Gene detail

Detailed information of amic_s0079.g31.t1 in Acropora microphthalma

Genomic Location: sc0000079_pilon:666702...678337
NR annotation: XP_015778091.1, PREDICTED: T-complex protein 1 subunit epsilon-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

amic_s0079.g31.t1

TTACGCGATTCTATTTGGAAACACTGCTACAAAATCCAAGTTAATCGACAAAGCTAGTCAGTTTGGCTCCTTCAATAAATCGGAAAAGATGTGTGCAATGCCTATGCAAGCACGTCCGCAGGGTATCACCTTCGATGAGTATGGCAGGCCGTTCATAATCCTCAAGGAACAAGAGAGACAAAGAAGGTTGACGGGGCTCGATGCTCAGAAGTCTCATGTTTTAGCAGCCAAAGCCGTAGCGAACATTCTTCGTACTTCACTTGGTCCGAAAGGTATGGACAAAATGATGGTGAGTCCAGACGGGGATGTTACTGTCACCAATGATGGTGCGACCATTTTGGACATGATGCAGGTTGAACACCAGGTAGCCAAACTGATGGTGGATCTGTCAAAATCACAAGATGATGAAATTGGGGATGGCACAACGGGAGTTGTTGTCCTTGCAGGGGCACTTCTTGAACAAGCTGAGCAGCTGTTAGACTGGGGAATCCATCCCATAAGAATAGCAGATGGCTATGAGTTGGCAGCCAAGATTGCCATTGAAGAGCTGGACAAGATCTGTGACAGCTTCCCCGTCAACAAAGATAATCCAGAGTCGTTGATACAGACAGCCATGACTACGCTAGGATCAAAAATTGTCAGCCGATGTCACAGGAAGCTGGCAGAGATTGCTGTGGAAGCTGTACTTTCTGTGGCAGATCTCGAAAGGAAAGATGTAGACTTTGAACTTGTTAAGATGGAAGGCAAAGAAGGTGGCAGGCTGGATGACACAATGCTAGTCAAAGGAGTTGTTGTAGATAAAGATATGAGCCATCCTCAAATGCCTAAGATCATAGACGAGGCCAAGAGGAGTTTACACGATGCTCTCTGCGTAGTTAGAAATCTTGTTCGTGATAATCGAGTGGTTTATGGCGGAGGGGCGACCGAACTGGCCTGCTCTTTGGCTGTCACAAGGGAAGCTGATAAGATATCCACACTTGAGCAGTATGCTATGCGAGCTTTCAGCGATGCCCTGGAAGCCATCCCTTTGGCTCTAGCTGAGAATTCAGGCCTGAATCCCATTCAAACAGTTGCTGATATCAAATCTTGTCAAGTGGCCGAAGGAAATCCAAGGCTTGGTGTGGATTGCATGGATACTGGAATCAATGACATGAAAGAACAACACGTGATCGAGACCTTGATTGGCAAAAAACAGCAGATAAGCTTAGCTACCCAACTAGTGAAGATGATCCTGAAAATCGACGACATTCGGACCCAAGGAGACTCGTAATATGTTGGCCGAGTCGAACAGTGCCATTATTTTGTTGCGCGACACTCGAGTCACGCAACAAAGCTTATCGTGACGCCTTAATGGAAAAATTCAAATTTATCAAACTGGAAATATAGTGTATTCAGATTTGAAAGTTGCGTGACGAGGCGCCAGAAAATTTTCTGCGTGGTGGCCTATCGTTAGTGGCAAAAGAGCTTTGTGATTGTCATAGAAGTCTTGATAGGCGAAGAAGAATATATTTGAGCCAGAGGCCTGAATGAAGCTCACTTCAGGAGCTGGTTCGATCCCAGAAATCGTGTGTCCCAGTCTTTATAGCAATCTACGTCAACCTTGTTCCCAGGGCTCCTTTCCTCACTTTGGCCCACGGAAAGAAAAGAGCCCTGGAAATGAGTGACGCCGTTATGGTGACCCATCCTCTTTCGCTCACTCTGTCAACAGTGAATGACCTTTTCCTGGTGCGATATTATGCACTGattatttgcttctccgtggaccgagccccgggttgtccacgggaacggagggggaatggtacagttttggtagttctttttttccccgcgggggaggggagctgtttagtttgggaaacgaccttgctggaccacggagacatacccacgggatgtggtcgaatttttggtcatcggtatatcgctctagaccaaagatttatcgtgccattttatttGTTTTCGATGCCAAATTTCgatatatgtcgtgggtgttcatacttaccccaagggaagggctaattgtcgttgatttcatgccttttaccaggggctttgaatggttttgtttgtctggaaaaacaattcccctggagtcgacccacggggaagcaaataaGTCCATTATCCTTCGAAATCCGTCAACTAAATTGTTCCCTGTCATGGTTTTTCAATTCTCTTTACCTCTATCCAGGGTATTATTACTTGTATCGTCTGGGGACATCTCCTCGTTTCTAAAAGCAGTTGGCAAGCTAGAATGGACAGCAAGTAGGCCATAATTTCGGCGAGCGATCAGTTAGCGCAAGAAAAATTTTCCGAGGTT

Protein

Uniprot

Uniprot term	Description
Q68FQ0	T-complex protein 1 subunit epsilon OS=Rattus norvegicus OX=10116 GN=Cct5 PE=1 SV=1
P80316	T-complex protein 1 subunit epsilon OS=Mus musculus OX=10090 GN=Cct5 PE=1 SV=1
P48643	T-complex protein 1 subunit epsilon OS=Homo sapiens OX=9606 GN=CCT5 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00118	Cpn60_TCP1	TCP-1/cpn60 chaperonin family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002423	Family	Chaperonin Cpn60/GroEL/TCP-1 family	Interproscan
IPR017998	Family	Chaperone tailless complex polypeptide 1 (TCP-1)	Interproscan
IPR002194	Conserved_site	Chaperonin TCP-1, conserved site	Interproscan
IPR027413	Homologous_superfamily	GroEL-like equatorial domain superfamily	Interproscan
IPR027410	Homologous_superfamily	TCP-1-like chaperonin intermediate domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11353	CHAPERONIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0140662	Molecular Function	ATP-dependent protein folding chaperone	Interproscan
GO:0005832	Cellular Component	chaperonin-containing T-complex	Interproscan
GO:0006457	Biological Process	protein folding	Interproscan
GO:0051082	Molecular Function	unfolded protein binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09497	CCT5; T-complex protein 1 subunit epsilon	-	Exosome	ko04147	deepkoala