Gene detail

Detailed information of amic_s0077.g25.t1 in Acropora microphthalma

Genomic Location: sc0000077_pilon:799762...812556
NR annotation: XP_044174565.1, AMSH-like ubiquitin thioesterase 2 isoform X2 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0077.g25.t1

ATGGGACTTCAAGCCCTATTTGCATATAGCGATCAATAGCACCTTCAAGGCAGACATTACAATCTACATTGATAAAACTTCAAATGCTAATTGACATTAACTATGAGGAGCCTCAAAAAATGCGTCTACAAGATGAGTAGCTTTCTCCAGTGAAAAGTTTCTCCACTCAACGTTAAGACGAAGTTCGACAGGCGGTTGCGAATTACGTCACTACTGATCTAAGAGAATATCACAGTGGACTTTTCACTTGGTGTACTTGAACATGGAATTATTACCACCTGAGCGATAGGTATACCACAGTGCTTTGTATATGGAATGCTGACAGCAAGATGGCGAAAGAACGAGATCCAGCGAGAAGAGTACGTGAACTTGTTCAATCTGCAGGTCAAGTACGGGTTGATAATAGTATAGCACCAAAGAAATACTTTAGATCGGGTATTGAAATGGAGAAAATGGCAAAGATTTACCATGATGAAGGAGATTTGGAAAGTGCCCTTATTCTGTATTCCAAGTTTATCACTTTATTTGTGGAAAAACTCCCTCATCATCCTGAGTATTCCAAAGTGTCACAAGTGGATAAGTCCAATAACAAGAAGTACACCAACTGTGGATAGATCAACTAAACCAGTGATATCTTCAGATGATTCTTCAGCAAGTGGTTTGAGGAAAATTCATATTCCTGGGGATCTTGTTAGCTACTTCCTGCGCCTTGCTTCAGAAAACACTCGAAAGGACTTGGAAACTTGTGGCATTCTTACTGGTCGCCTTCAAAAGAATATGTTCTTTGTCACTCATTTATTGATTCCCAAGCAAACATCAACTTCTGATTCGTGCACCACACTGAATGAAGAAGAGTTGTTTGAATTCCAGGATTCAAAGGACCTTATAACCTTGGGTTGGATTCATACTCACCCATCACAGACAAGTTTTATGTCCAGTGTAGATCTCCATACACACTGCAGCTATCAACTGATTATGCCTGAAGCTATTGCTATTGTTTGCTCTCCCAAGTATAGTGAAACCGGGGTTTTTTCGCTTACACAAGAGTATGGGCTTCAATTTATCGTAAACTGCAGACAAACAGGTTTTCATCCACACCCTAAAGAGCCTCCTCTTTATCAGGAGAGTTCTCATGTAGTATGGGACAAGATTGCCAGGGTTGAGGTGGTGGATTTAAGATCTAAGAGATGAAAAGAATCCTTGGTACAGCATATTGCGCACTAGTACCAGTCAAAGACATGACATTCTATTTTTGAAACACAGAGTTTCACAATCAGGCAAGCACTCGTCTGATGACGATGTAAGCATGAAAGTCAGAGTTATTGAAAATTAATGAGAATATAACAGTATTGCATTGTTTTGCAACAAACATCAAGCACTTTTATGCAATGAAGACTCCATTGCCCTCTATACAGTGTATATAAAGACTATTCACATAAATAAAATAATGGAGTATTACAGGGTTCGAAATTAACTAAACAGTCCAGTCGCAATTTTGCgacaggattcgaaaattatagtagcaatattatttagtaaaattttgtcgcaaaatcgtcgcgctgcattgtgttgtccgcgggtaagcaaaacaaaatataaagcccgcaatacttgtgtaaaggaaccgctaaaagtgtccaatgattgaaggaaTTAACGTCattgaaagaaaattcacgacaagaaacgaaacggttttattatttctttatttcctttagcaaaagttgcggcaagtggtaactgccaacccttatgtttcgagagagcgaaggtgaaattaaatcgcaaaattgctaattctcgaaatattttagtcgtaaaattgcgacttctccaaatatgttagacgcaaatttgcgacttctctaaatattttggtcgcaaagtgagccctgCAGTACTACTAGTTattaaactgattttgcaccaggacgggagcgttacatgacgacgggtgggtgcgtcatagtctggattttgttctaatttgaccatatttggatatttgtactgcgcgcgccgtcgcgtcaagtgaggttcccgctctctttctaaatttaaatcagccaattaTAAAACGGGGAATGGAATACGTAAGTGACAGCATTAAATTCAGATTTTATTCCAGGCTTTAAACCCAATTCTAGAATTTTTCTTTACAAATTAAGAGAAAAAACACATAGCTAGACCACTTTGAATAATTTATATCTTTTGCTAAGATAAGTTAATCTGACCATATGTTCTGAAATCAGTCTTTCATTTAAAATTTAGAAATTCGGACATAATTTATGTATATCCCGAGTTTGTTTCGTGTGTCTTTGATTTTTTAAGAGTATAATCTTACAAGTTCTGAAATCACTCCAAAAGTAATTTTTGTGACTCTTTTTGGGACTCTTTTTTTTAACAAATGAATATTTGCCCGACCCAAAGAATTAGGATGGAAATGCAAGCACCAACAAATGCCGCAAATACAGCATTCTGAAGTTCACGGTAGCATATACATGTGAAGCTTATTGATTGGCTCAGTTTCTGTTAGTATTGGTTTGCCAACCACATACAAGCGTTTTAGCGGCAGCAACAACTGAACACTTGGCTAAGTTCATTCAGTTGTGTTATTGGAAACAAGACCAAATGAAACTGTATCTGCTTCCAAAGTAATAAATAAATCATCCTATTCAAGCTGCCACTGTAATATACACAGATGAAAATGTTTATGAGACCTTGAGGTCTACTTGTTTATTAAAAATATACGTTGTACAAGCTAAGTCTCACAGAACATTGAGGTCTCTTTTATTTTAGAAAAATAAAGAAAGCTGTTGTTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O95630	STAM-binding protein OS=Homo sapiens OX=9606 GN=STAMBP PE=1 SV=1
Q9CQ26	STAM-binding protein OS=Mus musculus OX=10090 GN=Stambp PE=1 SV=1
Q6TH47	STAM-binding protein-like A OS=Danio rerio OX=7955 GN=stambpa PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005538 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01398 all species →	JAB	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000555 all species →	Domain	JAB1/MPN/MOV34 metalloenzyme domain	Interproscan
IPR044098 all species →	Domain	STAMBP/STALP-like, MPN domain	Interproscan
IPR037518 all species →	Domain	MPN domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12947 all species →	AMSH-LIKE PROTEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008233 all species →	Molecular Function	peptidase activity	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan
GO:0061578 all species →	Molecular Function	K63-linked deubiquitinase activity	Interproscan
GO:0070536 all species →	Biological Process	protein K63-linked deubiquitination	Interproscan
GO:0140492 all species →	Molecular Function	metal-dependent deubiquitinase activity	Interproscan
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11866	STAMBP, AMSH; STAM-binding protein	EC:3.4.19.12	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.