Gene detail

Detailed information of amic_s0078.g35.t1 in Acropora microphthalma

Genomic Location: sc0000078_pilon:1192764...1209958
NR annotation: XP_015770069.1, PREDICTED: E3 ubiquitin-protein ligase MIB2-like isoform X4 [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0078.g35.t1

ATGGTCTCCATCCTTGGCCGCATTGCAAAGGTGCTGGACGTAGATGGGAATGGGGATTTGGTGGTTTTAGTTGAAGGCGATAGATGGCTGTTGAACCCAGCGGCTGTGACACGTGTCACTGATCCGGAGGTTGTTCACGGCAAAAACGACAGTGATCATGCCAGTGAAATTCCTCTAGTTCATCAGCTTTTCAGAGATTTTCTTCAGCAGACTGGAGTTGCTGATCTCGGCAGCCAGGAACTCATAGTCGCCTGCAGACAAAATATGCTTTCAAGAGTTCGTGAGATTCTTGCTAATAATCCCGAATTGATTGACGCAATGGCAGGTGGTCACACAGCTCTTCATATTGCATGCCACGAAGGGCACTGTAACATCATAAGGGAGCTGATTGACAGTGGCGCTGATAAAGACAAAGTGGACCTTCAAGGATACACAGCAATTCATCATGCTGCCTACGGGGACAAAACTGGCGAAGCATTGAAATTTTTATTGAGCAAAGGTTTCGATCCTAATGTACAAGGCAGAGAACATGGAGGCTCGCCGTTGCACCTGGGGGTGAAAAAAAACAACGAGATGGCTGTTCGCATCCTGACGCAGCACCCGACCTGTGACATCAATTTAAAGGACCAAGAAGGCAATACTCCCCTCCATTGCGCCATTGCTGGTGAGGAGCACAACATGGTGGATATGCTAGTGAACAACACAAGGCTCATGGCGGCGATTACCAATCATAAAGGCTTCAATTATCTTCAGTTTGCTGTTCTTAGAGGAAACAAACCCGCTGTTGAAAAGCTTGTTGAGAAATATGGAAGCACCCTTAATGTTGCCAAAGATGATGGGTTTACAACACTGCATATTGCTGCCATAAATGGATATCGAGAAATTGCCGAGATCCTGTTGGAGCAGCCCGGCTGTAGTGTCAATGCAGCGGCAATTGAAAATCAGACTCCTCTTCATTTGGCCGCTGAGGAGGGCTACCCAGATATGGCGGAGGTCCTTTTAGACCATGGTGCCCATGTTAATGCATCGAACGATGATGGAGACACACCACTTCACCTCTCCCTAAAGAGGGAGTTGATGTTCAAGAATTCCGAAATGCAGCCAGCTCTTCATATGTTTCTTGCCTTACGGGGACGTGGTAGTAGAGGTAACGCTGCAGTTTCTAGATGTTTATTGAGTTACGGAGCTGATGTACGACGGAGAAATAACACAGGTGAAACACCGCTGGACAGATGTAGAGGCACAGAAGTTGAACAGGTCATCCAACATATTGCATCTACAGGGAATTCAAAGGCCACAAAAGTTCCAACTTTTGGAGGAGCAACTAGTCATCCTGGATTTCCACACCAAGGAGGCAATTATTCTACAGAAGCAGACAAACATGGTGAAGCTGTTCATCATAGTAACGTTACAGAAACCAATAAAAGCAGACGCAGTTCCAACGATGAGGGAGGACATGGGCAAGATTCGGATGAAAAAATGAACGAATTTCAAGAAGAAGAAGAAGTACTTCAAGACGAAGAGCAAAGTGAGGATGCCATTGTGCAGAATGACTTTGCACAGACTTCTATGCCACTGATACAGAATGTGTTTCTCGAAGCTGTTAATCAAGTGCTAGACACATCCCTTAAAGAAATTTCAAATACAAAGCTGAACACTGCAGCCGTTGCAAAGAATAATAATGATGCTGGAGATGCAGACCTCTCGCAAGATAGAAGCAGTGCACTATCAAAAACACCAAATGAAACCTCCGAGATGATTGAAACAGCAAAGGCTGATTCAGAAATGGTAGATTTGGCAGATGAAAAGAATACGGCCGAGGAGACAGAAACTAAAAGGGACAGGCTAACCTGTAGGATCTGTGAAGAAAATGAGGCTGTGGTCACATTTAAGCCTTGCGGACACATTATACTTTGCACAGAATGTGCACCTCGATTGAAGCGTTGTTTGGAATGCAAAACACAAATTACCGGAAAAGCCAGAATCGATGGAACCCCCGTCATCAATGTTAACAACAAGTCACTGGCCACGAAATACCAGGCATTAGAAAGAAAAATGAGAAAGCTGGAGGAATCCATCGAATGCTGCATTTGCACTGAAAGGAGGAAGAACGTAGTGTTCCCGTGCGGTCATGGAACTTGTCGGGAATGTGCAGATCAGCTGGTGATCTGCCACATTTGTCAGAAAAAAATAACGAAGAAAATTCAAACATTTTGA

