Gene detail

Detailed information of amic_s0076.g8.t1 in Acropora microphthalma

Genomic Location: sc0000076_pilon:169246...183093
NR annotation: PFX21652.1, Transposon Ty3-I Gag-Pol polyprotein [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

amic_s0076.g8.t1

ATGGTCGAAAATAACTCGAAATGGAAAACCAATGTGCTCATCAGAAACCACAATGTTAAGTTCAGGATCGACACGGGAGCGGATGTCACAGTCATCCCTGAAGACATCTTTCGTCGATTCAAGTTAGGACGACTACAAAGTACTTCGAAAAAGCTCTGCGGGGCCGATCAAAAAGGTCTATGCGTTATGGGAGAAATTCGAGAAAAGTTGACGCTTGGAGAAACTTGCGTGACCGAAGATATTTATGTCATCAAAGGTCTTAAAGAGCCACTCCTTGGCCGACCAGCTATTGAAAAACTGAACTTATTCGCCAGAATCAACGACATCCGGAGCCCATGTTCTGACGAACAGATTAAGAAGAAGTATCCACAGCTCTTCCACGGACTGGGAGAACTCGAAGGAGAATACGAAATCCAGTTAACGCCAAACGCACAACCATTTGCTATTACTTCCCCACGACGAATTCCTCTTCCGATGAAGGACaaagttaaagtcgaaatcgcgaggatggagaaacttggagttatcagaaaagtagaacagcctacagaatggtgcgctggaatggtcactgtacccaagccaaacgggaaagtccgaatctgcgtcgatctaactaaactgaatgaaagtgtatgtcgagagacttacccacttccaaaaatagactctctcctgggagagattggagcctctactgtgtttagcaagttagacgccaactcagggttctggcaggagaagttagcagagaaatctcagcttctaaccactttcctaactccttttggtagatactgtttccaacgacttcctttcggtttgaaatcagcacccgaacgatttcAGGGAAGAATGCTCACTGAGTTAGAGGGCCTGGACGGTGTAATCTGTATCATGGACGACATCTTGGTACATGGCGATCGAGTATACGTCCCCGACCGCCGAGAGAATGCTGTAGTTGTTGTCAAGACTCCTGAGCCAAGGTCTTATCTCATTGAATCTGACAGCAACGCTGCCGTAAGACGAAACAGAAGGCAGCTCACTCCTAACCCAAAAGATACTGCAGTGCCTCCAGGAGATGTGCCCCAGAATCCAGCTATGAATCCTCCTGGACAAATCCCGGGTAAAGCAGAAAAGGCTCGAGAACCAGTACAGAAGCCGAATTCAGAAATTCCAGTACCTTCTACCCGCTCTGGACGAAGAGTTGTCCCTCCCAAAAGACTAGctaaggaagagagggagtatattatggaaccaGctgAagaccaacactctatgagagagtatggagtggctggtggattttgtccacCttcccaggaatacaaaaagccaccacagctcagtatcaagctgaaagaagctggtgatgttccaaaatccacagaaacgtggagagatgatcatctgccaatcgatattttactattagccgttgggagctgtgacttcttgagctgtttctccttgctggataaaccattcaaaagttccaagaaggtgattggttatgtgtactttggaggcatgggagatgccagtaacttgcaaaagctaaagattgcattgatgacctgcgcttcaggagctgcaacaccaggaggctctttaacagcagttctgaatgcagttagagtcttgcggcctaaggctgcacttttggtgggaacttgccttagtctaggcgtggagaaggtcagaatgggagatgtagtcatatcttcaaaactaactgcagagggacttagaactcctgtcagcccacttctttgtagtcttattcaagatgcaccatatggatgggttgctccattggaaaatccagatgagttgaaagttactgtacatcgcaatggtgacatcctgagccagtcacagagagagaattgtcgatgtgatgatatttgtgagcaatatcctggggcagttgcaattgagacagaaggcataggtacaatatctctgaaaattacattggttaatactttgtttccttag

