Gene detail

Detailed information of amic_s0078.g64.t1 in Acropora microphthalma

Genomic Location: sc0000078_pilon:1725842...1744980
NR annotation: XP_029211459.2, DNA replication licensing factor MCM3-like isoform X1 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0078.g64.t1

GCTTTCGTCGGTACTATTCGCCCATTTCCATCGATTTGTCGCTTTTAAAATGGCTTTGGATAATGAACAATACTTGCGACAGCTTCAAAGGGAGTACCTCGACTTCTTGGATGACGACGAGGACCAAGGAATTTATCATGAGAAAGTCCGTTCCATGATCAGCAAGAATGAATACAGATTGATTGTCAACTTGAATGATCTCAGGAGAAAAAATGAAAAACGGGCAATTGAAATCTTAAACAATTCTTTTGAGGAGTTAATAGCATTTCAGAATGCATTGAAAGAATTTGTTAGTTCCGCGGACACTTCTTATGGCAAGAAATATGAAGAATTCTTTGTAGGATTTGATGGAAGCTTTGGATCAAAACATGTCACACCTAGAACTCTTTCATCTCATTTTATTGGAAACATGGTCTGCGTAGAGGGCATTGTCACCAAATGTTCCCTTGTGAGGCCTAAAGTTGTTCGCAGTGTACATTATTGCCCTCAGACAAAGAAGACTCTTATCCGAAGATACACAGATTTGACCTCACTTGATGCTTTCCCATCAAGTACTGTTTACCCAACCAAGGATGAAGATGGAAATCCTTTGGAAACAGAGTATGGTGAATCTTCATACAAAGATCATCAGACTTTCACGATTCAGGAAATGCCAGAAAAGGCACCAGCTGGTCAACTTCCTCGTTCTGTTGATATCATTGCTGATAATGACTTGGTTGACAAATGCAAGCCAGGAGATAGAGTGCAAGTTATAGGCATGTATCGCTGTCTTCCATCCAAGAGATCAGGGTTTACTCCAGGGACATTCAGAACCGTTTTGATTGCCAATCACATTCAAGTCATGAGCAAAGAAATTGCTCCCAAGTTCTCAGCCTCAGACATTTCCAACATCAAGAAGTTCAGCCGTAGTAAGAAGACCGATGTGTTTGAAACACTGGCGCAGTCTTTGGCGCCATCAATTCACGGCCACGAGTACATCAAAAGAGCTGTTTTATGTCTGCTGTTGGGAGGAACAGAGAAAGTGTTGGAAAATGGAACAAGACTCAGAGGTGACATCAATGTTCTTCTCATTGGCGACCCGTCAACAGCAAAATCTCAGATGTTGAGGTATGTCCTTAACTCTGCTCCTCGCGCCATTCCAACGACTGGGCGTGGTTCCTCTGGCGTCGGTCTGACAGCTGCGGTAACAACAGACCCAGAGACAGGAGAACGTCGTCTTGAAGCGGGGGCTATGGTGCTTGCAGATAGAGGCGTGGTTTGCATTGACGAGTTTGATAAGATGAGTGACCTTGATCGAACAGCCATTCACGAGGTTATGGAGCAAGGAAGAGTTACAATTTCCAAAGCTGGTATTCACGCCAAGTTGAATGCGCGGTGCTCTGTGTTGGCTGCTGCTAATCCAGTGTATGGAAGGTATGACGAGTACAAGAATCCGATGGATAATATCGGAATGCAAGACTCTTTGTTGTCGCGTTTTGACCTTCTGTTCATCGTACTTGATCAAATGGACCCGGACAACGACCGTAAAATCTCCGAACACGTGTTGAGGATGCACCGATACAGAAAACCGGGCGAACAAGAGGGGGAGGCATTGCCTTTTGGAGTTACGATGGAGACGCTAGCAACACAAGATCCGGAAGAAGATGACGAGGAAGCAGCCACTCCTATTTTTGAAAAACACGACGCCATGTTGCACGGCCCGAGAAAGGATCGCAAGGACAACTTCGTATCAATGGCGTTCATGAAGAAGTACATTCATGTTGCGAAGAGTACAAAGCCTCGCTTGACAAAAGATGCTGCGAACAAGATTTCCAAAAGTTATTCAGAGCTGAGAGATCAAGAAAACGTTGGAAACGAGACAGCGAAGACTATGCCTGTAACTGCTCGAACATTAGAAACCTTGATACGTTTAGCAACAGCACATGCCAAGGCAAGGATGAGCAAAACGATCGACGAGAACGATGCGAATGCTGCCATCGATATGATTTCGTTTGCCTATTTCCACAAGGTGGAGAAAAAAGATAAGGGCAAGCGGAAGAAAGGTTCAGGTAACGAACAAAGTGAAGAGGAAGATGGCGAAGATGATGACGAAATTGAAACAAGCCAATCACAGCGAAAAACGACCAAAACAAGCAAACCACATGCTAAGAAGCAAAAAGTTGCTACGAAAAAAGGAGACAGTAGTCAAGACCCCTACGGGTTTGATTCTGACGATGAAATGCAAGAAACTGCAGATGTTGTTGAAAAGATAAAGCGCCGAAGGTCTTCAAAAGCGAGAGATTCCGCGGAAGAACGTATGGACACAAGCGAAGAAAGTGCAACTGTCGCAATGTCAAACGAGAGACTTGCTGAATTTAAGACGGCCTTGTTGGGGGCGTTTTCATCTGCGCATGCGCAGTCTTTGCCTCTGTCCACCGTGAAAGGTTCTATCAAGTCATTCACTGAACAAGAGATAGACTCAGCTTTGCAAGTTATGCAAGACGCGAATCAAATTATGGTGGCCGAAAACAACGTGTTCCTCATTTAACTAGTTTAAATCAAAGCAGAAAACGTCTGCTTTAATGGTTTTGCGTTATACATTATTTGTCAGCAGTTACCTTTTTTGGAAGAGTTTAAAGTTGTAAAACGAAAATTAAATTGATAGATTATCACAGGAGGCGTGCAAAACGAAGCTAACCAATTAGAAAAGGAAATCGAGCTCCATGAAGCACGTGCTGTGATTGAAACGTGGGGAAACATGCGCCCGAGCCAATGGCGCGAAATATTGGTTGCAGAGAGTGGGTAGTGGGTAATCGATTATTTTGAATTGTTTATGTTCTTTGTCTGGAGTAATCTTTTGCATTTGTAATCAGTTTTCATTAACGTTATACAAAAAATACTTATGTTCAATAAAAATACTCATCTTAAGAAAATACTCATCTTCAATAAAGACTAACAGTTTTCATAAATACTAACAGGTTTCAACAATCTCTATACATTTTTCTTTTGTTTCTACAAACCTTTCATGGTTTTATTTGGATTTACAACAGTTCAATAAAAATACTCATCTTAAGAAAATACTCATCTTCAATAAAGACTAACAGTTTTCATAAATACTAACAGGTTTCAACAATCTCTATACATTTTTCCTTTGTTTCTACAAACCTTCCAAGGTCTTATGTAGATttataacaatcagcaaagccacccaatttcagttaatagattttcgtcattagcgtgctccataatgttatggacgcacgtgatgtcacaatgacgcCATTAAACTAGAGACAACTCCCAGCAGTCATAGGATGCAATTAAGAAGGAGGTTCTTAGACTTAGGATTTGCATATAGTGCCAGTCGGTGTCGAACGCACGGGCGGGGCGTGCAAAAGTGTTTCAAAATGTAAAGCGCACGTGCATAGCGCACAAAAATGTTTCAGTGTCAAACTCTTGCGCGGGGAATGCAAAAATGTTTCAAAATGCCAAACACACGTGCGGGGTCTTATTGGTCGACATCGTCGTTGCCAGGACGACTATGCCAAAGTCTAACACGCACATGCGCGAAGTGATGACTCCTTGTTATGTTCTGTCACTTTTCGTTTTTGACGCGTTGTTGTCGCCGAATGTGACAAgatattcttgtgtcctttaggcttaaata

