Gene detail

Detailed information of amic_s0079.g41.t1 in Acropora microphthalma

Genomic Location: sc0000079_pilon:848668...860312
NR annotation: XP_029192375.2, cyclin-T1-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0079.g41.t1

ATGGCGACCAGTGCGGTGAGTACCACGGACCGGTTTTATTTTTCGAAAGAACAACTTGAAAATACGCCGTCCAGAAAGAATGGAGTGGAACCAGAGAAAGAGCAAAGCTACAGACAGCAAGCAGCTACTCTAATTCAAGACATGGGACAACGGCTTTCTGTAAATCAGCTGACGATTAATACAGCGATTGTTTACATGCACCGGTTCTACATGTTCCACTCATTCAATAAATTCCATCGAAATGCATTGGCCCCATGCTGCCTTTTCCTTGCAGCTAAGACTGAAGAACAACCACGAAAACTAGAACACGTTCTTAAGGTGGCTCATGCCTGTCTGCATCGCGATGGCCCTCAACTTGATCCAAAAAGTGAGGAATACCTGCAACAGGCTCAAGACTTGATTGAAAATGAGAGCATCCTTTTGCAAACCTTAGGATTTGAGATTACCGTTCATCATCCTCACACTTATGTTGTCAAATGCATCCAGCTGGTACGAGCAAGCAAGGACCTTGGCCAGACCTCGTACTTCATGGCTACTAACAGCCTTCACTTAACCACACTATGTCTTCAGTACAAACCGCCAGTCGTAGCTTGTGCATGCATCCATCTTGCATCAAAGTGGTCCAACTGGGAGATTCCTCAGTCGAATGATGGAAAAGACTGGTGGGAGTACATCGATCCTTCAGTCAACAAGTCGATGTTAGATGATATCGCTCAGGATTTCCTCAAAGTCATGGAGAAGTGTCCCAACAGACTTAAAAGGAAGATCAACACTGTGACAAACCTTAAGGGTGTATCACACAGCAAGATGTCGAAAGGAGAATCCACCAGTAGTCGAGCATCGAGTTCGTCCTCGGCGAGTGCTTCCTCAACCAGCCATGGTCTTGTCGATGGAGCTCAAAATGGATATTCTTTTTACGATGTACCTTTCTCAAATGAGTTGGATGGGAAAGCTTTGCATAGGTCCAAATCTGATAAGGACCGAGAGAGAGAGAAAGAAAAAAGGAGGGAATCGTCTCTTGGTAAACTCAAACCTCTGCCAGTTGCTACCTCAACAGTAACGGCATCGTCAACGACAGGGGCGAGTTCGTCGAATTCGAACACAGTGTTACCACCTTTGCCTCCGCTGCCTCCACTTACATCGAAATACGCATCTCTTCCTTCGGCTAATCCTGTTCAGTCAAATGATGTTAAAGTTTCGTCTGCAGCATCGAGTTCGGCGAAGGATTCATCGTCTTCAAGAGGCAAACACCGACATCATCCTCACGATGAATCGCAGCCTGCTAAGAAACACAAATCTTCACACTCTCACGCACAAAGATCGCATTCATCTTCGTCTTCGTCGTCGCATCGCAAGCCGAGTGGTTCGTCGCAGTCTTCGGATTCCTCACCATCTCCCAGCCTCAAACACGGTCATTCATCGGCTCACAAGAGTTCAAGCCACTCTGTGAAACTCTCAAATCCTTCTCACCATCACTCTCAAACTGGTCTGTCGTCGCAACCTGCGCATGGATCTTCTCATTCCTCGAAAAAACCACACCCAACACCGCATCCGCCAAGTCACAAgtcttcgtcttcgtcgtcgtcgtcgtcctcgCAGCATCATGGACACCACGGGCATTCTTCGTCTCATCGGCCACCTACGGCGTCCTTGGAATCCTCGAAGAAACACTCGAGCGCCGTGCGATCGGGGGCACCGGTTTCATCGCAGCCAGCTCCTACCGCGAGACAACTGAcccctccaccaccccctcccccgcctccgtccacgATGGACTTGGGCTTGCTTTCGTCGTTGAATACGCCGGGAATGTTAGGCGTCTTTCCCAGCGCGGAGATGCAGGCAATGCAACCGCCGATAACTATGCAATTTGGGGGTCATTTTATGCCTCCCATGTTTTCGTCCAATTCGAGGTCATCTATGCTGCAAGGCGAGGcacctccaccaccaccccctgaaccagaaccagcggcacctccaccaccaccccctccGATGCCATAG