Transcript

amic_s0076.g8.t1

CTAAAAATGTCACTTGCAGTGCATGTAAGTAGAAAGGCCATTTCGCAAAAGTTTGCAAATCTTCCAAACGAGTTCAAAGTGTTGATGACGACTCCAGTGAAGATGACGTCTCCGTAATAACCATTGGCGAAGCTGTCAACATGGTCGAAAATAACTCGAAATGGAAAACCAATGTGCTCATCAGAAACCACAATGTTAAGTTCAGGATCGACACGGGAGCGGATGTCACAGTCATCCCTGAAGACATCTTTCGTCGATTCAAGTTAGGACGACTACAAAGTACTTCGAAAAAGCTCTGCGGGGCCGATCAAAAAGGTCTATGCGTTATGGGAGAAATTCGAGAAAAGTTGACGCTTGGAGAAACTTGCGTGACCGAAGATATTTATGTCATCAAAGGTCTTAAAGAGCCACTCCTTGGCCGACCAGCTATTGAAAAACTGAACTTATTCGCCAGAATCAACGACATCCGGAGCCCATGTTCTGACGAACAGATTAAGAAGAAGTATCCACAGCTCTTCCACGGACTGGGAGAACTCGAAGGAGAATACGAAATCCAGTTAACGCCAAACGCACAACCATTTGCTATTACTTCCCCACGACGAATTCCTCTTCCGATGAAGGACaaagttaaagtcgaaatcgcgaggatggagaaacttggagttatcagaaaagtagaacagcctacagaatggtgcgctggaatggtcactgtacccaagccaaacgggaaagtccgaatctgcgtcgatctaactaaactgaatgaaagtgtatgtcgagagacttacccacttccaaaaatagactctctcctgggagagattggagcctctactgtgtttagcaagttagacgccaactcagggttctggcaggagaagttagcagagaaatctcagcttctaaccactttcctaactccttttggtagatactgtttccaacgacttcctttcggtttgaaatcagcacccgaacgatttcAGGGAAGAATGCTCACTGAGTTAGAGGGCCTGGACGGTGTAATCTGTATCATGGACGACATCTTGGTACATGGCGATCGAGTATACGTCCCCGACCGCCGAGAGAATGCTGTAGTTGTTGTCAAGACTCCTGAGCCAAGGTCTTATCTCATTGAATCTGACAGCAACGCTGCCGTAAGACGAAACAGAAGGCAGCTCACTCCTAACCCAAAAGATACTGCAGTGCCTCCAGGAGATGTGCCCCAGAATCCAGCTATGAATCCTCCTGGACAAATCCCGGGTAAAGCAGAAAAGGCTCGAGAACCAGTACAGAAGCCGAATTCAGAAATTCCAGTACCTTCTACCCGCTCTGGACGAAGAGTTGTCCCTCCCAAAAGACTAGctaaggaagagagggagtatattatggaaccaGctgAagaccaacactctatgagagagtatggagtggctggtggattttgtccacCttcccaggaatacaaaaagccaccacagctcagtatcaagctgaaagaagctggtgatgttccaaaatccacagaaacgtggagagatgatcatctgccaatcgatattttactattagccgttgggagctgtgacttcttgagctgtttctccttgctggataaaccattcaaaagttccaagaaggtgattggttatgtgtactttggaggcatgggagatgccagtaacttgcaaaagctaaagattgcattgatgacctgcgcttcaggagctgcaacaccaggaggctctttaacagcagttctgaatgcagttagagtcttgcggcctaaggctgcacttttggtgggaacttgccttagtctaggcgtggagaaggtcagaatgggagatgtagtcatatcttcaaaactaactgcagagggacttagaactcctgtcagcccacttctttgtagtcttattcaagatgcaccatatggatgggttgctccattggaaaatccagatgagttgaaagttactgtacatcgcaatggtgacatcctgagccagtcacagagagagaattgtcgatgtgatgatatttgtgagcaatatcctggggcagttgcaattgagacagaaggcataggtacaatatctctgaaaattacattggttaatactttgtttccttagagacaaatgacagtaatacagtagtaatacaagaaatttaatagagtcaacactaaatg

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR035994	Homologous_superfamily	Nucleoside phosphorylase superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR001995	Domain	Peptidase A2A, retrovirus, catalytic	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0009116	Biological Process	nucleoside metabolic process	Interproscan
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan