Gene detail

Detailed information of amic_s0082.g85.t1 in Acropora microphthalma

Genomic Location: sc0000082_pilon:1318051...1328429
NR annotation: XP_029182286.2, McKusick-Kaufman/Bardet-Biedl syndromes putative chaperonin-like isoform X2 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0082.g85.t1

ACATTTTCTGTGCCAAACACAGATTCAAAAGAATAATTTGAATGGCAGAAAAAGCTCATGTCTCGAGGCTTTCCAGGAGGAGCGAGTGGAATTCTCAGATAACAGCACAGCCTTTGGATGATCTGAAAGTGAAAAGTATCCTCAAAACTCTCAAGGATTTAGTTTATTCGGCTCGTGGACCTAACGGAAGGCTAAAATTCTTTCAGTCATCTTCTGGGGGCCATGTCACTGTGACTTCGACATCAAGTAAGATCCTTCACAGCCTTTCTGGTTTATCGCATCCCATACTTAGACTTATCCTGGCAGCTGTACAGGGGCACCTGGATAATTACAGTGATGGTGGCTTACAAACAGCACTTCTTCTTGTGAGTCTAGTGCAGAGCTCACTGGATTTACCGATTCCCAGAGCATTGCTTACTCAACTCTACCATCATTCGCTGGAGATTTTGAGAAACCATCTTGAATCATGCCAATGGAAAATAAAACTTGATATTGGAAATGTGAAAAGCATGATGACTCTCATAAACAGTATCATTGGGACCAAGCCTGCTTGCAGACTCAGTGAATCAGAAAGACGCCATATTGGAGTGCTTATTCTACAGGCTTTCGTTAAATCGATCCCAAGCGGTGCAGCACCCCAAGGTTCACCGGAAACAGTTTTAACACCGGAAAGAATTCTAATTTTGACTTGTGAAGGAGATTCTGTTGAAGAGTCAAGAATATTAGAGGGAGTTGTTCTACGAGCGCCTGATATTGCAACTTTCCAACAGCAAGGAAAGACACTCGTAGGGAACTCTCCCAAAGTAGCTTTGTACAATATTTCGATGGCTGGGGATACAGAGGAATGGTTTGCTGGTGATGTCAGAACAGAAACGACAGGCACTGGGGACAAATTCAGCCTAACAAATGCTGTATTGCGGCAAATCATAAAGCTTTCTGATTGGCTGGTTGCTGCTGGAGTAAGAGTCATCGCTTGTCAGAAGTGTGTACACCCGTTTATTAAGACGTACTTGAGAGACAAGGGTGCGTTTGTGGTTGATCGTCTATCAATTCTTCACATTTCTGCCGTTCAGCGGTTGACTGGAGCTACCATTCTTAGCACCTTTAGTATGGAAATCTCTGAAGAAAGCTTTGGGCAGCTGGAGAGGATTGACCATGTGGTCCTAAATGACAAGAGCTACATTCATCTCTACCCAAAGTCTTCATCGTCACAGATCAACACTCTCGTGCTGTGTTCACCTGACGAGACCTCACTGGAGGAGCTAAAGACAGTTTGTCAAGCCGCTGTTTGTGCTTTGTATGAGACATTAGCCTGTCCTTTTGTGGTCCCAGGAGCTGGGTGTCTGGACACACACTTGGCATCGCTTTTACGACAGTATGCACAGAGAAGTGGCTCAAGGGTTGCTGAAGCATTCGCCTGCACGAAAGGTCAATTTGTTGCCGCCATCAATAACATGGCGCGTTGTCTCGAATCTTTGGCTAGAAGTCTGGAGCATGATGGAGGAGGTCATGTGACTGACTTAACCAATCATCACCATTGGAGTATTTCACCTGGAGCTCTGACGCTAACACCCAACAATCCCCGGTGCCTTTGCGGACTTGTGTCACGTGACGGGTCCATGGAGTGGAATCTTATGGAAGAAACGGTTACTGTCAGCCACAGTAACAGCTGCCCTTGTACTGATGACATTGTTCAGAAAGTGAGTGACAACACAGTACTGGATATCTTTTCCATGAAAATGAACTCCTTTACGACTGCTATTGAGACTGCTAATGCCATTTTGAGGGTCCATTGTATAGTTTGCTCATCAATTAGAGATGGTTGAGTAAATAATATTTTTGGCTTGCACTCGCTTTCTGTCAGaaaaaaatgaataaataatatagcttgataaagaacaaaataaTTCAGAGTTAGAAAGAGACGACCCCTGTTCTCGCTTTTTATATTTTTCGCCAAGCCGCTATTATTTATCAAACCCGAAGAACTTTTCTCCGGTTTTTTTTCATCCCACCACCGAATATGGTTTCTTTTTTTTGGAAGAGCAACCCTTTAGCCCATTTCTTTCGGGTTATATACTAGAGTACGAGGCTTTTGagggaacaaaagaacgcaacgcttttgagccacgaacgggaaccagaagtgacgtttttcctatctcacatttcttcataaccccatatattttttaagaatattttcctagtagagatgattaggttgaaaatctgagggaaaccactctcctgacatgcgaaatgttaactttcggtttccgtccgtggctcaactgaaaaaaacttcacttgcttgctctccaTTACAGAGGAACCTCGATTTACGAAGTCGCTGGGGACCAGCCAAATTTGTTCGCTAAACCGAGGCTTTGTTATATCGAAAACCTCGATAGAACGAACTTGAGGGGATACGACTGAAATGTTCGTTATATCAAGGTCATAGTTAATAGAgagcttaagcttgcaacgtttttgagccacggacggcaaccggaagtgaggtgttttcctgttaatcttgtcttcacaccaccacattcatatttgtaagtctcatttcactagtattgaaaagctgggagagaccactaacctggcgggcgaaatgttcaattctgggtggttgccccggccccgtcgctcaaaaacgctgcgtgcttaaagctccctaATGATTGATTTGTAACACAGGTTACTTCCGTCACGCAATTCAACGCAGTAGTGCCGCGTTTTAAGATTCAATCCATGAAGCATCCTGGCTTTCAGTAGCAATTATTTTCATTTTTGAGTAGACGCACAACTTTGGTGTACAAAAGAACGACACTTTCAGAGTAGTTATTTAAAAATGCTGCTACATGGGGGTTATACAGAAGATAGAGCAGAAGTTAATTGATTTCGAAATACTTAAGTGCCGATGTCTACAAGTCTCTGACTGAAAGGTTGCTGTCTCTTTACCTTAAGGATTTAAAGAACTGTTGATCTGTTCAGGGTTTATCTTTTGTCGCGTGTTGATATCGTAAttcgttttattgagCTGCTGTCAGTTTGCTGTGTAAATGGACAGTCGTGTAGATGATGAAATATTTGTTCGTTTTTTACTGAGTAGTGGTTGCTTGGCACCATTGAAAAGGTGAATGGAAAGAAAGAGATTTCCCCATTGCGTTCAGTTTAGCTTGTTACTTGGGGGTATGCCAATAAGGAAACGATGGCGCAACTTTCAGGCAAACTCAGTCGAGGACAGTTCGGATCCCACTCGCCCGCAAAAGTTCTTGAAGTTGGCCGTGGTGATTGGAATTATGATAGGCATTGCTCTTGCTGCTTTGTACTACAAGAACTTTTTGATACTTTTGATAATAATAGTTATCTGGATATCCTAAACAGTGTCGATGAAAACTCTGAACGCGATTCACGTTTGGACGAAATATGGCGATGTTTGGATTCTACATGTGGAGGGATTTTCGAATCGTTTCTCTCCTGTTTCGCTGTACAAGTTTCTATCACACTATTTCATATAACATATTCCTGGATGCAGCAACTATTCTTGGTGTTAAATGACTTATTTTTGAGCGAAACGTCTGACCAACAGTGGATCAAAAGGACGGATTTTGTTGTGGTCGAAGTTGAAGTCGTGTGATCAGAAATCAAAAGCTACTGTCTATAGACGGTCAATTTGTATGGGGTCAAAATTAACAAGATCTCATTGGATTGAAGAAAATTACTGAATGGTTAACAGAGAAGCATCCTTCAATAATTATATTATTTGATGAGTCACTGCTTTTCCTCAAAGAAAAATTTGGGGTTACCGGCCACGTAGCTCAATGTATGAAGTGTTATGGAAAGATTTGTGTATAAAGAAGCCGAGGTGTTTACGTTTAAGAATTAATATATGGAAAAGGAAATCGAGTTCTGGGTTACGTTTTCTCGTTGCGAACAACGAAAACAAAACAATATTGACGGAATACGTGTGACAATTCCGCAACGCAAGCTTTTGATCTCGGGATATTTTTGTGGTCGCTAAATCAGTTAGTAAATACGGAACTCTATTAATATTTATTGAGTTAAGAGCACATTTTATGCTCAAAAAATCGAATTTTAATTCGTTGTGAAACCAATTTGATTCGAACAATGATTATGTTTCATTCGATGATTGAAATGAGAGCATTGGCGGAGATCGTATGACGATCTCGTGTTTCTGATCAGATTTCACCGTTCCTTTCTTTTCTCCAATTTGAACTCGTTTCCTGTCGTATCGATTATCTATTATTTTATTCATCAGAAAGTTACAATTTGTCTTGTGTGCGTTTCAATCGTGTTTGGGTATGCGTTAAATGCAATCTCATGAAGCAAATCTGTGTTCTTACGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JI70	Molecular chaperone MKKS OS=Mus musculus OX=10090 GN=Mkks PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006867 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00118 all species →	Cpn60_TCP1	TCP-1/cpn60 chaperonin family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027410 all species →	Homologous_superfamily	TCP-1-like chaperonin intermediate domain superfamily	Interproscan
IPR002423 all species →	Family	Chaperonin Cpn60/GroEL/TCP-1 family	Interproscan
IPR027413 all species →	Homologous_superfamily	GroEL-like equatorial domain superfamily	Interproscan
IPR027409 all species →	Homologous_superfamily	GroEL-like apical domain superfamily	Interproscan
IPR028790 all species →	Family	Molecular chaperone MKKS	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46787 all species →	SYNDROMES PUTATIVE CHAPERONIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0032502 all species →	Biological Process	developmental process	Interproscan
GO:0046907 all species →	Biological Process	intracellular transport	Interproscan
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan
GO:0051131 all species →	Biological Process	chaperone-mediated protein complex assembly	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan
GO:1902636 all species →	Cellular Component	kinociliary basal body	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09492	MKKS; McKusick-Kaufman syndrome protein	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.