Transcript

amic_s0079.g41.t1

CACAAAATTTTTATTCCAAACAAGGCCGCAGATTGTTGGTGTGTCGTAAGAGAGCAAAACATTTCTGAATTCTTCTGGACGCTTGCCTCCCGCAATCAGCCACAAACACCATTCTTGTCTTTCAACGTCGAAAGATCGCTGAAGGCTAAGCACGCCATCTAAAAACCCACTGATTTCTTGTTTTCCCTTCTCCGTGTGACAATTAGCTTTGAAATTTGCGGCTGTACTTTGCTTTGCTCTTACTGAACTACTGCCATCCGCCATATTATTATGCGATGGTCATTGCTCATGCGTCAATTGCGGCCAATACAGCTACACATGCTCATTGCGTTCCTGTTGATCCAATATGGCGACCAGTGCGGTGAGTACCACGGACCGGTTTTATTTTTCGAAAGAACAACTTGAAAATACGCCGTCCAGAAAGAATGGAGTGGAACCAGAGAAAGAGCAAAGCTACAGACAGCAAGCAGCTACTCTAATTCAAGACATGGGACAACGGCTTTCTGTAAATCAGCTGACGATTAATACAGCGATTGTTTACATGCACCGGTTCTACATGTTCCACTCATTCAATAAATTCCATCGAAATGCATTGGCCCCATGCTGCCTTTTCCTTGCAGCTAAGACTGAAGAACAACCACGAAAACTAGAACACGTTCTTAAGGTGGCTCATGCCTGTCTGCATCGCGATGGCCCTCAACTTGATCCAAAAAGTGAGGAATACCTGCAACAGGCTCAAGACTTGATTGAAAATGAGAGCATCCTTTTGCAAACCTTAGGATTTGAGATTACCGTTCATCATCCTCACACTTATGTTGTCAAATGCATCCAGCTGGTACGAGCAAGCAAGGACCTTGGCCAGACCTCGTACTTCATGGCTACTAACAGCCTTCACTTAACCACACTATGTCTTCAGTACAAACCGCCAGTCGTAGCTTGTGCATGCATCCATCTTGCATCAAAGTGGTCCAACTGGGAGATTCCTCAGTCGAATGATGGAAAAGACTGGTGGGAGTACATCGATCCTTCAGTCAACAAGTCGATGTTAGATGATATCGCTCAGGATTTCCTCAAAGTCATGGAGAAGTGTCCCAACAGACTTAAAAGGAAGATCAACACTGTGACAAACCTTAAGGGTGTATCACACAGCAAGATGTCGAAAGGAGAATCCACCAGTAGTCGAGCATCGAGTTCGTCCTCGGCGAGTGCTTCCTCAACCAGCCATGGTCTTGTCGATGGAGCTCAAAATGGATATTCTTTTTACGATGTACCTTTCTCAAATGAGTTGGATGGGAAAGCTTTGCATAGGTCCAAATCTGATAAGGACCGAGAGAGAGAGAAAGAAAAAAGGAGGGAATCGTCTCTTGGTAAACTCAAACCTCTGCCAGTTGCTACCTCAACAGTAACGGCATCGTCAACGACAGGGGCGAGTTCGTCGAATTCGAACACAGTGTTACCACCTTTGCCTCCGCTGCCTCCACTTACATCGAAATACGCATCTCTTCCTTCGGCTAATCCTGTTCAGTCAAATGATGTTAAAGTTTCGTCTGCAGCATCGAGTTCGGCGAAGGATTCATCGTCTTCAAGAGGCAAACACCGACATCATCCTCACGATGAATCGCAGCCTGCTAAGAAACACAAATCTTCACACTCTCACGCACAAAGATCGCATTCATCTTCGTCTTCGTCGTCGCATCGCAAGCCGAGTGGTTCGTCGCAGTCTTCGGATTCCTCACCATCTCCCAGCCTCAAACACGGTCATTCATCGGCTCACAAGAGTTCAAGCCACTCTGTGAAACTCTCAAATCCTTCTCACCATCACTCTCAAACTGGTCTGTCGTCGCAACCTGCGCATGGATCTTCTCATTCCTCGAAAAAACCACACCCAACACCGCATCCGCCAAGTCACAAgtcttcgtcttcgtcgtcgtcgtcgtcctcgCAGCATCATGGACACCACGGGCATTCTTCGTCTCATCGGCCACCTACGGCGTCCTTGGAATCCTCGAAGAAACACTCGAGCGCCGTGCGATCGGGGGCACCGGTTTCATCGCAGCCAGCTCCTACCGCGAGACAACTGAcccctccaccaccccctcccccgcctccgtccacgATGGACTTGGGCTTGCTTTCGTCGTTGAATACGCCGGGAATGTTAGGCGTCTTTCCCAGCGCGGAGATGCAGGCAATGCAACCGCCGATAACTATGCAATTTGGGGGTCATTTTATGCCTCCCATGTTTTCGTCCAATTCGAGGTCATCTATGCTGCAAGGCGAGGcacctccaccaccaccccctgaaccagaaccagcggcacctccaccaccaccccctccGATGCCATAGCAACGAAGACTCGCGTCATCAGTTATGTCGTTTGTTTTCTAGGCGGACGCGGATGTAAAAATGCGAACCGCGGCTGGGGAATTCGTAGGAAAAGAGGCAGACGCTGCAACAAATCAAAGTTGCCAAGGAAGAGAAAATTCTTGTCTCAGGGAAAAAATGATGCTAATTTGTAATCTATGTATTTAAGTTCCAATCATATGAGACTGTTGAAGAAAAGACTCGGTAACAATGATAGGTTTCTCTTTTTTTTTTTCATTTATGAATTGAGGATAGTGTTTTGATGTTTCGGTTAGTTGTCCTTCTCTTGTGCTTTCGTGTGTATTCGGCGGTGAGAATAAGACGATAACCCAGAATTTTTCTGCACTTCAGACTTCGACAAAAAAGCCTCGCTCTTTTTCAAAAATGCCCACATACTTGTTCTACAAGTCAGAATTTGGCTTTATTGAAGTGCACCGCCTTTCAATTTTAATTGCACATATTGTGAAAATAACTGAACCGAAAAGCGTACCCGTTTTGAAGTCTAAATAGATGTGTCCTAAAAGGACTTTTTTTTCCCAAAAATTCGATTGAAATGTATTCTGGACTCATACTGAGATCGTCCCTGAAAGCGTTTATTTTACAAAAGCATTATTGGACAGTGTTTAAAAAAAGAGTTGTTACGATTTCCAGCGATTTGTAACTAACGCCGTTCTTGAGAAGTGCTAGTGTCTTTAATCACGCGGGCTTCCGAAGCGGCTGTCATTACGTAATAAATGCAAAGTGGGACGAAGATGATCGGTTTAGCGATGACGCTTTGTTGTGAAAACGAGGGGCCTTCTTCGGACATCGCAATAATACATGGTGAGTTTCTGCATCTTTTGTACAAATGTTACCTCATATTGGGGAAAACGCTCTTGGTGATACATGATTACAAGTCACGAAAATTGTGAAATCAGTTGTCGAAATCTGTTCGTGAAACTTCTTGGTAAAAGCTGGTCTTAGGATATGTTTTCGTTTTAAGAAATAATACAGCTTTCGATGGAAAGGTGACTTATTTACAAAAGCGCACGTCAGCGTGAATattagggag

