCAGACAAAACTTCTTGGTCAATACGTCTTGAATCTGGCAAAGTATGATCAGAGTTATGATGTCCGAGACAGGGCTAGGTTTTTACGTCAGCTACTAATTCCAAACGATACGGCTCCTGTGAAAAAGCCTACGAAGTCTCCACCTAAAGCTAGTAAACCAGAAAAATTGTCAAGTAAAACAGCCTCTGCACCAGATAAAGGAAACACCCTGTTGATTCTGGATGATTTGGATGAAACAGCGAGTGCCAGTGTTAGTTCTACATCCACCAACATCCTGTCTCCCAGTTTGGCTTCTGAAATGGAATCGTTATCTCTGACCAGTGATGTCAAAACTACCGTCATAGCTCCTCTCAGCTCAAGCTTCTCTTCAGCAAAATCCTATGAGCTGCTTCATCGCATGCAAGGCAAAGGACTCAGTGGTAGTTTCAAGTTTACGCGAGGTCCCTGTATATATGCGACCAATATGGTGGCTGTTGAAGTCACATTAGTTAACAACTCAGACGCTTCAATTTCGAACATACATGTGGCTGAGAAGAAACTTGCTTCAGGCATGAGTATGCATGAATTTCAGGAAGTTGCATCACTGGCCAGAGGAGCAACAATCTCAGTGACATTAGGGATTGATTTCAATGACACAACACAGCCAGCAAATTTTAATTTGTGTACGCTAAACAACAAATTTCCAGTGAGCATCAAGGCTCCTGTTGGAGAATTACTACAAGTATGTCCTATGAGTGAGGCAGATTTCCTGGCCAAACAAGGAAAGCTACGGGGCTTGAATGAGAATTCAGGAAAGCTGGATATTCCTGCTGATGCAGCTTCTGAAGAGAAAGTTTGTTCAAAGCTTAAGGAAGCAGCCGCTGTCTCCTACATTGGCTCTGAACACCTTCCTGACGGTGACTCCAACTACAGGTTTGCTGGCCGCACTATCTCTGGAGGAACTTTTGTTCTTGTGACTGTAAATGTCAAAGCAAGTGGGAAGGACTGCTCTATTACTGTGAATTGTGAAAAGATGGCAATTGGTTCCATGCTTGTTAAGGAAATCAAACTAGCTTTGCAGTAA

Transcript

amic_s0076.g49.t1

TTCTGAAAATCACCTGATTATTCCCTGAAAGCGTTACTTAAAATGTCTTACAACGCTGAAAGGCCTATTGCAGAGCGTGATGTTCCTGAAACGCAGACTGGTGGGTTGTTTTCGAGCGATTTTCAAAGGCATGACGATCTGAAGACGATGCTAGATAGTTCCAAGGACAACCTCAAACTGGATGCAATGAAGAAGATGATAGGAATGATGGCTGATGGTAGGGACATCTCTGACCTTTTTGCAGCAGTAGTGAAAAATGTGGTTTCTAAGAATGTTGAGGTCAAGAAGCTGGTTTATTTGTATCTTGTTCGATATGCCGAGGAGCAGCAAGACTTGGCCCTCCTTTCCATCAGCACATTTCAAAAAGGACTGAAGGATCCCAACCAGCTTATCCGTGGAAGTGCTCTTAGGGTTCTTTCTAGCATTAGAGTCCCTGTGATTGCACCTATTATGATGTTAGCAATAAAAGAGGGTGTGTCTGACATGTCTCCTTATGTGCGTAAAACTGCTGCTCATGCCATTCCTAAGCTTTACAGTTTGGATCCCGAACAGAAAGATTATCTTATTGAGGTTATAGAGAAACTTTTAAAAGACAAAACAACACTCGTTGCAGGTAGTGCTGTGATGGCTTTTGAAGAAGTTTGTCCTGAAAGGATTGATTTAATTCACAAGAACTACCGAAAGCTGTGTAATTTGTTGATTGACATAGATGAGTGGGGACAAGTAGCTGTGATTCATATGTTGACAAGATATGCAAGAACACAGTTTCTTGATCCAAACAAAGAGCCTCTATCTGAGGAATTTTATCCCAAGTCGGATAACTCTGAAGAATCTGAGAATTCTGATGATGAGGAAAATCCTACAGCTCCAAAGAAGCAGACGTATGTAATGGATCCTGATCACAGGTTGCTTTTGAGATCATGCAAGCCCCTTCTTCAGAGTCGAAATTCTTCAGTTGTGATGGCCGTAGCAAGAGTTTATCATCACTTGGCACCTGAAAATGAGATTGGCTTAGTTGCACGCTCATTGGTCAGACTTCTCAGAAGCCACAGGGAGGTTCAAACAGTTGTTTTGAGTAACATAGCTACAATGTCAGCATTTTCAAAGGGAATGTTTGAGCCTTACCTGAAAGGCTTCTTTGTTCACTCAAATGATCCGACTCATATTCGTTTGTTAAAGCTTGAAATTATGACAAATATTGCTGGAGAGACTAGCATTGGGACAATACTCAGGGAATTTCAGAGCTATATTTCCAGTGCTGATAAGCAGTTTGTAGCTTCAACCATTCAAGCTATTGGTCGCTGTGCTTCCAACATTTCAGAGGTGACAGACACCTGTCTGGCAGGCTTGGTCAGACTTCTCTCTAATAGAGATGAGGTTGTTGTGGCAGAGAGTGTTGTAGTAATTAAAAAGCTTCTACAGCTTAAGCCCAAAGGAAATTCAGATATTATCATGCACATGGCAAAGTTAGTGGATTCAATTACGGTGCCAATGGCCAGAGCAAGTATACTGTGGTTGTTGGGAGAATACTGTGAAAGAGTCCCCAAGGTAGCACCAGATGTTCTCAGGAAGATGGCTAAATCATTTGGATCAGAGGAAGACATAGTCAAGTTACAAATCCTCAATTTAGGTGCAAAGCTCTTTATCACAAACCCCAAGCAGACAAAACTTCTTGGTCAATACGTCTTGAATCTGGCAAAGTATGATCAGAGTTATGATGTCCGAGACAGGGCTAGGTTTTTACGTCAGCTACTAATTCCAAACGATACGGCTCCTGTGAAAAAGCCTACGAAGTCTCCACCTAAAGCTAGTAAACCAGAAAAATTGTCAAGTAAAACAGCCTCTGCACCAGATAAAGGAAACACCCTGTTGATTCTGGATGATTTGGATGAAACAGCGAGTGCCAGTGTTAGTTCTACATCCACCAACATCCTGTCTCCCAGTTTGGCTTCTGAAATGGAATCGTTATCTCTGACCAGTGATGTCAAAACTACCGTCATAGCTCCTCTCAGCTCAAGCTTCTCTTCAGCAAAATCCTATGAGCTGCTTCATCGCATGCAAGGCAAAGGACTCAGTGGTAGTTTCAAGTTTACGCGAGGTCCCTGTATATATGCGACCAATATGGTGGCTGTTGAAGTCACATTAGTTAACAACTCAGACGCTTCAATTTCGAACATACATGTGGCTGAGAAGAAACTTGCTTCAGGCATGAGTATGCATGAATTTCAGGAAGTTGCATCACTGGCCAGAGGAGCAACAATCTCAGTGACATTAGGGATTGATTTCAATGACACAACACAGCCAGCAAATTTTAATTTGTGTACGCTAAACAACAAATTTCCAGTGAGCATCAAGGCTCCTGTTGGAGAATTACTACAAGTATGTCCTATGAGTGAGGCAGATTTCCTGGCCAAACAAGGAAAGCTACGGGGCTTGAATGAGAATTCAGGAAAGCTGGATATTCCTGCTGATGCAGCTTCTGAAGAGAAAGTTTGTTCAAAGCTTAAGGAAGCAGCCGCTGTCTCCTACATTGGCTCTGAACACCTTCCTGACGGTGACTCCAACTACAGGTTTGCTGGCCGCACTATCTCTGGAGGAACTTTTGTTCTTGTGACTGTAAATGTCAAAGCAAGTGGGAAGGACTGCTCTATTACTGTGAATTGTGAAAAGATGGCAATTGGTTCCATGCTTGTTAAGGAAATCAAACTAGCTTTGCAGTAATACGCTTATTTTTTAGTAATTAAATCAACTTAAAATGAATTATATGTGATGCACTGTAAAAAATTTGCAGGAAACTGAGATGACTGTCATCATTTCACCAATTCTCTATTAAGCATCACTTATCATTGAATTTGACATTAATTTTTCAAATTTATCAATCTTCAATCATAATAATGTTAATTTTATTGTAGACCTAACCCTAAACCttagggtggccgaatacagttttcaagttcctatgcctaattcaccattacttttaaactctatatgatttggcacccattttttgcaagagtcaaggttaaccacagaagactttattctcgcattttggtttagatgtgtgctgttgccatggcaatggggctggttaaaaacatggcttaaaaaatggtttttgtgtatttaaaaaaaatccagttattagatttcttttatcgtttgcccagtaccaattgacaggaaatcccttgtgtcaacactgttctaataaaattttcacataggccattttcgtaattcgcagttaatcgttttctgtagtattaaaaattccctctgtcaaaattcagatttttcatgatagatcattcatgtggttactaaactagtttttggccaaatttcttgaaattccaaggactggattgttagaaattggcaagtttctgcaaaggcaacgagtctcaaAACTGTAGTGttacacaacaccactgacctcgcggaaactgtgttcggccaccttaaGTGTAACTTATCTTTTCAAGTTCAAACTTTCCAAGTTTTACATAAACATGTTCGCAATTAAATTATTAATAATTATTACAAAATTAATCTATATCTATTTGATGGTAGCAGGAGAACAGGAATGAGCTTTTACAAAGGAATTTAAAGTTGCCTTTATCCCAAAGAAGACTTCCATTGGCAATATGGTTACTAATATTATGTTGAAAAATATGCTCCCCTGTGGCAGATCAGTATGTGCAACTTTAGCTCCAAAGAAAAAACTGAAATTTGTTTATTTCACTTATTTTGCTTTAAGCAGAAAAATAACAGTACTATTTGGCTGAAAATCGCCAAAACAAAATAATGTAACTGGAGTATTTGAAGGAAAGCTGAAAATGAATACCGTATTTCTTTACCCTGTAAGCCTATCTCAGGTGTGAGCCGAGACCCTAAAAGTTAGAGACCTTCCAAAAGACTTGTCTTGTCTGAAAAAAAAAATTAAAACCTCTGAATTCAGCAATTGTGTTTGAATCCTAAACCCTTGGCTCTAAGCCAAGCCCTGTTTCTTATGAAAAATCTCCCCAATCTCAAAAAATATGTCAAAAAATGAAAAGTCATTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q13367	AP-3 complex subunit beta-2 OS=Homo sapiens OX=9606 GN=AP3B2 PE=1 SV=2
Q9JME5	AP-3 complex subunit beta-2 OS=Mus musculus OX=10090 GN=Ap3b2 PE=1 SV=2
Q7YRF1	AP-3 complex subunit beta-1 OS=Canis lupus familiaris OX=9615 GN=AP3B1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003541 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01602 all species →	Adaptin_N	Adaptin N terminal region	Repeat	Interproscan
PF14796 all species →	AP3B1_C	Clathrin-adaptor complex-3 beta-1 subunit C-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026739 all species →	Family	AP complex subunit beta	Interproscan
IPR026740 all species →	Family	AP-3 complex subunit beta	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR002553 all species →	Domain	Clathrin/coatomer adaptor, adaptin-like, N-terminal	Interproscan
IPR029390 all species →	Domain	AP-3 complex subunit beta, C-terminal domain	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11134 all species →	ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0030123 all species →	Cellular Component	AP-3 adaptor complex	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0030117 all species →	Cellular Component	membrane coat	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12397	AP3B; AP-3 complex subunit beta	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.