Detailed information of amic_s0077.g10.t2 in Acropora microphthalma

Genomic Location: sc0000077_pilon:279347...320725
NR annotation: XP_029205080.2, histone-lysine N-methyltransferase SETD1A-like isoform X1 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q1LY77Histone-lysine N-methyltransferase SETD1B-A OS=Danio rerio OX=7955 GN=setd1ba PE=1 SV=2
Q8CFT2Histone-lysine N-methyltransferase SETD1B OS=Mus musculus OX=10090 GN=Setd1b PE=1 SV=2
Q5F3P8Histone-lysine N-methyltransferase SETD1B OS=Gallus gallus OX=9031 GN=SETD1B PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004285 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00076
all species →		RRM_1RNA recognition motifDomainInterproscan
PF11764
all species →		N-SETCOMPASS (Complex proteins associated with Set1p) component NDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000504
all species →		DomainRNA recognition motif domainInterproscan
IPR024657
all species →		DomainCOMPASS complex Set1 subunit, N-SET domainInterproscan
IPR035979
all species →		Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR046341
all species →		Homologous_superfamilySET domain superfamilyInterproscan
IPR012677
all species →		Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR044570
all species →		FamilyHistone-lysine N-methyltransferase Set1-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45814
all species →		HISTONE-LYSINE N-METHYLTRANSFERASE SETD1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan
GO:0042800
all species →		Molecular Functionhistone H3K4 methyltransferase activityInterproscan
GO:0048188
all species →		Cellular ComponentSet1C/COMPASS complexInterproscan
GO:0051568
all species →		Biological Processobsolete histone H3-K4 methylationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K11422SETD1, SET1; [histone H3]-lysine4 N-trimethyltransferase SETD1EC:2.1.1.354
Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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