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9XT26	Cyclin-T1 OS=Equus caballus OX=9796 GN=CCNT1 PE=1 SV=1
Q7TQK0	Cyclin-T2 OS=Mus musculus OX=10090 GN=Ccnt2 PE=1 SV=1
Q6T8E9	Cyclin-T1 OS=Bos taurus OX=9913 GN=CCNT1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001758 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00134 all species →	Cyclin_N	Cyclin, N-terminal domain	Domain	Interproscan
PF21797 all species →	CycT2-like_C	Cyclin-T2-like, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013763 all species →	Domain	Cyclin-like domain	Interproscan
IPR006671 all species →	Domain	Cyclin, N-terminal	Interproscan
IPR043198 all species →	Family	Cyclin/Cyclin-like subunit Ssn8	Interproscan
IPR036915 all species →	Homologous_superfamily	Cyclin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10026 all species →	CYCLIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008024 all species →	Cellular Component	cyclin/CDK positive transcription elongation factor complex	Interproscan
GO:0016538 all species →	Molecular Function	cyclin-dependent protein serine/threonine kinase regulator activity	Interproscan
GO:0032786 all species →	Biological Process	positive regulation of DNA-templated transcription, elongation	Interproscan
GO:0061575 all species →	Molecular Function	cyclin-dependent protein serine/threonine kinase activator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15188	CCNT; cyclin T	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.