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A4FUD9	DNA replication licensing factor MCM3 OS=Bos taurus OX=9913 GN=MCM3 PE=2 SV=1
Q28BS0	Zygotic DNA replication licensing factor mcm3 OS=Xenopus tropicalis OX=8364 GN=zmcm3 PE=2 SV=1
Q7ZXZ0	Zygotic DNA replication licensing factor mcm3 OS=Xenopus laevis OX=8355 GN=zmcm3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003859 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00493 all species →	MCM	MCM P-loop domain	Domain	Interproscan
PF17855 all species →	MCM_lid	MCM AAA-lid domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031327 all species →	Family	Mini-chromosome maintenance protein	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001208 all species →	Domain	MCM domain	Interproscan
IPR041562 all species →	Domain	MCM, AAA-lid domain	Interproscan
IPR018525 all species →	Conserved_site	Mini-chromosome maintenance, conserved site	Interproscan
IPR008046 all species →	Family	DNA replication licensing factor Mcm3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11630 all species →	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0032508 all species →	Biological Process	DNA duplex unwinding	Interproscan
GO:0000727 all species →	Biological Process	double-strand break repair via break-induced replication	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006271 all species →	Biological Process	DNA strand elongation involved in DNA replication	Interproscan
GO:0017116 all species →	Molecular Function	single-stranded DNA helicase activity	Interproscan
GO:0042555 all species →	Cellular Component	MCM complex	Interproscan
GO:1902975 all species →	Biological Process	mitotic DNA replication initiation	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0006270 all species →	Biological Process	DNA replication initiation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0078.g64.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.