Gene detail

Detailed information of amic_s0080.g2.t1 in Acropora microphthalma

Genomic Location: sc0000080_pilon:16256...34315
NR annotation: XP_044173318.1, G-protein-signaling modulator 1-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0080.g2.t1

ATGGAAAACAAAAGTGTGAAGTCCAAGAACTCGAGCCGGTGGTCTGTTGTTGGAGTGATTGGACTCAACGACAAGTCGGAACCTTGTCCATACTTTGTTTATGCCAATATGTTTGATAGTAAGCCAGTCCAAAGTGAAGGGGAATGTTCAGTTTTTGGCAATGAATTAAATGCGACTGCAACAAAACAGGTGACTAGTGCTGGTAGATCAGAAGAAAGGGCTGCCATCTCTCAATTGCCAAGTACAAGTGATAGCAAAGATGGAAGTTTCTATTACGATCTTGGGATGGATTACATCTCCCGCTTTGACGTTCCAAAAGCTATCGACTGTTTTGAAAAGAGTTTGGACATTGCCGAGAATGCAGGCGATCAGGCTACAGAAGGAAAGGCTGCTTTAACTCTTGGGATCTTTTACCAATCCGAGAGCAATTTTCCAAAAGCAATCGAGAATTACGAAAAGAGtttaaacattgccaggaaaacaggcgaccgggctagagaaatagatggctattccagtcttgcaagcgtttacgagtcccgcggcgaatttccaaaagccatcgagtgttacggaaatagtttggacatttccaagaaagcaggcgatcgggaaagagaaggaaaggcctattacagtcttgggatcgtttacgactccctcggtgattctcgaaaagctagcgagtgttacgaaaaGAGTGTCAGTATTACCGGGGATGCGGGGAACGCTCACGACTCCCACAGCGATTTTCCATTAGCTATCGAGCTTTTTAAAGCGAGTTCTAAATTTGCCAGTGAAGCAGGCGACTGGGCTGGGGTAAACCGCGCCAATAAAGATCTCGCGAATTCTTACTTTTCCCGCCGCGATTTTTCAGAAGCTTATACGTATGGGATAGAGTATTTAAAAACTGTCAACCGAGTGGGTGCTCATACTGAGGAGACAGCAGAAAATGAGAGTGAAGAGCACAAATTGACAAAAACTGTTCCACTCAAGGTCATTGAGGCGACAAAAGTGAAAGGCGAGAAATTGACAACAGTAGACATGGAGAAGGGAGGAGCCATTGAAACAGCCGAGATTAAAGAACCACAGAAAAATGTGACAGTTAGTGAAAGGGCGATGAGCAAGGAAGTGATCACCACACAAGAAGCGGAAAAACCAGGTCACTCATCATTGTTAACAGACAGTCAAACAACAGCTGCAACCGAATCAACTAAAGCAACGAAAAATATTGCTGCTAAAATGGAGAAGCTGTCGAAGGAGGAGGTGTCGGTACCTAAGGATGGAGGTGACGGGTTGTCGAGTAAGAAAGAACCCCCCACCCCCAAAGGAAAACAAAATGAAGCCAAGGATATTCCAGAAGCTTTTAATTGTTTTGAAAAGAGTTTGTGCCTTGCCAGGGAAGCAGGCGACCGGGCTGGAGAAACCACTGCCCATTTTTGTCTTGGGATCGTTCACTTTGACTGCAACGATTTTGAAAAAGCTGTCAAGTGTTTTGAAGAGAGTTCAAACATTGCCAGGGAAGCAGGCGACCAGGCTGGAGTAAGACGTGCCAGTCACTATATCGCAGAATCTTACTTGGGTCTTGGCAATTCTATAAAAGATAGTAAGCTAGTCCAGACTACCAGTGGTGATGTGGAAAAGCTAGTTTCTGGCATTCAATTAGATACGAATGGAGGGGGTGGGTCAATGTCAGAAATACCATTAAAAATTGCAGTGCAACCACAAAGCCAAACTAAAAAGGAGGGATCAAGGGTGGAACTTAGGTGTGAAGCAACAGGGAATGAATTGTCTTATAGCTGGCTAAAGGACGGACAAGAGATGGAAGGCCAAAGAGGCTGCTGCCTGGTTTTTGAGCAAGTGAGCGTGGCTGACTTTGGCTCTTATGTATGTCAAGTGGAAAAGAAAGACCAAAGGTGTTCATCAGAAGTTGCTGAGCTTGATGTCACACCTGGTGATGGAAAGAGATTTTTTGCTTCAAGAAAACTGCCTGCTTTGTTTCGTTTCTCTGTTGTTTTATTATGCCATCCAACTGCTTTTCCCTTCATGAGAGTTGGTTTCTGGGTTATTATTCAAAATTCACTTAGggagcattcatag

