Gene detail

Detailed information of amic_s0077.g5.t1 in Acropora microphthalma

Genomic Location: sc0000077_pilon:169361...175835
NR annotation: XP_015763716.1, PREDICTED: somatomedin-B and thrombospondin type-1 domain-containing protein-like [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0077.g5.t1

TGTGATCCCATTCCAGACGTCCGGCAAGAGGTGAACAGTAACGATTCGAGTCGGTCTCGCCGCTATGGAATTTGCGAAACACCTTTCTTTGGTGTTCGCCATAACCATTGCATTTAGCGTCACTACCTTAGCTAACAGTGTTTGTTTACAAAAGGAAGACGGTGAGTCCGTACAATGTTGTGATAAAAGAGAAGATGGCGGATCAGTAATTTGTTGCAGTGGACGAAACAGTAGTTGCGGAATGGAGGACTTCGTCAACAACGCGTTGTGTTTCTGCGACGAGTTCTGCGAAAGAGCTGGTGATTGTTGTCCTGACTTTGAAAGTATAAAAGAACCATGTGGCTTTGGAAAAGTGAAACGAGACTGTGAAGTATCGCCTTGGTCTGACTGGGGTCCCTGTAGCCCACGCTGTGGTGTAGGAGTGAGTCAAAGAACTCGTACTGTTTTATTCTTACCTATGAATGGAGGCAAGGAATGTCCTGCGCTCATTGAGAACAAAGGCTGCCTTAAACAGCTTTGTGGAGGAAGAGAACATGGCTTTGCTCGCATTCTTCCCTACAAGTTCAAGAAAGATCGTGAACCATCAGTATGGGAAAAAATCTTGCCGGCACCTAAAGAAATAAAAAAGAAGGAAAAACCGAAAAGGTCAAGTTACTGCGTCAACTTCAAAGTTTTCTTCAAACATCCTCACTGTAAAAACACATGGGCTGATCAACTGGATCCTAAAAAACCAATTTGCGTAGAGTGTCAACACGAAGCGATGGATAAACGCGGCAAATGTAAAGGTCAAGGCATGTTTGGCGAGGTGACTCTCTGGGAAGCGGTCGACCTCAAAAATTGTTATGGAGGCTGGCTAAAAATTGGTCCAAGGATTCCTGGCTGCAAATGCGAAAACAAACAATTCAGTAATTTCATATTTATATGAAAGACTTAAGATGTCAAACGTTTCTTTGTTTTCAACTTGTTCTTTTCTAATAGAACCTCGACGGTCTGATTTTGTACCGATTATGTCAGTTTCGTCCGATTCATTCAATTCATGAGATGACCAACGCTGAAGCaatataccttcttagcttgtatgttttgtttcccatttcagaccacgtgatgccctcatgggaattttccttttgtttttttcattaattatgcgtacatttgcacgtgcataagacggcaattgaaagaaactattcgctcgagtagcatcacgtggtctgaaatttgaaaacaaaacatacaagttaaagaaggtctattGCCGTCGCCGTTGTCCATAATTTCCTTTTTTGTTTTGCTATGTTCACATGGAGCTCAAACAATCACGATGGCGATGGCGACAACAGTTGCAGTCATTCTTCCTCgttcgtctccaaacctcaattaaattctgggatggttggtgcacattttgccgctaaccgacttgcagtaatcgagaatttatagtagaaacgcaaagttccattttttacggatattctCGTCGACCTTGCCAAAGTCTCTTTTTTGCGTGTACTAGACGGGAGACTATTAAAAGGAGGCTATGTCATGGATCCAGCTATTTTTAGAGCAGTATTCTGATGGTTTTCGCTCTGATCCGTATAATTGGCTCTTACCTACCCATATGTATGCAAGGATTCTGATAGGATACAAGGCTCTTTGTGAGTCTGAACATAGCACGGTTCGTGATCTGGCCGTAAGTTAAGTACACAAATTAAAAGTTAACGGCATCTGCCTCAGTTCATAGGCTCTTGCACTGATATTAAAATAGATTACACTGTCTTGCAATCCAGACGATGCATGATATTCGCGTTCGAGGAAGGAAAAAGAAAAACCGGTAATGAAACTGAAGATTGAAATCTCTTTCTGTGTATCAGTTATTCGCCtttaaccctttcattcccaagaggttccccattgacgagtaaaactgtctggcgtcagacagagtaaaatctgtaagtgccctgtgggcacctacgggagtgacagggtTAAATCATCCACGTGACGAAGACACTGGATATTGTTGGTGACCAGTCCCTTAAGCCACTAGGTTGGTGTCCCTTTTTCATCAAGAGACGTGTCTCTTGTAAAGGGTTGAACCATCGTAAGCCATTCGTCAGAACTCTCCCTCTTGCATTTTACCCACGTTTTGTTTCTCTTTTTCCAGTCAGATCAAATGCCATTTTTCTGTGCAAACTATGAACGAAAGTTATGGCATTCCTGTTTGAAATGGTTTGTTTATTTCAGAGATACTTCTAAGCTGTTTAGACGCGTTAACTTATCCTTTATTGTATATTTTTTAAAGTGCACCAGTCTTCTAAGAAGATTTTAAAGGCTGTAAGAAACTAAATTGCTTTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7MBS7	Thrombospondin type-1 domain-containing protein 7A OS=Danio rerio OX=7955 GN=thsd7aa PE=1 SV=2
Q69ZU6	Thrombospondin type-1 domain-containing protein 7A OS=Mus musculus OX=10090 GN=Thsd7a PE=1 SV=2
Q9UPZ6	Thrombospondin type-1 domain-containing protein 7A OS=Homo sapiens OX=9606 GN=THSD7A PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007137 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19028 all species →	TSP1_spondin	Spondin-like TSP1 domain	Domain	Interproscan
PF01033 all species →	Somatomedin_B	Somatomedin B domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR001212 all species →	Domain	Somatomedin B domain	Interproscan
IPR039942 all species →	Family	Somatomedin-B and thrombospondin type-1 domain-containing protein	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR044004 all species →	Domain	Spondin-like TSP1 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20920 all species →	RPE-SPONDIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for amic_s0077.g5.t1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0077.g5.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.