Gene detail

Detailed information of amic_s0083.g67.t1 in Acropora microphthalma

Genomic Location: sc0000083_pilon:786665...788894
NR annotation: XP_044172601.1, E3 ubiquitin-protein ligase TRIM71-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0083.g67.t1

cgaccagcaggcaaaattcgcaagagaacagctacaaacgtcaatcagatgttccatttgtcggacttcaatcgagattccagaaacagacaccttcgaaaacttgcccacatcatttcacctcaagcgacttgtggatattcttgctctaacggatcctgcggacagcgatcgcgagcaggctcgggtatgcaacagctgtgaggagaacaatccgccaatatgttactgcttcgtgtgccagaatttcctgtgttcatcttgtttagaatctcaccgacgcttgagggctacaagaggccatcgtaatgtttttctcaataatcttcaagcacaagatgtgtaagatctgatggaaagacctgttatgtgttcacaaagtcatcatggagatcatcccttggaattttactgcaaagactgtaaacttcttatttgcaacaagtgcagtgttgtgagacataatcgacacagcataacagacattcacattgctgctcaagaacaaaagatgcaaattgcagatgctgtggacaaagtgaacgcggaaataaccatgtacgagaacgaaataaagaagcaaaacgaattaagaaacaaaatcgaaacagaagtgaagaacgtagaagagaagataacacggactgtgaaaaaaatgattgacgatttacaagaacatgagcggatcatgaaggacaagattcgcaaaattaatgaagcacagcaaaaacaacatgaagaaagacttgacattttagaatggaacaccgtccaactgaaaagctgtgttgaacgatgccaaagtattattaaaagaaacagcagcaatgaaattcttcaatcaaataacaccattcttgatcgctgtaatgaactgttaaaagttcaaaaaccaggcatttacaggtcgccgcatttgcattactttatcgtaaagaatgttgacatcgtggataaagttctagtcaccaacactgatccctcgatgtgttcagctggaggtcaaggaagcaaagaaataatagagaagaacgaaacgacctttgtagttgtgaccaggaattcagagggattgccatgttatcaacaagatgatcaagtcgaagttggcatttttacaccagacaatggtgaactaagaccgaatattcaagataccaaagatgggcgatatagtgtaacatacacgccacaatgtgcgggacgacatcgagtgcagattcaagtgaatggtcagccgctggctggtagtccttggtttgtgccggtcaatcggcaaaggtacctgtatgaattttcgtttgtgtttggatcacaagggaacggacccggagagtttaaccagccattcgatacagccgtgagtcggaaaacgggagctattgctgtcccagacatgcaaaacaaaaaaattcaactgttcttctccgatggaaagttcttaagggaggtaagagtcgtcagtgagcctttctccgtggcatttacagatattggtcacttgttgattttagttcctgggagcgataataagcttcatctgatgagtgaggaaggccagttgattcgttacataaatgataaacatcttgagcaacccgaacatctttctgtggcgagtgatgggcgtataatcgtgtgtgacttggcaggcgacaaaatcaaggtgctctcccctgacgggaatgacttgcttcagtccttcattgcaccaggctgcgattcgtacccatacggagccatttgtcatcaggagaaatattttgtttcgtaccctgattctcattgtgtcaaggtatttgacaaaacagggaagcatttatttgacataggctctaagggatccaaagatggactgttttgttggcctcgaggactcatcatcgacaagtacaatcaactgattgtaagtgatgcgaataaccaaaggctgcaattctttactttggatggcaaatttttacacaaattacaaggagactttttctccaacggctgtcccttgtatgtaaccataagtaacgatgacagtctttttgttgctgactttcAGAAACATTGCATATTTGCTTTTAAGTAGAGAATTAATCCCCTTGTTTACCTTTTTCGATATTAAACGCTTGGATAGTTTTCTGTGATCACTCTTGGATGACAGAAAGAAAGATATGAACATTAGAAGCACCTCGGTCAGACCTAACATGGACCATCAAAGTAAAAAAGAAATTAAAAT

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000293 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00630 all species →	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF00643 all species →	zf-B_box	B-box zinc finger	Domain	Interproscan
PF17170 all species →	DUF5128	6-bladed beta-propeller	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR050952 all species →	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan
IPR017868 all species →	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR000315 all species →	Domain	B-box-type zinc finger	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR001258 all species →	Repeat	NHL repeat	Interproscan
IPR001298 all species →	Repeat	Filamin/ABP280 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24104 all species →	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0083.g67.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.