Gene detail

Detailed information of amic_s0082.g6.t1 in Acropora microphthalma

Genomic Location: sc0000082_pilon:104724...135095
NR annotation: XP_044177163.1, BRO1 domain-containing protein BROX-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0082.g6.t1

CCTAGAGACCAACAAATGTTGGTGAGCGCAAGTGACGATCACACCATTCGGGTCTGGAAGTCTCGCCAACTCGCTAAGGTTACTGAGGAAAACTGGCAGGAACAGGAAGAGTTGAGTCTAGAATCACTAGTATGAATCAATAAATTAAGAATGTAGCAGCAGCAAGAGGGGTCGTTGGGAACTTTTTAACATTGACCTCCCCCCTCCCTTCCACTCCTGTGTTATATTCCAAAGAAATTATTTTTATAATTTTTGAATTGGTAGATTTGAACAAGGTACTTAAGTTATGAAGGATTGGGAGTAATTCATGAATGCACACCAAATTTTGGCGAATATCACGTAGTGTCTCATGAAGTTTAAGCACAAAGTATCTGTTTGTAACCTTACGGTTAGCGTTTGTGTCTGGGTTATTTCTTatcataataataataataggaagaaaaagaagaaCCTATTTTTATAGTGCCTATCTAGCGATGAACTAGGTGCTTAACAAGTAAAATGCTTGAATTAAAAGTTTATAAATATTAGTCAAAATAAATTCAAACGAAACACATATAAAATCAAATAAATCTTCCTAATGACTAGAATAATTGTTCTTAAAAAGGTAAGTTTTGAGTTTAGTCCTAAAAAGTCTCAGATTCTCGCATGAGCATGTGCGGTGATCAAAGTATGTAGTTTGTTCCATAGCTCGGCCGCTAAGACAGCAGTAATTATTGCTCTAGATCTTAAATTTAACAACATTCAGACTGAGAATAAAATAGTTTGTGCAGTTAGGTTAGGTTGAAGGTTACTGTTTTTGACCTCTTGATTATTAAGAGGACTCTGAAATATGTTACCTGTTGCCCTCATACTTAGACTTTTTAAAGAACCGCTAAGAAAGTACTTGCAACGGCCATAGTTAGTAGAGGGGAATGGTTATGAAAGCCGGCAAACTTCAAAGGACCGGCCTATTGTTTTGATTCCCCTCTACTAACTATACAACGGCCCAACCATGTCAAGGCATGAATGTGTCATTATATGGCTAAATTCTTAAGGAAAACCTAATAAATGGGATGAGATTTACGCCGTCCAATTTATTTTATTCCGCGAATTTCATTGAGAGAAGATTAGTGCGAACGGATCCTTTCAGAAAGTGTTAGCCAGAGTTCATCCCGATTTTGTTCCATGAAGCAGCCGAGGGTATTGCTGCTCAAGCACGGAAAGGACGTGAGTACGTTGCAGGGTTACTCACAGCAGTATGTATATCGCCTGTTTGCACTGACACACCTGGCTACAAAGAGACAACAGAGAGATCCGAGACCTTTAATTTCCAGCCACGGTCTGTGGcaatactcctcaacatgataacacaacaagctactggtcGAGACTTGCTCCATAAGAAACTCTTTCATATTGTCCGACAAATACAGTGGAACGTCATGCTGCAAATTTCTGGGTATCGGGTTCCGTATCACTCGACGCACGTTTTGTGCCCGTTATGCACCCCGACGCAAGGGAGATCGCTTTCAATCCCTTTACAACCATGTTGCTTTTATCCCTCGGGGATACATCGAGAAGTACCCGTTCCGCCTCCAGGAAGTCACAGTTCTTTGACCGCGTTTCGACAAAGTTCTTTTCAACCGTATCGCGTTGCACTTAGGTTACCCACTCCGGGCCCATTTTCACGCCGACAGGCGCCTTCAAATGAGAATCACAGCACGGCACAGGCACAACCTGATGGAAGTAGCAGTGTTGATGTCAGTTCCAGCAAAAACAGTACCGAAGAGGTATCGACGCCGCATCGCTGCACTGCTACGTCAGCAAATACAAAGCGAAAGCGGCGCAAGCGAACCATTTTCACAAGTGAACAGCTCAGTCGTCTAGAATCTGAGTTTGACGAACAACAGTATATGGTAGGAACCGAGAGGCAGCAACTGGCACAGGCGCTGAATCTGTCGGAGACACAGATAAAGATATGAAAAAAGTTGACTGAAGGCCTCAATTTTGGAAAAGCACTCGATGGAATACCCAAAGACGTGGAGAAATTTGTACACGACGCCACTAGAAAGAGAGATGGCATTGTGGAGGCTTTGAAAAGCGTTGATGGATCAAGCGAAACCATGATAAATACACTGAAAGAATATGTTGCCATGACTACAACTTTGAAGAGTATTCTAGAAAAGGTTAAAAGATATTCAAGGCTAAGGTTTAAATGGTCTAACTTGCTGGATGATGAGAAAACTGTTACAAATGATGTTGACAGAGAGATGGTCTCAATGATGTTTGCAGCCGCATTGTGGCACATGGAGCATGCTCAGTGGCTGACGAAAAGTGTTCGCAATGAAGAGGAGAATGAAGAACTAATGAAACGAAAACTAAATTCTTTGAAGGCTGCAGCCAGTATTTTTGAAGCAGCCAAATCATGGCCAAATTCACTTCGAGGAAGCATAGATCTCAAGGCCCAAATACTGGATGCCCTCAGTCTTCAATCAGTCGCAGAAGGACAGACTATAACAATAAGACGGGCAATTAGCAAAAACCACAAGGCATCTTTGATCAGTGAGCTATGCTGTGATGTTTCATACAAGTACAACATGGCTGCTGGAGAGGTCAATGGATCAAGTCAGGAGGGACAGAAATGGGCTTCATACATGAAATTTCAAGGAGAAACATACATGGCCTTAGCAAGAGCATACCAAGGTGTTCATCTCCTTGAAACTGAAGAAAGGTGCGGTGAGTCCATAGTTGTTCTGAGTCAAGGTCTTCGTCATATTGATCAGGCCGTTAATCTGGCAAAAGAATACGATAAAATTAAACCCAAAACGAAACTTAATCTGGACGAAACACCGCAATTTCAAAAGGTAAAGAAACTTTTAGAAGAGAAAAAAGCCAAAAGCGAACGTGAAAATGGGCTTATTTATCATGCTAAAATACCTGAGGAATGTCCCCCACCTCTGGAACCCAAATGTGTTGTCCAGATTACAGCTCTTGCGCTGCCAACTGGGGGAGATCTCACAAGTGTCGTCACAGAGGCTGCAGACGCAAATCAACCCGAGGGGAAGAAGGAGGATGAGGACACCAGTGCAAGTTCAAGCTGATTGGGCGACGCACACTAATGAAGTTTATTTTTGCGTGTGACGAAGGAACCTCTGTTACTAATTTTTTTGGTGACATTTTTTGCCTCGTTCTCAGGGTCCTCACTCTCGAGCCTTGGAACGAGGTAGGAATATCGTCGGGCCTTCGCCAACGAGTGGTTACTATGGGTGTTTGAATTGCGCATTGAAATTCAGGCATTTCATGTATTAGTAAAATCATCTATTATATAGAGATCTATACCCATCATCCACGGGCTTGTCAACGACCAATATAACGtccaggggcccgtttctcgaaagtcccgaaacttttcgggcgcatttcgggtgacaattctctttgcatcttaaaaatgaaggcgtcccgaggcacgaaactttgaagttattttaatatttattccctttacaacatatgaaaagaccagccttacagaatacgcgggccggagttttatgaatgtcttttcaagtttttactttcgTAGAGGATTTTTGAAATAGTATTCTATTCTACAACACTCCATTTCATGCTCAATTAACATAAGACATGGGGAAAATTATTGATCCAGCGGGCTAGGTGAAGAGCTGTAACATAACTATAAGGGCGACCGAACCGCACGACTTGTCAGGACCGGGTGGGTGAGTGGGACGTCCTTTACTCTGGTTGTCCGCTGGAAGGAAACTGAGCAAGAAACGAGTGTTTTTCCTAGTTACGTAATCAGCGTGCAAATGCAGGCCAGGTGCTAATTAAGCATTATAATAACTTATCTTATTATCGCATTTCATTAGGAGTATTGTGAATAGCTGTGTGGCTTTTATCATAAAGATACTTCTACCTCAAAGAGCAATAAAAGAAATGATTAATA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q22885	BRO1 domain-containing protein BROX homolog OS=Caenorhabditis elegans OX=6239 GN=B0507.2 PE=3 SV=2
Q91770	Homeobox protein not2 OS=Xenopus laevis OX=8355 GN=not2 PE=2 SV=1
Q06615	Homeobox protein notochord OS=Xenopus laevis OX=8355 GN=noto PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009387 (this species only)
Transcription factor family	Homeobox · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03097 all species →	BRO1	BRO1-like domain	Repeat	Interproscan
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004328 all species →	Domain	BRO1 domain	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR038499 all species →	Homologous_superfamily	BRO1 domain superfamily	Interproscan
IPR038898 all species →	Family	BRO1 domain-containing protein BROX	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23032 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24934	TTC23; tetratricopeptide repeat protein 23	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.