Gene detail

Detailed information of amic_s0084.g17.t1 in Acropora microphthalma

Genomic Location: sc0000084_pilon:238446...259862
NR annotation: XP_015760168.1, PREDICTED: uncharacterized protein LOC107339400 [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0084.g17.t1

ATGGATTCAAGACCCGTTTCATATGATATGGTTATTTATGAACTCCTCAAACATATTGTCCAAACTGTTGGAGGAAAGATTAGGTTGGACAGTTTGGAAGAACAATTTCAAGGGCGAACTGGTTTTGCGTTATCATCATTGAAGAGTATTACAAGCACAAGTAGTAACCAGCAAGGTACTGCAGAGTACCTCCAGAGTATCCTGTTTGATGAAGGCCCCTTAGAGCTGAGTACTGTGGACGGTTGCATTTATCTGCATTGTGAGCATGCACCCCTAGACTGCAGTACCGAATCTGAGATGTCACTGTCTGAGGTTATAACTAAATTGAAAGTTTCTGGTGCGATCACTCAGCTTGATCTCTCAAGGCGTTGGTTTTCATCTCCAACAGACCTTCTTGAAGTTTTCAAATCACCCAAACTGTTGAGGAAGCTCATTGTGCGGGATATCTGTTTTGGAAATGACGCAAAAGAATCAGCCAATCTTGGCATCTCATTGGTGAGGCATATAAAATGGTACTGCCCTTCACTCCAAGAAATCGATGTAACAGGGTGTTCAGACGTTACCCGTGGTATCCTCCTTGAGCCAGAAGATGTGTTGCAAGAATATGGCATTCCTGTAGAAAGAGCCCTTGATGTGAAAATAATAGATTTGCTTGAAGAACATTATACCATTAAGGAACTTTTGACACCTTCGCACTTTTCCAAAGATTTAGTTACTGTAAGGAGGAGAATTAAGAAGTTTGTAAAAGAAGGTGGTCCAGTTAACATCAGTCATGATGGGTGGACATTTGTTCACACAGCCTCTGCCATTGGAGATGAAGTTTTGATTTCCTGGCTTCTGAATTCCGGTGGGAATTCCAAATTTCAATCAGAGGGCTCAAGGAAGCCATCAGCATTAGATATTGCTGTTTACCGCCATGATGCACGTATTTTCAAACTGTTGCTTGATGCACAGAAAACCAGTGAGTACGATCCTTCTAAGTTTGTGAAGATGTTGTGTCAATCTTCAGACGTATGCAATGTTCTTCGCCATTTTGTTGATCAGGCCAGTGCCCCCAACCCACTAGATGTAGTTACCTTTTACATGGAGAGCATGAGCTTGGAGTTAAAAGAGAAATTGCTGGTTGAAATCTTCAAGACACTAGAAACGTCCTTCCACGATGTTAAAGCAAAGATCCCCAGGATAGAAGTTATTCTAGCGGAGCTACTAAAGAAGTTGATGGCAGCGGGCTGTAGTCCAGATGTTCCTATTAAAGAGCTTAATAGCAAGACTCTACTCATGTGTGCAGTGTCTAGCCCTGTTTTGGTCAATATACTGTTGGATCTAGATGCCAAAAGTTGCATTAAGGATGAGGAAGGAAACACAGCGTTGTTTTATGCAGCAAGAGAAGCCGTTCATGGCCCAGTCGAGTCAATAGAGGCGCTGCGCTGTCTTCTTCAAAGTTGCAAGGAGGTAAACAAATGTAACTATCACGGAGAAACACCGCTTCTTTACACCGTCTCGACTCACGGATTCAAAAACCATAGTACTCTTCTTAGCAGGTTTTCCGCAGGATCTTATGTGAAAACATGGGAGGTATTGGTTGATGCAGGAGCGCGAATTGATGCCAAAAACTGCCAAAACGAATCCATCATAAACCTCATCCTGGAACAAATAAAGAATTTGTTACACCACTGTCAGACTTCTCAAGAAGAAGAGACTCTGATCAGTTATGCAGTTGATGAAACTACCAGAATGGTTAAGTTCGTTTGTGGCAAGGATAGGGAACTGATTAATAGCAGGGGTAGAGAAGGAAAAACAGCTCTTCACAATTTTGTAGGTTACTCCTCAATCCACGTTGATAAAATGGTTCAGATTGCTAAAGTCTTAATCGAATGCGGGTCTAGGTTGAACGCACCAAATGATAATGGCCAAACGCCGCTGCACTTGGTTAAGTCATGGAGTATGGCTGAGCTCCTTTTACAGCATGGTGGAAAGGCCAACGCACAAGATCATCAGGGGCGTTCGCCACTTCTTTGTCGATGTATTCAGGAGGCGAGTAACGAGGAGCCATTGGACATGGTTGGATGGTTAAAATATGGATTGAACTTTGGAATGGATCCTTGGTTGGAGGAAAAATACCACCAAAGTGTTTTCGACGTCTTTATGCAGCAGGGAAAGTTCGTTGCTCTTCATTGCCTTATTTCTGCCAGCATTGCCAAAGACAAGGAGACTGTCTTTAAGAAAGACCAGAAGGGTAACACTCTTTTGCACAAGTTATGCAATTGCAATTTGTCCCAAGAGAATCCGTGCTTCTGTCTCTTGCTCCAAGGAGGCGCCGATACCAATGCGTCAAATGAGGATGGTGACACTCCTCTACATATTCTCTGCAGGAAGATTAATCGTCTTTCTACGAAAAGAGAACGCTACTATCGGAAATATATAAGAATACTTCTCGAATATGGAGCCGACTGTAGTTTAAGAAACAAGAGCAATTTTTCTGTGCTTCAATTGATATCTCCGAAGAAGAATTTGTTATCATTTGTTAAGAGGTCTCGAAAACAACGAGAATCGAAACCATGTTTCAAGTGGATCCGTCACTCAAAAGCTCACGTTCAAAAATTATCCCAGGTGGTGAGAAGACGTAACGCAGACAACATTGATGAATTCTTCTATCATAAAGAGCCCATTGGTTCTGGATCTTGCGGCAGTGTTTTTGCTGCTATTAACTCCAAAGATGGAAAAGAAGTGGCTCTGAAAAGAGTAGAGAGATTACGCTTGCCAACACGTCGAGTAAATCGAGAAGTACAGACTCTTATACAACTTTCCAGCTGCCCGCATGTAGTGACGTATTTACGGTTTATTGAACGGACCGATTTCACCTGGATTGCGTTGGAGTTGATGGAGGGCGACTTGGATGATCTGTTGAGTTTGCAACTACCAGCTATACGATTTCCTCATCTTTGCAAAGATGTGTTGCAAGGTGTGCGATACTTACATGATAACAATTTTGTGCATCGGGAATTAAAGCCAACAAATATCTTGTTTCACTTTGTCGAAGGTGTACCACGTTCCAAGATCTCTGATTTTGGTCTCAGCAAAAATCTCGGAGCTGTGACCTCTTCTAGCTCGGGCCATTCCAATGTTGGCTCAAGATGCTGGATGGCCCCAGAAATACTTCGATCAGGCAGAGCTGAGCACACATTCCTATCCGATATGTTTCCGGTCGGCCTCATTTTCCATTATTTGTTAGCTCATGGAAGTCATCCTTTTAAAGGAACTGATGATGGCTCTTTTGGGGTGGTTGAAAAAAACATATTAGCTGACTCCAAATTTATTTGTGAGGACCTTAGTGAGGAAGCTAAGGAATTAATATTGGAGCTAATAGCTGCAAAAGAGGGTGACCGACTATCGGCTTCAGATGCACTGAGACATCCATACTTTTGGTCAGATGACAAAAAGGTGCACTTCTTAAAGGCAGTAGCCAATCAAACGGAAATTGCCACCTATAATCCTGGCGTAGATCCCGCTCCTCGCTTCGCTTCTCTGTGCGGTGACGAAATCCTTAGGAAGTACGGCTTTGCTGTGGAAGTTGGGCGAGTCAAAAACTCAAACAAGAATCTTGTGGCAGAGAAGTGCGTCGCCGAACTTGGGGATGAGCTTTTCCGTATTTGTCTTAGGGGTGATACGATCACTCCTCTCTCCTTAGCTGTGGCGACAGCCAATCTCAACAGCCGTGTCCGTAAAAGAGGATTGTCTGCCCGCGAGATGTTGCTTTAA

Transcript

amic_s0084.g17.t1

GCTAAAATCGGTCCCCACAGCAGTGCCAGCAGTAGATTGAGTGGAAAATAGCGTAAAGGCCATTTTCCATTAGGGAGACATTGGCATACAAAAGTTCCTGTCAAACAGAAGAAGTTCAGTGTAGTCAAGTGTAATCCTGAGAGCGACAGAGTAGAGGGTGTTAAAAAAAGAAGGATCTAGAATTTGATGCAGTCCTCCTAGAATGCACCCGACGAGTTCAATGGTGTGTCGAATCCGATAGTTTCGAATTCCTTGTTGTGTTGCAAGATAAACACGGAACGCGGCATCCTCTCGACCGCAAGCTTCTACATATGACCTTTTCTGCTTCGTAACACCTCTGCTTCAAGGAAAGTCAATACTGCATGAGCTATGCAATCTTCAGCTGTATTGTGACAGCAATATGGATTCAAGACCCGTTTCATATGATATGGTTATTTATGAACTCCTCAAACATATTGTCCAAACTGTTGGAGGAAAGATTAGGTTGGACAGTTTGGAAGAACAATTTCAAGGGCGAACTGGTTTTGCGTTATCATCATTGAAGAGTATTACAAGCACAAGTAGTAACCAGCAAGGTACTGCAGAGTACCTCCAGAGTATCCTGTTTGATGAAGGCCCCTTAGAGCTGAGTACTGTGGACGGTTGCATTTATCTGCATTGTGAGCATGCACCCCTAGACTGCAGTACCGAATCTGAGATGTCACTGTCTGAGGTTATAACTAAATTGAAAGTTTCTGGTGCGATCACTCAGCTTGATCTCTCAAGGCGTTGGTTTTCATCTCCAACAGACCTTCTTGAAGTTTTCAAATCACCCAAACTGTTGAGGAAGCTCATTGTGCGGGATATCTGTTTTGGAAATGACGCAAAAGAATCAGCCAATCTTGGCATCTCATTGGTGAGGCATATAAAATGGTACTGCCCTTCACTCCAAGAAATCGATGTAACAGGGTGTTCAGACGTTACCCGTGGTATCCTCCTTGAGCCAGAAGATGTGTTGCAAGAATATGGCATTCCTGTAGAAAGAGCCCTTGATGTGAAAATAATAGATTTGCTTGAAGAACATTATACCATTAAGGAACTTTTGACACCTTCGCACTTTTCCAAAGATTTAGTTACTGTAAGGAGGAGAATTAAGAAGTTTGTAAAAGAAGGTGGTCCAGTTAACATCAGTCATGATGGGTGGACATTTGTTCACACAGCCTCTGCCATTGGAGATGAAGTTTTGATTTCCTGGCTTCTGAATTCCGGTGGGAATTCCAAATTTCAATCAGAGGGCTCAAGGAAGCCATCAGCATTAGATATTGCTGTTTACCGCCATGATGCACGTATTTTCAAACTGTTGCTTGATGCACAGAAAACCAGTGAGTACGATCCTTCTAAGTTTGTGAAGATGTTGTGTCAATCTTCAGACGTATGCAATGTTCTTCGCCATTTTGTTGATCAGGCCAGTGCCCCCAACCCACTAGATGTAGTTACCTTTTACATGGAGAGCATGAGCTTGGAGTTAAAAGAGAAATTGCTGGTTGAAATCTTCAAGACACTAGAAACGTCCTTCCACGATGTTAAAGCAAAGATCCCCAGGATAGAAGTTATTCTAGCGGAGCTACTAAAGAAGTTGATGGCAGCGGGCTGTAGTCCAGATGTTCCTATTAAAGAGCTTAATAGCAAGACTCTACTCATGTGTGCAGTGTCTAGCCCTGTTTTGGTCAATATACTGTTGGATCTAGATGCCAAAAGTTGCATTAAGGATGAGGAAGGAAACACAGCGTTGTTTTATGCAGCAAGAGAAGCCGTTCATGGCCCAGTCGAGTCAATAGAGGCGCTGCGCTGTCTTCTTCAAAGTTGCAAGGAGGTAAACAAATGTAACTATCACGGAGAAACACCGCTTCTTTACACCGTCTCGACTCACGGATTCAAAAACCATAGTACTCTTCTTAGCAGGTTTTCCGCAGGATCTTATGTGAAAACATGGGAGGTATTGGTTGATGCAGGAGCGCGAATTGATGCCAAAAACTGCCAAAACGAATCCATCATAAACCTCATCCTGGAACAAATAAAGAATTTGTTACACCACTGTCAGACTTCTCAAGAAGAAGAGACTCTGATCAGTTATGCAGTTGATGAAACTACCAGAATGGTTAAGTTCGTTTGTGGCAAGGATAGGGAACTGATTAATAGCAGGGGTAGAGAAGGAAAAACAGCTCTTCACAATTTTGTAGGTTACTCCTCAATCCACGTTGATAAAATGGTTCAGATTGCTAAAGTCTTAATCGAATGCGGGTCTAGGTTGAACGCACCAAATGATAATGGCCAAACGCCGCTGCACTTGGTTAAGTCATGGAGTATGGCTGAGCTCCTTTTACAGCATGGTGGAAAGGCCAACGCACAAGATCATCAGGGGCGTTCGCCACTTCTTTGTCGATGTATTCAGGAGGCGAGTAACGAGGAGCCATTGGACATGGTTGGATGGTTAAAATATGGATTGAACTTTGGAATGGATCCTTGGTTGGAGGAAAAATACCACCAAAGTGTTTTCGACGTCTTTATGCAGCAGGGAAAGTTCGTTGCTCTTCATTGCCTTATTTCTGCCAGCATTGCCAAAGACAAGGAGACTGTCTTTAAGAAAGACCAGAAGGGTAACACTCTTTTGCACAAGTTATGCAATTGCAATTTGTCCCAAGAGAATCCGTGCTTCTGTCTCTTGCTCCAAGGAGGCGCCGATACCAATGCGTCAAATGAGGATGGTGACACTCCTCTACATATTCTCTGCAGGAAGATTAATCGTCTTTCTACGAAAAGAGAACGCTACTATCGGAAATATATAAGAATACTTCTCGAATATGGAGCCGACTGTAGTTTAAGAAACAAGAGCAATTTTTCTGTGCTTCAATTGATATCTCCGAAGAAGAATTTGTTATCATTTGTTAAGAGGTCTCGAAAACAACGAGAATCGAAACCATGTTTCAAGTGGATCCGTCACTCAAAAGCTCACGTTCAAAAATTATCCCAGGTGGTGAGAAGACGTAACGCAGACAACATTGATGAATTCTTCTATCATAAAGAGCCCATTGGTTCTGGATCTTGCGGCAGTGTTTTTGCTGCTATTAACTCCAAAGATGGAAAAGAAGTGGCTCTGAAAAGAGTAGAGAGATTACGCTTGCCAACACGTCGAGTAAATCGAGAAGTACAGACTCTTATACAACTTTCCAGCTGCCCGCATGTAGTGACGTATTTACGGTTTATTGAACGGACCGATTTCACCTGGATTGCGTTGGAGTTGATGGAGGGCGACTTGGATGATCTGTTGAGTTTGCAACTACCAGCTATACGATTTCCTCATCTTTGCAAAGATGTGTTGCAAGGTGTGCGATACTTACATGATAACAATTTTGTGCATCGGGAATTAAAGCCAACAAATATCTTGTTTCACTTTGTCGAAGGTGTACCACGTTCCAAGATCTCTGATTTTGGTCTCAGCAAAAATCTCGGAGCTGTGACCTCTTCTAGCTCGGGCCATTCCAATGTTGGCTCAAGATGCTGGATGGCCCCAGAAATACTTCGATCAGGCAGAGCTGAGCACACATTCCTATCCGATATGTTTCCGGTCGGCCTCATTTTCCATTATTTGTTAGCTCATGGAAGTCATCCTTTTAAAGGAACTGATGATGGCTCTTTTGGGGTGGTTGAAAAAAACATATTAGCTGACTCCAAATTTATTTGTGAGGACCTTAGTGAGGAAGCTAAGGAATTAATATTGGAGCTAATAGCTGCAAAAGAGGGTGACCGACTATCGGCTTCAGATGCACTGAGACATCCATACTTTTGGTCAGATGACAAAAAGGTGCACTTCTTAAAGGCAGTAGCCAATCAAACGGAAATTGCCACCTATAATCCTGGCGTAGATCCCGCTCCTCGCTTCGCTTCTCTGTGCGGTGACGAAATCCTTAGGAAGTACGGCTTTGCTGTGGAAGTTGGGCGAGTCAAAAACTCAAACAAGAATCTTGTGGCAGAGAAGTGCGTCGCCGAACTTGGGGATGAGCTTTTCCGTATTTGTCTTAGGGGTGATACGATCACTCCTCTCTCCTTAGCTGTGGCGACAGCCAATCTCAACAGCCGTGTCCGTAAAAGAGGATTGTCTGCCCGCGAGATGTTGCTTTAACGCGACCAAATCACCAACGCACAGATCCCCTTTTCTGACCTCCAAGTTGTTCGATAACAGCACTCCTTGCGGCTCGGTAACCATCCCGCTAGGGAGAGATCCAAAACCCCAGGAAGTTGATTATTCGCCTCCTGTCGCTCGACCTAAATTTTCAAGAATTATTTCCACAGCTGCACGGCTCAGTCTCCAAATTAGATCCATTCGTTTACAAAGACGATGGCCTACGTGTTGGTTGTTGTATTTTGTAAATCTCTTTGACAATGTGAATCATCCAGTACTATTACCCAAAGGCTGTCACTGAGAATCTCGTCACCAAGTGTAACCATGAAATTCAACGAGATTTGGTCCACCATTGCTTCATGTGTCAAATGCAGAAAACGATGAGATGCAGCTGTTGAGGGAaagatgtctgatattcctgaggaccggcttgaacgctttcaacctttcacatattgcggtctggatcactttggtccctgcatgattaaagatggatgtaaggaattaaaacgctatgcagtcctcttcaggtgcatgtcctcaagagccatcGCGCTAGAAACCATTAGCTTGCTCGTGTAGCTACTGTTTGCTCTCGCATTAGTGGTTAATTCTGCAAAGTCCAGGTAGCTCCAACGGACTAAAAGGAAGTGAGGTGTGGCCCAATGCGTTACCTGGAGACACCGATGCAGAAACTGATACTTCTTGTTCCATCACGAGAATAAAGATCAAGGAAGTCC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7XIT1	Serine/threonine-protein kinase/endoribonuclease IRE1 OS=Oryza sativa subsp. japonica OX=39947 GN=IRE1 PE=1 SV=1
Q91XS8	Serine/threonine-protein kinase 17B OS=Rattus norvegicus OX=10116 GN=Stk17b PE=1 SV=1
Q8BG48	Serine/threonine-protein kinase 17B OS=Mus musculus OX=10090 GN=Stk17b PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000794 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR045133 all species →	Family	Serine/threonine-protein kinase/endoribonuclease IRE1/2-like	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13954 all species →	IRE1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0030968 all species →	Biological Process	endoplasmic reticulum unfolded protein response	Interproscan
GO:0036498 all species →	Biological Process	IRE1-mediated unfolded protein response	Interproscan
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan
GO:0070059 all species →	Biological Process	intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress	Interproscan
GO:1990604 all species →	Cellular Component	IRE1-TRAF2-ASK1 complex	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0084.g17.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.