Gene detail

Detailed information of amic_s0084.g40.t1 in Acropora microphthalma

Genomic Location: sc0000084_pilon:674443...702511
NR annotation: XP_044169232.1, receptor-type tyrosine-protein phosphatase F-like isoform X2 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0084.g40.t1

ATGGCTTCATTGCGTGTTACTCTTTTTCTGAGCTTTCTGTGGTCGGTGAATGCAAACGAACTCAGTCCTCCACAAGTGCCCAAGGGATATGTCACGGGTGACACAAGCATTAAACTGACTTGGGAGGTGAAATCTCCGTCAAAAGGAAGCATTTTCGAGCTACGATGGAAAAGCGACGGCAACGAATCGTCAATGCTGCTTCCTGGCGTGACAAACAGCGTGACACTGAATCATCTTAAGGTTTACACGGGATACTCTTTTCGAATTCGACGAGGCTTCAAAAATGGAACATGGGGTGCTTTCAGCAAGTATACCCGCGTATGGACCCCAGAGGGAGCTCCCACAGGCCCACCAGCCAACGTGACAGCGTTTAACAAAAGCGCCGTCGCCATCATGGTTTTTTGGGAACGGATTCCAAGGCCCCACCGGAATGGAATAGTGGTTGGTTACAAAGTGTGCTACAAAAGAGCTGATTCTGTGAACAGTGTTATGTACTGCACAGCGGTTCACGCCCAAGGAATAGAGCTTGGTGGCTTGAAGCCGTATACGCCTTATTGGGTGACAGTGTTGGGTTACACTAGCAAAGGCGAAGGACCCACAAGTGAACCGGTAAAAGTGTGGACAGACCAGTTTGTACCATCCGCCGCACCGAAAGTGTTGTCTCTGTCGGCCAATAAAACAGCTATCGAAGTCTCCTGGGCCCCAATACCTCGGAAGGACGTCAACGGAATCCTGCGAGGATATTACGTCATTTACTGGAAAAGGCCACGCATGTCTCCTGATAATCACGTGATTCAAGTCAACCAGTCAACACTTCGTGTGGTTATCACTGGTCTCGAAAGGAATTCCACGTATGGGCTTCGTCTGGCGGGGCTCACAAAAGTTAGGGCTTATCTTAGAAATGGCGCTCTTAGCCCTACATACAACGTAACCACCAAATACGGTCTACACGCTCCACAAAATGTGAAAGTATACAGCATATGCTCGACCTGCCTGCGAGTGACTTGGGATCCAGTATTTGTTCCCATAGATGAGAATCCCTTAACAGGCTATCGCTTAGTCTGCCGCCAGAAGGCTTCTGGAAAGATAATCGTAAAAGTTGTTGGACCTACACAGTCAAGCACTAAGTTGAAATATCTTCAAAAATTTTCCTCTTACACTATCACCGTGTCTTCAGTGGGGAAAAATGAATTGGGGGACCCTAGCGAGGCAGTGACGGTGACCACCCTGGAAGATGTCCCCAGCCGAGCCCCAAACGTAACTCAGGCTCGAAGCTCAGGCCCTCGCAGTATATTCATAGAATGGAGTCCAGTCCCTGAAACCTACTTGCACGGCATTTTGAGAGGATACTATTTGTATTACAAGAAGGGAATATCCAGGGCAAGACGATTTGCGATTGACTTGGGGGTTGTGAAAACAATATCTGTTGACAAGACAGCAAGGAGTCTGGAAGTAAAAGGCTTAACGCCCTTCACATTTTACGAGGTCTGGGTGACTGCTTACACGAATGTGGGTTACGGTCCGGCAAGCAAGCCGCTGACAGTTATCACAGACGAGGATGTTCCATCTCGAGCTCCTCGAATTCTTGAAGTCTCAGCCATAAGTCCGGAGTCTGTGTTTGTCAAATGGGAACCCATTCCACGGAGACACTCGCAAGGGCGTCTGCAAGGTTACCTCTTGTTCTACAGTCAGAAGGACACAAGACGGCATGTTATAAATATCACCGTAAACTCATCTTTGACGCATGTCACCTTGGACCATATGAAACCGCAAACAGAGTATGTTGTGTGGATCGCAGGCTTTACAGGAAAGGGTGCCGGCCCAGACAGCGAAAGGAAGTTTGTTTCCACTCCAGTCCCTGTTCCAGGCAGGCCTTTGAATGTGCGAGTTGACGCAGAGAGCCCTCGGAGCGTGCGTATCACGTGGCAATCACAAACGGGCTTGGCTGGCCAAGTCACCCGTTACATGGTGGAGTGGCGTCATGTGGGTAAACCCGCTGACTTAAACCTGAATGGACAAAAGGTTGTGTCAGTGGGCTCTCCTTACCTCAGGGAGGCTCAAGTTGATGGACTGAAACCCTATAACATGTATTCGTTTGTGGTCCAAGAGGAAGTTCGGTCTAGCAACTGGAGCAAATTCTCTGCTGATGTGCTTTTTATTATGCCAGAAGATGTTCCGTCACCTCCTCGCGGAGTTTTCATGAAGTCGAAGGAGGAATTGCGCTTGGTTCTTCAGTGGAGAAAGCCAGAAGAAACTAACGGGGTTATCAAGAAATATGTTGTGCATTTTACTAACGCCAACGGAGAGAATATAACCTATACCGCATATTCTGAAGTGGACAAGGAGAATGTGACGCACGAATTCACTCTCCCTGATGTCGAGGCTGAGTATAAGATAAAGGTACAAGCATACAATTCTTTACCAGGACGCATGAGTGAAGAGATCACAGTCCGTCATGAACCAAGAATTCAGATATCAGAAGTGCACAATCCCGAATCTTCGAAGTCCAAGCCAATCTGGATTGTAGCTATTTTGATTGGTGTTATCCTGCTGTTGTTGTTGGTAGTTGCAATTGTACTTATCAGAAGGAATTCTAAGCGTCTTATGGAGCCTATACAGAAATTATCGATCATTTCTAAGAGCTCACCACCAAGGCAACCCATTCCAGTGAAAGAGCTGGCAGCTCACTGCGCCCGTTTCCATGCCAACAACAACGCCTTGTTCATCGATGAGTTTAAGAGCCTTGAACGCGTAGCGTGGAAATCTTCTTGGGAAGCGAGTCACGCGGCCTTTAATAGAGGCAAGAACCGCTACTGCAATATCGTCGCATATGACCACAGTCGAGTTGTGTTGAAATCCGTGAGAGACATCGCTGGATCAGACTACATCAATGCTAATTATGTTGATGGCTACAACTCTCCAGCCAAGTACATTGCAACTCAAGGTCCTTTGAAGCACACTGTGAACGATTTCTGGAGAATGGTTTGGGAGAAGAATGTAAAGACCATTGTGATGATCGAAACACACGACAACAACAAAGATCCTGACAGTGAGAAATATTGGCAAGAAACAGAACCCACTGAGTATGGTCACGTGACAGTGTCACACCTCAGTAGTTGTGCCATGACGGACTGGGTCGTCAGGGAATTTATCGTTTGGTCAACAGAAACTGATTGTACAGAAAAGCGGGATGTGTTTCAATATCACTTCACTAATTGGCCTGATCACGGGGTGCCATTTGACACTTCATCGTTCTTGATGTTCTATCACAAACTGAGGGGCGCTTTGTCTGTTGATCCAGGACCTGTTCTAGTTCACTGCAGCGCTGGCGTTGGAAGAACAGGTTGCTTCATCGCCATCGATTCTTTGATGGAACAGATGGAATCCGAAGAGCTGGTGGACGTGTATGGGTTTGTTACCAAGATGAGAAATCAAAGAAATTTTATGGTGCAAACTCAGGAGCAGTACTGGTTCATCCATGATGTTCTCAGAGACTCATGCATCTGCGGTGAGACTACCATCTCATCAAACGAACTGGGCAGCGGTCTGCTTTGCGTGTCTGGAGTTGAGCCCGAGGTTGTTGAACAAAGAACAGCGGAGTTTGAGAATCTTCAAGTCTTTCCAGTAGATTATCTGATGTTTAAGGATGCAATGGAGCATTGCAACTTGCGAAAGAACCGCTGTCAGGAGACATTGCCGTTTGACCACAACAGAGTCCGACTCAGTGTCATGCCGGGTGAACTTGGTTCAGATTACATCAACGCAAGCTTCATTGATAGTTACAACGAGTGTCAAATATATATCGCCACTCAAGCACCAATGGAAAACACCGTCGGCGACTTCTGGCGCATGATCTGGGAGCAGCGGTCTACCATTGTTGTCATGCTCGACGATTCAGAAGGCACTGAGTCGGAACAAAGCACACGATATTGGCCAGATGAAAGTTGCAATTCATATGGAAGCATATACGTATCCAAGATTGACGAGGAAAGACTCGAAGATCTTACGCAGAGAGTGTTCAAACTTTGGCAGCGAGGGAGCGCTGAAAGTCGGCTGTTATATCATTTTCAATACCGTCGTTGGCTGGGGAACACGCTCCCTCGTGCCCAGTCGTTTGTGTACCTTCATCAACAAGTCCACAAGATGCGGTCTGGGAATGAGCGCGAGGGCTCCATAGTTGTCCATTGCAGTAACGGTGATGGCCGAACTGGAGTATTTCTCGCCCTGTCTTTGAGTATCGAACGATTGGAGACCGAGGACAGCGTCGACATTTTCCAGACTCTTAGATGGTTAAGGTCACAGAGAGCGAGACTGGTTACTAGTTTGGAACAGTACAATTACTGCTATGATCTGATCAAGAGTTACTTGGCCTGGAGAACCATCAATACAATCCAGAACGATTACGTTTGA