Transcript

amic_s0080.g2.t1

GTTCTTGGAGCCCCAATCATCATGGAAAACAAAAGTGTGAAGTCCAAGAACTCGAGCCGGTGGTCTGTTGTTGGAGTGATTGGACTCAACGACAAGTCGGAACCTTGTCCATACTTTGTTTATGCCAATATGTTTGATAGTAAGCCAGTCCAAAGTGAAGGGGAATGTTCAGTTTTTGGCAATGAATTAAATGCGACTGCAACAAAACAGGTGACTAGTGCTGGTAGATCAGAAGAAAGGGCTGCCATCTCTCAATTGCCAAGTACAAGTGATAGCAAAGATGGAAGTTTCTATTACGATCTTGGGATGGATTACATCTCCCGCTTTGACGTTCCAAAAGCTATCGACTGTTTTGAAAAGAGTTTGGACATTGCCGAGAATGCAGGCGATCAGGCTACAGAAGGAAAGGCTGCTTTAACTCTTGGGATCTTTTACCAATCCGAGAGCAATTTTCCAAAAGCAATCGAGAATTACGAAAAGAGtttaaacattgccaggaaaacaggcgaccgggctagagaaatagatggctattccagtcttgcaagcgtttacgagtcccgcggcgaatttccaaaagccatcgagtgttacggaaatagtttggacatttccaagaaagcaggcgatcgggaaagagaaggaaaggcctattacagtcttgggatcgtttacgactccctcggtgattctcgaaaagctagcgagtgttacgaaaaGAGTGTCAGTATTACCGGGGATGCGGGGAACGCTCACGACTCCCACAGCGATTTTCCATTAGCTATCGAGCTTTTTAAAGCGAGTTCTAAATTTGCCAGTGAAGCAGGCGACTGGGCTGGGGTAAACCGCGCCAATAAAGATCTCGCGAATTCTTACTTTTCCCGCCGCGATTTTTCAGAAGCTTATACGTATGGGATAGAGTATTTAAAAACTGTCAACCGAGTGGGTGCTCATACTGAGGAGACAGCAGAAAATGAGAGTGAAGAGCACAAATTGACAAAAACTGTTCCACTCAAGGTCATTGAGGCGACAAAAGTGAAAGGCGAGAAATTGACAACAGTAGACATGGAGAAGGGAGGAGCCATTGAAACAGCCGAGATTAAAGAACCACAGAAAAATGTGACAGTTAGTGAAAGGGCGATGAGCAAGGAAGTGATCACCACACAAGAAGCGGAAAAACCAGGTCACTCATCATTGTTAACAGACAGTCAAACAACAGCTGCAACCGAATCAACTAAAGCAACGAAAAATATTGCTGCTAAAATGGAGAAGCTGTCGAAGGAGGAGGTGTCGGTACCTAAGGATGGAGGTGACGGGTTGTCGAGTAAGAAAGAACCCCCCACCCCCAAAGGAAAACAAAATGAAGCCAAGGATATTCCAGAAGCTTTTAATTGTTTTGAAAAGAGTTTGTGCCTTGCCAGGGAAGCAGGCGACCGGGCTGGAGAAACCACTGCCCATTTTTGTCTTGGGATCGTTCACTTTGACTGCAACGATTTTGAAAAAGCTGTCAAGTGTTTTGAAGAGAGTTCAAACATTGCCAGGGAAGCAGGCGACCAGGCTGGAGTAAGACGTGCCAGTCACTATATCGCAGAATCTTACTTGGGTCTTGGCAATTCTATAAAAGATAGTAAGCTAGTCCAGACTACCAGTGGTGATGTGGAAAAGCTAGTTTCTGGCATTCAATTAGATACGAATGGAGGGGGTGGGTCAATGTCAGAAATACCATTAAAAATTGCAGTGCAACCACAAAGCCAAACTAAAAAGGAGGGATCAAGGGTGGAACTTAGGTGTGAAGCAACAGGGAATGAATTGTCTTATAGCTGGCTAAAGGACGGACAAGAGATGGAAGGCCAAAGAGGCTGCTGCCTGGTTTTTGAGCAAGTGAGCGTGGCTGACTTTGGCTCTTATGTATGTCAAGTGGAAAAGAAAGACCAAAGGTGTTCATCAGAAGTTGCTGAGCTTGATGTCACACCTGGTGATGGAAAGAGATTTTTTGCTTCAAGAAAACTGCCTGCTTTGTTTCGTTTCTCTGTTGTTTTATTATGCCATCCAACTGCTTTTCCCTTCATGAGAGTTGGTTTCTGGGTTATTATTCAAAATTCACTTAGggagcattcatagtttacctagaggggggctatgattattttgtggggggtcactctttttccctactataatttgtgggggggactgtgaaaaatttccaatgaaaatgacattgagca

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0012662 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12862 all species →	ANAPC5	Anaphase-promoting complex subunit 5	Repeat	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR051476 all species →	Family	Bacterial Response Regulator Aspartate Phosphatase	Interproscan
IPR026000 all species →	Domain	Anaphase-promoting complex subunit 5 domain	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46630 all species →	TETRATRICOPEPTIDE REPEAT PROTEIN 29	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0080.g2.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.