Gene detail

Detailed information of amic_s0084.g19.t2 in Acropora microphthalma

Genomic Location: sc0000084_pilon:281727...306735
NR annotation: XP_044167609.1, LOW QUALITY PROTEIN: coiled-coil domain-containing protein 78-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0084.g19.t2

ATGAACATTGAAGTTTTAGCTCGCGTTCGGCCTCCTAAACGCGGCGACCGTTTCTCTCTGAATATCTCTGGCTCCCGTGTACAAGCAGGAGATGGAACTGGGCATATTTTTGCTTCTTTATACAAACCTGAGTCTCTAACATACGATATCTTCCGAGATTCTTTTTCTCCACTTGTTGATCTTTTGATCGCTGGATACAATGTTTGTGTGCTGGTTTTTGGGGAAACTGGATCAGGAAAATCTTTCTCTTTGGCAGGAGAGAAAAATGCAAAGGCTGGCATGATCCCTTTAATAATTAACTCCGTTTTCACGAAAATGAGGAACGAAAGATCTGCAAATGTCAGAGTACAACGGAACGAAGTTAACGACGGCGTTGTCTTTGTGCAATTCGTAGAAGTTTATAACGAAAAATTAAGAGATCTTCTTGTACTTCCTCATGAAGACAGGAATGTTGATGTAGCTGAAGATGGTTTGAATGGCGCTTATGTGCAGAATGCCACTCACAAAAGAGTCACTGATGCTGCGGAATGCACCAGCTTGTTTAGGCAAGGATGGGCAAACAGAACGAAAAGCCAAACTGATTTTGAATCCAGGGCAACAGTGTTTTTTACCTTGGACATAACAATGGTTCCCAGAGACAGCCAAGATCCCTGCACCTCTCGATTTTTAATAGTGAAATTGCCTGGTGCAGAAAAGCTAGCTGAAGATCTGACACAGTTGCGGATGAGAGAGGGTCCCACGATGAACAAAGCGGTTGTCTCCTTTGGAAACCTTGTATCAAAATTAGCGGCTTCACAAAGATCTTCCAGGGTTATTCAGTATGGAGAATCCAAGGTAACTATGTTGCTGAAGGATGCACTTGGTGGCAATTGCAGAACCAAAGCTCTCATTACACTGGATGCTGTTGATACACCAAACCTCTCTGTTGTACTCAAAACTGCAGGACAGCTGGCACAAGTGCAAAATTATCCCATTATCAATGACTCCATGGCAAAGGAACTACTGTGCCAATTTAGGACAAAGATTATCAAGCTTGAAGATGATGTTCGGGTATCCATGGGAACAAGCAACAGTGCCTCTGTCGACAATCAGTCAAGAGCATGGGAGCTTACAAACCAGATGTCTCAACTGACACAGGAaaatTTCCAGTTACAGGAGAGGAATGAACAGCTGCACACAAGATTAGGGGATGTGCAAGCAAGGTACAGTGAACTAATGAAATCAAAGACACTGCTCTCATCAAAGCTTATCTCCAGTGAGGAAGAAAAATTGAGGATACTTGCTCTTGAAAACAAAGTTATGGAGTTACAATTGTACTTAGATAAAGCACACAGTGACCAAACAGCCACAAGAGAACAGCTTGACGGGATGGAAATGGAACACAAAGAACTAGTGAATGAATACATTGCTTTGAAAACCAGCCATGTTCAACTGACGTCAGACTATCAAAAGGAGGTCACTAAAAATGAAGAACTTGGTCTGGAGCTTGTGACGTTGCTTAACACCAAGGAAAAACTTCAACATGACAAAGAATCTGTAGAACTTGAAAAAATGCAGGAGTACTATGATCAGCTAAGAAGAATAACAAGCAAGTTCTCCCGAAGCTCTTTGCGTGAGAAGGATGATCTGTCGAGAAGTGTGCTCAACTTGCAATCAGAGAAGTTTGAATTGGAAAAACAGTTGCTCCATAACAGCCAACAAAGGGAGGGAAAAGTTGAAACATTGAGAGTACAGCACCAAAGAGAACTTGTCAGTTTAGAACAAAGAATATCCAAACTGAGAAATGAGCTGCAAGAAGCCAAAGATTCTTACAGAGAGGCTCAACGTAAGCTTGCTCTGCAGTCTGCGGAATTGATATCGGCCAATGGTGAGAGACATCGTTTAACTGAAGAGAACAACCATCTTGATGAGCGTTTGAAAGAACTAACTGCAGAATATACTAACAGGCTTCAGCAGTACATTCATGATATTGCGGTTTTTTGTGAACAAGCCAAAGAGAAGCATTCATCAGGGGAGTCCCTCCAATGGTATGTTGATGTGATGGTGGGACAGATGACTCATGCACATGAAACAAGGGAACAAGATTTGCAAAGCAAAATACATGAATTGAAAGTAACTGTTAAAGACATTACACAGAAGAATGAGAATTTGTCATCAGCATACAGAATGCTAAAGTATGATGTGGAAACCAGAAGAGGTCACCAGGCACCACAGGCAGACCAAGCTGAATTCTACTTTCCATCAGACATTGAACTCAGCATGGCACAGAGTCGAGAAATTGCCCAACTTCAGTCTGAACTCAAAGAAATGAAGTATACTAATGACGAACTAAAACAAAAGTTAGCTAAGAAAGCAGATGAACAGCGCGATGATTTGCCGTCATTATCTGCAGGTCAAGCAACGGTAGAAATGGGTTGGGGCTATTTAAGGAAGCAACTCAGAGAATTTACACTCAACACTCAGCAAGATCTTGAAAGCGAGCGTGCCTCTCTCTTGACTCGCTGTATCCTGGCTGAGGAACAACAAGCACGGCTTCAACAATACATAGACACCAATCTGAAAAGTTATCAGGAAGAAATAGTCCGTTTGCGTGGACTGCTTGGAAAAGCTACACATAAAAATGGTAGACGCTAG

Transcript

amic_s0084.g19.t2

GGTCAGTTTATTTCTATTTGGTTATGCACGAGACGTTACTAGAGAGAACATCCATGGAAATCTCCATATAGTCTTCTACTGCCAGGCCAGGGTGCTAATGTAATGGCGGATCACTTTGAAAACTGTTTACAAGATGAACATTGAAGTTTTAGCTCGCGTTCGGCCTCCTAAACGCGGCGACCGTTTCTCTCTGAATATCTCTGGCTCCCGTGTACAAGCAGGAGATGGAACTGGGCATATTTTTGCTTCTTTATACAAACCTGAGTCTCTAACATACGATATCTTCCGAGATTCTTTTTCTCCACTTGTTGATCTTTTGATCGCTGGATACAATGTTTGTGTGCTGGTTTTTGGGGAAACTGGATCAGGAAAATCTTTCTCTTTGGCAGGAGAGAAAAATGCAAAGGCTGGCATGATCCCTTTAATAATTAACTCCGTTTTCACGAAAATGAGGAACGAAAGATCTGCAAATGTCAGAGTACAACGGAACGAAGTTAACGACGGCGTTGTCTTTGTGCAATTCGTAGAAGTTTATAACGAAAAATTAAGAGATCTTCTTGTACTTCCTCATGAAGACAGGAATGTTGATGTAGCTGAAGATGGTTTGAATGGCGCTTATGTGCAGAATGCCACTCACAAAAGAGTCACTGATGCTGCGGAATGCACCAGCTTGTTTAGGCAAGGATGGGCAAACAGAACGAAAAGCCAAACTGATTTTGAATCCAGGGCAACAGTGTTTTTTACCTTGGACATAACAATGGTTCCCAGAGACAGCCAAGATCCCTGCACCTCTCGATTTTTAATAGTGAAATTGCCTGGTGCAGAAAAGCTAGCTGAAGATCTGACACAGTTGCGGATGAGAGAGGGTCCCACGATGAACAAAGCGGTTGTCTCCTTTGGAAACCTTGTATCAAAATTAGCGGCTTCACAAAGATCTTCCAGGGTTATTCAGTATGGAGAATCCAAGGTAACTATGTTGCTGAAGGATGCACTTGGTGGCAATTGCAGAACCAAAGCTCTCATTACACTGGATGCTGTTGATACACCAAACCTCTCTGTTGTACTCAAAACTGCAGGACAGCTGGCACAAGTGCAAAATTATCCCATTATCAATGACTCCATGGCAAAGGAACTACTGTGCCAATTTAGGACAAAGATTATCAAGCTTGAAGATGATGTTCGGGTATCCATGGGAACAAGCAACAGTGCCTCTGTCGACAATCAGTCAAGAGCATGGGAGCTTACAAACCAGATGTCTCAACTGACACAGGAaaatTTCCAGTTACAGGAGAGGAATGAACAGCTGCACACAAGATTAGGGGATGTGCAAGCAAGGTACAGTGAACTAATGAAATCAAAGACACTGCTCTCATCAAAGCTTATCTCCAGTGAGGAAGAAAAATTGAGGATACTTGCTCTTGAAAACAAAGTTATGGAGTTACAATTGTACTTAGATAAAGCACACAGTGACCAAACAGCCACAAGAGAACAGCTTGACGGGATGGAAATGGAACACAAAGAACTAGTGAATGAATACATTGCTTTGAAAACCAGCCATGTTCAACTGACGTCAGACTATCAAAAGGAGGTCACTAAAAATGAAGAACTTGGTCTGGAGCTTGTGACGTTGCTTAACACCAAGGAAAAACTTCAACATGACAAAGAATCTGTAGAACTTGAAAAAATGCAGGAGTACTATGATCAGCTAAGAAGAATAACAAGCAAGTTCTCCCGAAGCTCTTTGCGTGAGAAGGATGATCTGTCGAGAAGTGTGCTCAACTTGCAATCAGAGAAGTTTGAATTGGAAAAACAGTTGCTCCATAACAGCCAACAAAGGGAGGGAAAAGTTGAAACATTGAGAGTACAGCACCAAAGAGAACTTGTCAGTTTAGAACAAAGAATATCCAAACTGAGAAATGAGCTGCAAGAAGCCAAAGATTCTTACAGAGAGGCTCAACGTAAGCTTGCTCTGCAGTCTGCGGAATTGATATCGGCCAATGGTGAGAGACATCGTTTAACTGAAGAGAACAACCATCTTGATGAGCGTTTGAAAGAACTAACTGCAGAATATACTAACAGGCTTCAGCAGTACATTCATGATATTGCGGTTTTTTGTGAACAAGCCAAAGAGAAGCATTCATCAGGGGAGTCCCTCCAATGGTATGTTGATGTGATGGTGGGACAGATGACTCATGCACATGAAACAAGGGAACAAGATTTGCAAAGCAAAATACATGAATTGAAAGTAACTGTTAAAGACATTACACAGAAGAATGAGAATTTGTCATCAGCATACAGAATGCTAAAGTATGATGTGGAAACCAGAAGAGGTCACCAGGCACCACAGGCAGACCAAGCTGAATTCTACTTTCCATCAGACATTGAACTCAGCATGGCACAGAGTCGAGAAATTGCCCAACTTCAGTCTGAACTCAAAGAAATGAAGTATACTAATGACGAACTAAAACAAAAGTTAGCTAAGAAAGCAGATGAACAGCGCGATGATTTGCCGTCATTATCTGCAGGTCAAGCAACGGTAGAAATGGGTTGGGGCTATTTAAGGAAGCAACTCAGAGAATTTACACTCAACACTCAGCAAGATCTTGAAAGCGAGCGTGCCTCTCTCTTGACTCGCTGTATCCTGGCTGAGGAACAACAAGCACGGCTTCAACAATACATAGACACCAATCTGAAAAGTTATCAGGAAGAAATAGTCCGTTTGCGTGGACTGCTTGGAAAAGCTACACATAAAAATGGTAGACGCTAGACCTTGATATTGTCGGACAACATCCTGCTTGAGAGATTGGGCGACAGCATCCTCGTCGTTATGTAATTGGTTATTAGTCATAGCGTGACACACAAGCAACAAGACCGAAGCTACTCTTTGTGTCTTGGCAGTTTTATTAGGTGTTGTGATCGAGTGAGCGTGCAAAACCGAAGATAGATCCAGTCCTTTTCGGAATGGAAGCGAAGGGAAAGATTGAGAGGAGAGAGAGACCGAGTAAAACAACCGCAGGCAGCGCGAACGCTGGCTCGAAGACAACATCTCAGCCCGAAATAAAATTCACACACAGAATACAAAAGACGGTGAAAAGTTAAACAAAGTGAAGACCGATTAAGTACCCTTGATTCTCCCACAGACATTACTAGATTACTTTTAGAAACTATTTTTCACCTTATATATAAGgtctctacaaggtgagtggacaacagacgtgtccattttacattgttttctggtatgaggtcggacgtcagcatgtaaaggcgctacaggcagccgctttcagttcatctttgacttccccaaggtacaaacaagacctgaccacaacaccgggaactccttgccctactcttttcgaacagtgtatagattctttaattcccgcaagattgtaaacaatCGGTCGGTCGGCGGTCCTCGTGGATCAAtaggcagttttagcagcaacgacaggaacggcaacaacaacgccataaattaagaatttgattggtcgcgcgtggaaaaataatcgtgctgcacgtgcggacgctcttatgaaaaagtccgtgccgttctctgcaaaacaacaacatgaaatgaccacatttaccgtttcgatgaacacttgagcatgcaactgataatctttagttctttgtattcactttgacagcactcagactaatccagttgcagggttcttggttaatattgtaaaatgccaacaagatgggataatcgcaaaataatctcagttgcgcaagtgtttattttcaagtaacgttttTGTCTAAACTGAATACGTTTGCTTTCCTCCGGAAAGGCTAAAAATATCATAGTACCTTATATGCGTTCGTCAATTACTAATTTGTAATTAATATGATTACGATAGCAAAAAAAGACCTTTAAACGTTTAGTAGGTAACTAATAGGACCCCAGTCTATAGTAATGGCGCGGTGTAATATGAGGGTTTATTTCGGAATGGTGTATCTTGGAGCTTGGGCGTTGTCTTTGGTTACAGGTATTTATTTATTTATTTTCTTAAGGGTATTTAATTTTATTGCAATCTATGGTACTTTAAGACTAGATCATAAGAAAATAACTATAACAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q66KE8	Coiled-coil domain-containing protein 78 OS=Xenopus laevis OX=8355 GN=ccdc78 PE=2 SV=1
Q9VB25	Kinesin-like protein Klp98A OS=Drosophila melanogaster OX=7227 GN=Klp98A PE=1 SV=2
Q9H1H9	Kinesin-like protein KIF13A OS=Homo sapiens OX=9606 GN=KIF13A PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005782 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14739 all species →	DUF4472	Domain of unknown function (DUF4472)	Family	Interproscan
PF00225 all species →	Kinesin	Kinesin motor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001752 all species →	Domain	Kinesin motor domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR029329 all species →	Domain	Domain of unknown function DUF4472	Interproscan
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan
IPR039873 all species →	Family	Coiled-coil domain-containing protein 78	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22106 all species →	COILED-COIL DOMAIN-CONTAINING PROTEIN 78	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003777 all species →	Molecular Function	microtubule motor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0084.g19.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.