Gene detail

Detailed information of amic_s0081.g54.t2 in Acropora microphthalma

Genomic Location: sc0000081_pilon:625931...642339
NR annotation: XP_044184562.1, LOW QUALITY PROTEIN: protein cycle-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0081.g54.t2

GAAACAAAATAAATTCCCGGTAGAGCAAGTAACCATGAAATTGTCTCGCCGTTGAAATTCTGCTGGCGAAAATTTGTCGAAAGAGAATGCAACGTAAACTTCGAGAAGGAAGGAAAAATGGCCGTGTATTCTTGTCACCGGCCTTCTCTCGAAACCAACCGAAAATGGACCACAATATTTGAGTTGTGGATGTTGTGGGAAATGGGGCTTGGCTCCGAACAAACCTAAGTGAAGATAGCGATGCAGAAACTGTTGACAGTGAAGCAAGGGATGGAGAGGAGAGTCGGAAAGGGTGGCCCAAGACATGCACAAAGCAACTGAACCACAGTGAGATTGAGAAGAGACGGCGTGACAAGATGAACACATACATAAATGAACTATCTACTATGATCCCAATGTGTAATGCCATGTCACGCAAGCTTGATAAACTCACTGTATTGAGATTAGCTGTTCAACACATGAAAACATTGAAAGGTGCCCTTGATCCATTCACTGAGACTAACTATAAGCCAGCATTCCTGTCAGATGAAGATTTAAAGAACCTTCTCCTGGAAACTGCGGAGGGATTTTTATTTGTGGTTGGTTGCGACCGTGGATGTCTTCTTTATGCATCCGATTCTATTCAGAATTACCTGAACCAAACTCCTTCTGATCTTGTGGGACACAGTTTTCTTGATCTAATCCACCAAAAGGACATCAGCAAAGTCAAAGAACAGTTATCGTCATCTGATACGACACCTCGAGAACGCCTCATAGATGCCAAGACTGGCCTGCCACTCAAAACAGAGAACCAACAAACACCAACAAGACTATGTTCAGGGGCCAGGAGGTCGTTCTTTTGTCGAATGAAGTGTGGATCTAAGGGAAAAAAGATGAAGGAAGGCAGCCAAGATACTGAACTTTGTCTTATGAAGAGAAAAAGCAAAAACAAACAAGCTCTAGACAAAAAGCCTTATGTTGTCGTCCACTGCACTGGATATTTGAAGTCGTGGCCTCCATCTGGATCTTCATTTGATGAAGAAGATGAAGACAACGAATCAAGAAATCTTAGCTGTCTTGTTGCTGTTGGAAGACTGGAGACCATTTATGACGAAACGACAGATTACTCGCAGCCAGGCATTGCCAAAGAATTTATTTCACGGCACACCATCGATGGAAAATTCACCTTCGTTGACCAAAGGACGACCGCCATTACTGGGTTTCTTCCTCAGGAGCTTATAGGTAGCTCTGGGTATGAGTTTTTTCATCAAGAAGACCTGAACGCTCTCGCGGTGTCGCATCGGAGGACTTTGGAGGGGGAAACAGTTACCACAGATGCTTACAGATTCCAATGCAAAGGAGGACACTTTGTGCCCTTAAGAACAAAGTCAACTGTGTTCAGAAATCCCTGGTCGAAGGAACTCGAATTTCTCGTGTGTGTTAACACGGTGATCACGGACCTGGAATCTCTTGGTATTCCAGCCTCTGAACTGCACATGGTCACTGATGGTATGGCTTCAGTGTCACCTGATGGTCTAATGACTACCCGTCCTTATCAATCAGGCGTTCAGCAAGTTTTAGAGGTGTTGAGTAAAAGAGCATCAATGGACACAGGAGCAAAATCCAGCGGTCGAAATCCTCGTTTCAGCAGCTCTGATAGTGACGGGGGCGTCAGCAATGCCGGTGCCAGCAGAATTGGATCCATGGTCGCCGAACAAGTTCAAAACCAGGAGTCACATGACAGGCAAAGTGGTGGCAAGACTTTCATTGGTAACTCAAACGACGAAGGCGCCTACGAAACTAGTGTCACAGCGGTCGCTACCACTGTTAATGTGGACGATATTTCAGCTAACGCGCCCAGTTCCTCGCGGATGATATCAGGGCAAGGTGTTGGATCTTCATCTTGGGATCATCAGCGTCAGGTATCACAGGCGCACTTGTTGGAACAATTAATTGGAATGCAGAACGCTATTGAATCCATGGAAACCCCAATGGAACAAAGCGAAGAGACTATGTCGGTTTTTATGAACATGCTTGAAGCAGATGGCGGACTAGGGGGCGAGTTTGAGGGTCTGCCGTTTAAGTCCGATAGTTGAATCCGCAAAGCGGAAGAAACTTCGCCCATCTAGACTGGGATGTATTTCGGGGATTGTTATGATTTATTCGCAAGTTTAATTGCGCAATAGAGCTAATTAAAATTGCTCGTACGGTGTCCGTTTCGTCCAAAACACAAACTGGTCATCTTTCTCATACTCTGACAACTGGCTTGGCAAGGTAGTGAAGAAAACGGATGTACGCCAGTAACGACCATGTTAGCCAGGGACGGTTTGCGATCAAATTTCATATTCTGTCATCATGGCTCACATCACTTTCTTCCTTATAGCAAACAAAGCAAGTGTCTTAGTTATAAAAAGATGCACTTTTTATACTAAAGAGACAGATCTGTGTGGGCTATGACGGCAGAGCTAAATGTGAAAAATGGGTACAGTCCTTGGATGGTATCACAGACTACTTGGATTTTTGCTACCGAAGAAATGTAGCATTACAAAATAGTTTGTGATGTCATATTTGGGATGAAACCCATGCTTCTATGTTAACCCATGTTAACTATCTTGGTATAAAGATATTCCTCCTCGACAATGACTGAGGGAAATCCCAAAAAATTCCACCTGCTCTTGATAGGGGTCAATTTTTTGGCCCTTCTATTCGTAGCCTGGATCCCCAATAAGTGAGTTTAACGACAGATATTCAAAGAAGAATTTATGGTAGAAAGTGAGAAGATATGTTGGTGCAGCATACAACACAGTTGCTGTTTTATAAGTTAAAAATGCAACACCAGTCAGTGGAATTAACACCAGTTATTGCACTCTAAATTCAGCCATAAAACTTGAAGCTTTTCATATTTAATTTCATGTCTATCCATTTTTAACGTCCTACCCAGCAAAATGTTTTTTGAAGAGGAAGGATTCATACTCCAAAGTAGTTTCATTGAAATAGCAGGTTCGTATTTTCCCATCAACAAAGTAAACGCCCGACAGTTTTGTTGGAAAGGAGCAAAAAGGCTATTGTTCGGTTACTGTCTTAAGTTTCCGTATTTCTGACGTCGGCTAACCTTTGATTAAACAGGCTTTTACAGTCTTAAACTATTAGCTGAGACATGACTGTCCTTCCTCACCCCTCCCCTCACACATACAAAAACACATACTGAATCTTTTCCAAGTTAACCACTTTCTTGTCTATTTCCTGTATTGGTAGTTACACATGAACCGCTTCAGCTGCAGTAGGGAAACGGATTTTAGTGCAAATAAATATTGCAATCGACTCTACGTTGTCTTCTATTGGGATCAGTCGTTTTCAGCTTGTGAGGTTTGTTAGCCCTTTTCGTGTTCGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9I8T7	Basic helix-loop-helix ARNT-like protein 1 OS=Gallus gallus OX=9031 GN=BMAL1 PE=1 SV=1
Q6YGZ5	Basic helix-loop-helix ARNT-like protein 1 OS=Tyto alba OX=56313 GN=BMAL1 PE=2 SV=1
A0MLS5	Basic helix-loop-helix ARNT-like protein 1 OS=Equus caballus OX=9796 GN=BMAL1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001412 (this species only)
Transcription factor family	bHLH · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14598 all species →	PAS_11	PAS domain	Domain	Interproscan
PF00010 all species →	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan
PF00989 all species →	PAS	PAS fold	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001067 all species →	Family	Nuclear translocator	Interproscan
IPR000014 all species →	Domain	PAS domain	Interproscan
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR035965 all species →	Homologous_superfamily	PAS domain superfamily	Interproscan
IPR001610 all species →	Repeat	PAC motif	Interproscan
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR013767 all species →	Domain	PAS fold	Interproscan
IPR050933 all species →	Family	Circadian Clock Transcription Factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23042 all species →	CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0034751 all species →	Cellular Component	aryl hydrocarbon receptor complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02296	ARNTL, BMAL1, CYC; aryl hydrocarbon receptor nuclear translocator-like protein 1	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.