Gene detail

Detailed information of amic_s0079.g35.t1 in Acropora microphthalma

Genomic Location: sc0000079_pilon:716948...725354
NR annotation: XP_029192462.2, capsule biosynthesis protein CapA-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0079.g35.t1

GCCGGTGTAGTTGAACTTCACaaaaaaaaaaacaaaagaaaggaaaaaCACGAATTCTTGATCCAAAACTGTGTGCGCCTAACTTTTGCTAGCTTTTGCCTTTTCCTCAAAACATTGGACAATGTTGGTTATTCTTTCCAGATTTTATGTCAGCTTCTTTCTGTTCATCTCCACACATTATGAACTGGGAGATTTTTCTAGACATGACGACAATCGAGTAACTCTCCTCTTTGTGGGCGATATCAGCTTTTCCACGGTTACAAAATATTACGTTGAGCATGGATATCACTCATACAACGACACTTTCAAGGAAGTAGCATCTTACATAAGAGAGGCCGACGTCTCTGTTGGGAACTTGGAGTCACCGTTTGTCGGCGAGAATACCTATCAGTACATGTACAAAGGGCCGAAGATGGTCATATTGGATGCAAATCCAAGTGCTGCAGCAGCATTGAGTTTTGCAGGATTTGATGCAGTTACACTCGCCAATAATCACATAAACGACTTCAGCGCGGAGGGTGTCAAGTTCACCGTGGAGACTATTGAAAAGGCAAAGATTAAACACTTCGGAGACAGTTACGGAGAATGGAATTCTTCTCAGAAACCTCTTATTGTCGAAGTGAAGGGTACAAAGATTGGTTTTCTTGGTTACTGTGATACTCCCAGCGTACACAAAAACTGTACCGGAATGAGGAAGATTTTCAAGTCGGGTGCAGCTGTTTATACCGATGATATTGCTGCTCGAGACGTCCGCAACTTGAAAAAGGCTGATGTCGACCTCATCGTTGTACTAATCCACTTCGGACAGGAACTGCAAATTGAACCACTTCCGTACCAGCGTCGTATTGCAAAACGCTTGATTTCACTTGGTGTTCAAATTATCATTGGAGCTCACCCGCACGTGCTACAGCCACATTGTTTCCATAACAACACACTCGTGGCCTACAGTTTGGGAAACTTCCTGTTTCATCCAAGACGAACAGGTGGAGCTAGTAATCAGAATATTTATGGAAGACTGGGAGGGAAACCGAACAAAGAGAGAATCGAAGCGTATGAAAACTTCGCTCTCGGAAACTGCCAAGACCTGAAGAAGACAATGATGTTAAAAGTCGCTGTATCCAGAAATCGTTTACTGAAGGCAGAATATCTACCCGTGAAAGTCACATTTGATAAAAAAACGAAACTACTTCATCCTAAACCTTCAGAGGGCTCTGAATGGATAAAAGTTTGTGGAAAAAAGGACAACCAGTGTGACAGACAATGTAAGCAGAAAGACGGTTAAACGAGAGCAGAAACAAAGAAATGACTTCTTCTATCACCAGTATACCAGCTAATTGTCTTTGAAATGGATGTGGCACCTGAATGCATGGTGAGGATCGGGACTGCCAAAAATTTTCTTTGTCCCAGACGTTCCTCTTCCTGAAGATGCCATTTGCTATCTAATGAACTCCTAAAAGACCATGATCGTAGTTGTCTAATTTAAGAAGCAGTCTCGCTAAGAGCGGTCCGGTCAATTTCGCGTTAGAAAAAAATTTCCCTTAAGACTCTCTACACTTAAAGGGTTTGGCACATAACTTACAAAAATGGTTTTGTCTCTTATAAATGATTTACTCTTGCTTTCGTATTGGATCGATTGGGTTCGGGCCTATCGGTCTTCCTCTGAGACCCATTTGATGACCGGATTTTGCCCCTTTTGAGGGCTGTGCCGTATCAAAACTAAAACTTAGTCTACCAATAAAATTTCTTCACCCATCAGATGTTTTCATTACTTTTTAATGACAAATAGGCAAAATATCGAAACTTTTGATAATTTTACTGATAAGTCACAAGCCCCGAAAGGCACCCCTCTGAGCAGACCTCGACCTCGTAGGATTTGCATtagtggaccaatgtaaatcctgcattttaattgcctacgctactagaagactattagtaatagtcatcgagtagcgaattcgtgctgcttttttcggtttattcccaaataaatatttcttccactt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P96738	PGA biosynthesis protein CapA OS=Bacillus subtilis (strain 168) OX=224308 GN=capA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000705 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09587 all species →	PGA_cap	Bacterial capsule synthesis protein PGA_cap	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029052 all species →	Homologous_superfamily	Metallo-dependent phosphatase-like	Interproscan
IPR019079 all species →	Domain	Capsule synthesis protein, CapA	Interproscan
IPR052169 all species →	Family	Cell Wall Biosynthesis Accessory Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33393 all species →	POLYGLUTAMINE SYNTHESIS ACCESSORY PROTEIN RV0574C-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for amic_s0079.g35.t1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0079.g35.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.