Transcript

amic_s0078.g35.t1

GTCGCAGCATTTCTTCACCTCAGTCGAAGGAGAAACAGTCACCGACATTTTCATTATCGCGAAACTTAAAACTAGCGATTTCAGACGGATCGATCCAATTTTGGGATTCGCATCGTTGCTACCGATAAAATAAGCGTGTGGATAATAAGGCTTACTGGAAACGAGGCAAGTAAACAACGGCACAAGTTACATTCAAATTAAATTTTATTCAGTTAAGTTCTGATTCAGTAAAATAAGATGGAGTTCCTTGGAGCGCGCGTGGTTCGCGGACCCGACTGGGAGTGGAGTAACCAAGATGGAGGCGAGGGAAGCGTTGGAACAGTTGTTCAAATTGGAAGTGATACAAAATCGGCGATCACAGAACCAATCGTTTTGGTCCAGTGGGATTGTGGAAGAAAAGCAACTTACAGAGCTGGAATGGATGGCAAATATGATCTTCGAATTCTTGACACTGCAAATGGAGGTGAAAGGCATCTTTGCATTTCCTGTGATGGGTGCCAAAGGAGCCCTATTGTTGGATCTCGCTGGCATTGCAAGACATGTCCAAATTATGACTTGTGCACACTGTGCTACATGACGGATTGCCATAATAAAGGGCACACGTTTGAGCGAATTGACAAAAGCCGGGGCAAAGGAGTTGACGTTGGGACAAGAAGGGAATCCACCAAATTAGAGGCTCGTGGGTTATTTAAAGGAGCGAAAGTTATCAGAGTTCCTGACTGTGAAGTGAACGATCAAGGTGGCGACCCAAACGTTGTCGGCGTGGTTGAGGAGGTTGTAAGCTATAGTGATGAGGATAACAACGGTTCTGTGCGCGTTTCGTGGAAAAAGGGAGGACAGACATATATTTATAGAGTTGGCAAAGGTGGAAAAGTCGACCTAAAGTGCACCATGCCTGCCACTGGTGGAAGCTATTATAGAGACCACCTACCACTACCGGCATTTAAACAAAAGAAGTCACAGAGCGGTTTTACAACCGGCGAAAAAGTCATCGTGGAGCTCACATGCAAACAGCTTGAAGAGTCATCCGCAGGACATGGCGAATGGAACGCAGACATGGCCAAATTTATCGGAAAAGTCGGCCTTGTGCAGGATTTTACTTCAAGCGGTGACGTTGTTGTGGAGTACCCAGAAAAAAGATGGCGTTACAATCCAAAAGCTCTGACAAAGGTCCAGCAAATTAAGCGAGGAGACGAGGTCTTAGTGAAGACAGATAAGGACTTGGTAAAGGGACTACAAGTTGACCACGGAGGGTGGAATGAAGCAATGGTCTCCATCCTTGGCCGCATTGCAAAGGTGCTGGACGTAGATGGGAATGGGGATTTGGTGGTTTTAGTTGAAGGCGATAGATGGCTGTTGAACCCAGCGGCTGTGACACGTGTCACTGATCCGGAGGTTGTTCACGGCAAAAACGACAGTGATCATGCCAGTGAAATTCCTCTAGTTCATCAGCTTTTCAGAGATTTTCTTCAGCAGACTGGAGTTGCTGATCTCGGCAGCCAGGAACTCATAGTCGCCTGCAGACAAAATATGCTTTCAAGAGTTCGTGAGATTCTTGCTAATAATCCCGAATTGATTGACGCAATGGCAGGTGGTCACACAGCTCTTCATATTGCATGCCACGAAGGGCACTGTAACATCATAAGGGAGCTGATTGACAGTGGCGCTGATAAAGACAAAGTGGACCTTCAAGGATACACAGCAATTCATCATGCTGCCTACGGGGACAAAACTGGCGAAGCATTGAAATTTTTATTGAGCAAAGGTTTCGATCCTAATGTACAAGGCAGAGAACATGGAGGCTCGCCGTTGCACCTGGGGGTGAAAAAAAACAACGAGATGGCTGTTCGCATCCTGACGCAGCACCCGACCTGTGACATCAATTTAAAGGACCAAGAAGGCAATACTCCCCTCCATTGCGCCATTGCTGGTGAGGAGCACAACATGGTGGATATGCTAGTGAACAACACAAGGCTCATGGCGGCGATTACCAATCATAAAGGCTTCAATTATCTTCAGTTTGCTGTTCTTAGAGGAAACAAACCCGCTGTTGAAAAGCTTGTTGAGAAATATGGAAGCACCCTTAATGTTGCCAAAGATGATGGGTTTACAACACTGCATATTGCTGCCATAAATGGATATCGAGAAATTGCCGAGATCCTGTTGGAGCAGCCCGGCTGTAGTGTCAATGCAGCGGCAATTGAAAATCAGACTCCTCTTCATTTGGCCGCTGAGGAGGGCTACCCAGATATGGCGGAGGTCCTTTTAGACCATGGTGCCCATGTTAATGCATCGAACGATGATGGAGACACACCACTTCACCTCTCCCTAAAGAGGGAGTTGATGTTCAAGAATTCCGAAATGCAGCCAGCTCTTCATATGTTTCTTGCCTTACGGGGACGTGGTAGTAGAGGTAACGCTGCAGTTTCTAGATGTTTATTGAGTTACGGAGCTGATGTACGACGGAGAAATAACACAGGTGAAACACCGCTGGACAGATGTAGAGGCACAGAAGTTGAACAGGTCATCCAACATATTGCATCTACAGGGAATTCAAAGGCCACAAAAGTTCCAACTTTTGGAGGAGCAACTAGTCATCCTGGATTTCCACACCAAGGAGGCAATTATTCTACAGAAGCAGACAAACATGGTGAAGCTGTTCATCATAGTAACGTTACAGAAACCAATAAAAGCAGACGCAGTTCCAACGATGAGGGAGGACATGGGCAAGATTCGGATGAAAAAATGAACGAATTTCAAGAAGAAGAAGAAGTACTTCAAGACGAAGAGCAAAGTGAGGATGCCATTGTGCAGAATGACTTTGCACAGACTTCTATGCCACTGATACAGAATGTGTTTCTCGAAGCTGTTAATCAAGTGCTAGACACATCCCTTAAAGAAATTTCAAATACAAAGCTGAACACTGCAGCCGTTGCAAAGAATAATAATGATGCTGGAGATGCAGACCTCTCGCAAGATAGAAGCAGTGCACTATCAAAAACACCAAATGAAACCTCCGAGATGATTGAAACAGCAAAGGCTGATTCAGAAATGGTAGATTTGGCAGATGAAAAGAATACGGCCGAGGAGACAGAAACTAAAAGGGACAGGCTAACCTGTAGGATCTGTGAAGAAAATGAGGCTGTGGTCACATTTAAGCCTTGCGGACACATTATACTTTGCACAGAATGTGCACCTCGATTGAAGCGTTGTTTGGAATGCAAAACACAAATTACCGGAAAAGCCAGAATCGATGGAACCCCCGTCATCAATGTTAACAACAAGTCACTGGCCACGAAATACCAGGCATTAGAAAGAAAAATGAGAAAGCTGGAGGAATCCATCGAATGCTGCATTTGCACTGAAAGGAGGAAGAACGTAGTGTTCCCGTGCGGTCATGGAACTTGTCGGGAATGTGCAGATCAGCTGGTGATCTGCCACATTTGTCAGAAAAAAATAACGAAGAAAATTCAAACATTTTGACGTTGTCGGTCGTATGTTGCATACGCTATACTTATGGCTGTTTTAGCAACTTTAATGATAAGCCTATGCCCCGATATTTTGGCCGGCTTTGCTTTACTTACGTCTATTTGAGCAACTTCAGTGATAAGTCCATGCCACGATGTTTTGGCTTCG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A9JTP3	Baculoviral IAP repeat-containing protein 7 OS=Xenopus tropicalis OX=8364 GN=birc7 PE=2 SV=1
A9ULZ2	Baculoviral IAP repeat-containing protein 7-B OS=Xenopus laevis OX=8355 GN=birc7-b PE=2 SV=2
Q8JHV9	Baculoviral IAP repeat-containing protein 7-A OS=Xenopus laevis OX=8355 GN=birc7-a PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000489 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13857 all species →	Ank_5	Ankyrin repeats (many copies)	Repeat	Interproscan
PF13637 all species →	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF13920 all species →	zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24202 all species →	E3 UBIQUITIN-PROTEIN LIGASE MIB2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0078.g35.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.