Transcript

amic_s0084.g40.t1

AATAGAATCGTTCAAGTTCTTTCATCAAGAAACAGCGCTGTGGATTATCTTACTCGTTTGCCATAGTATGTGAAGTGGAGAAATTTGACCAGACGTCTTTGAATAGAAAATAAGAATCCAAAAGGCGCGATCAGATCAAAACGGCAGAATGGCTTCATTGCGTGTTACTCTTTTTCTGAGCTTTCTGTGGTCGGTGAATGCAAACGAACTCAGTCCTCCACAAGTGCCCAAGGGATATGTCACGGGTGACACAAGCATTAAACTGACTTGGGAGGTGAAATCTCCGTCAAAAGGAAGCATTTTCGAGCTACGATGGAAAAGCGACGGCAACGAATCGTCAATGCTGCTTCCTGGCGTGACAAACAGCGTGACACTGAATCATCTTAAGGTTTACACGGGATACTCTTTTCGAATTCGACGAGGCTTCAAAAATGGAACATGGGGTGCTTTCAGCAAGTATACCCGCGTATGGACCCCAGAGGGAGCTCCCACAGGCCCACCAGCCAACGTGACAGCGTTTAACAAAAGCGCCGTCGCCATCATGGTTTTTTGGGAACGGATTCCAAGGCCCCACCGGAATGGAATAGTGGTTGGTTACAAAGTGTGCTACAAAAGAGCTGATTCTGTGAACAGTGTTATGTACTGCACAGCGGTTCACGCCCAAGGAATAGAGCTTGGTGGCTTGAAGCCGTATACGCCTTATTGGGTGACAGTGTTGGGTTACACTAGCAAAGGCGAAGGACCCACAAGTGAACCGGTAAAAGTGTGGACAGACCAGTTTGTACCATCCGCCGCACCGAAAGTGTTGTCTCTGTCGGCCAATAAAACAGCTATCGAAGTCTCCTGGGCCCCAATACCTCGGAAGGACGTCAACGGAATCCTGCGAGGATATTACGTCATTTACTGGAAAAGGCCACGCATGTCTCCTGATAATCACGTGATTCAAGTCAACCAGTCAACACTTCGTGTGGTTATCACTGGTCTCGAAAGGAATTCCACGTATGGGCTTCGTCTGGCGGGGCTCACAAAAGTTAGGGCTTATCTTAGAAATGGCGCTCTTAGCCCTACATACAACGTAACCACCAAATACGGTCTACACGCTCCACAAAATGTGAAAGTATACAGCATATGCTCGACCTGCCTGCGAGTGACTTGGGATCCAGTATTTGTTCCCATAGATGAGAATCCCTTAACAGGCTATCGCTTAGTCTGCCGCCAGAAGGCTTCTGGAAAGATAATCGTAAAAGTTGTTGGACCTACACAGTCAAGCACTAAGTTGAAATATCTTCAAAAATTTTCCTCTTACACTATCACCGTGTCTTCAGTGGGGAAAAATGAATTGGGGGACCCTAGCGAGGCAGTGACGGTGACCACCCTGGAAGATGTCCCCAGCCGAGCCCCAAACGTAACTCAGGCTCGAAGCTCAGGCCCTCGCAGTATATTCATAGAATGGAGTCCAGTCCCTGAAACCTACTTGCACGGCATTTTGAGAGGATACTATTTGTATTACAAGAAGGGAATATCCAGGGCAAGACGATTTGCGATTGACTTGGGGGTTGTGAAAACAATATCTGTTGACAAGACAGCAAGGAGTCTGGAAGTAAAAGGCTTAACGCCCTTCACATTTTACGAGGTCTGGGTGACTGCTTACACGAATGTGGGTTACGGTCCGGCAAGCAAGCCGCTGACAGTTATCACAGACGAGGATGTTCCATCTCGAGCTCCTCGAATTCTTGAAGTCTCAGCCATAAGTCCGGAGTCTGTGTTTGTCAAATGGGAACCCATTCCACGGAGACACTCGCAAGGGCGTCTGCAAGGTTACCTCTTGTTCTACAGTCAGAAGGACACAAGACGGCATGTTATAAATATCACCGTAAACTCATCTTTGACGCATGTCACCTTGGACCATATGAAACCGCAAACAGAGTATGTTGTGTGGATCGCAGGCTTTACAGGAAAGGGTGCCGGCCCAGACAGCGAAAGGAAGTTTGTTTCCACTCCAGTCCCTGTTCCAGGCAGGCCTTTGAATGTGCGAGTTGACGCAGAGAGCCCTCGGAGCGTGCGTATCACGTGGCAATCACAAACGGGCTTGGCTGGCCAAGTCACCCGTTACATGGTGGAGTGGCGTCATGTGGGTAAACCCGCTGACTTAAACCTGAATGGACAAAAGGTTGTGTCAGTGGGCTCTCCTTACCTCAGGGAGGCTCAAGTTGATGGACTGAAACCCTATAACATGTATTCGTTTGTGGTCCAAGAGGAAGTTCGGTCTAGCAACTGGAGCAAATTCTCTGCTGATGTGCTTTTTATTATGCCAGAAGATGTTCCGTCACCTCCTCGCGGAGTTTTCATGAAGTCGAAGGAGGAATTGCGCTTGGTTCTTCAGTGGAGAAAGCCAGAAGAAACTAACGGGGTTATCAAGAAATATGTTGTGCATTTTACTAACGCCAACGGAGAGAATATAACCTATACCGCATATTCTGAAGTGGACAAGGAGAATGTGACGCACGAATTCACTCTCCCTGATGTCGAGGCTGAGTATAAGATAAAGGTACAAGCATACAATTCTTTACCAGGACGCATGAGTGAAGAGATCACAGTCCGTCATGAACCAAGAATTCAGATATCAGAAGTGCACAATCCCGAATCTTCGAAGTCCAAGCCAATCTGGATTGTAGCTATTTTGATTGGTGTTATCCTGCTGTTGTTGTTGGTAGTTGCAATTGTACTTATCAGAAGGAATTCTAAGCGTCTTATGGAGCCTATACAGAAATTATCGATCATTTCTAAGAGCTCACCACCAAGGCAACCCATTCCAGTGAAAGAGCTGGCAGCTCACTGCGCCCGTTTCCATGCCAACAACAACGCCTTGTTCATCGATGAGTTTAAGAGCCTTGAACGCGTAGCGTGGAAATCTTCTTGGGAAGCGAGTCACGCGGCCTTTAATAGAGGCAAGAACCGCTACTGCAATATCGTCGCATATGACCACAGTCGAGTTGTGTTGAAATCCGTGAGAGACATCGCTGGATCAGACTACATCAATGCTAATTATGTTGATGGCTACAACTCTCCAGCCAAGTACATTGCAACTCAAGGTCCTTTGAAGCACACTGTGAACGATTTCTGGAGAATGGTTTGGGAGAAGAATGTAAAGACCATTGTGATGATCGAAACACACGACAACAACAAAGATCCTGACAGTGAGAAATATTGGCAAGAAACAGAACCCACTGAGTATGGTCACGTGACAGTGTCACACCTCAGTAGTTGTGCCATGACGGACTGGGTCGTCAGGGAATTTATCGTTTGGTCAACAGAAACTGATTGTACAGAAAAGCGGGATGTGTTTCAATATCACTTCACTAATTGGCCTGATCACGGGGTGCCATTTGACACTTCATCGTTCTTGATGTTCTATCACAAACTGAGGGGCGCTTTGTCTGTTGATCCAGGACCTGTTCTAGTTCACTGCAGCGCTGGCGTTGGAAGAACAGGTTGCTTCATCGCCATCGATTCTTTGATGGAACAGATGGAATCCGAAGAGCTGGTGGACGTGTATGGGTTTGTTACCAAGATGAGAAATCAAAGAAATTTTATGGTGCAAACTCAGGAGCAGTACTGGTTCATCCATGATGTTCTCAGAGACTCATGCATCTGCGGTGAGACTACCATCTCATCAAACGAACTGGGCAGCGGTCTGCTTTGCGTGTCTGGAGTTGAGCCCGAGGTTGTTGAACAAAGAACAGCGGAGTTTGAGAATCTTCAAGTCTTTCCAGTAGATTATCTGATGTTTAAGGATGCAATGGAGCATTGCAACTTGCGAAAGAACCGCTGTCAGGAGACATTGCCGTTTGACCACAACAGAGTCCGACTCAGTGTCATGCCGGGTGAACTTGGTTCAGATTACATCAACGCAAGCTTCATTGATAGTTACAACGAGTGTCAAATATATATCGCCACTCAAGCACCAATGGAAAACACCGTCGGCGACTTCTGGCGCATGATCTGGGAGCAGCGGTCTACCATTGTTGTCATGCTCGACGATTCAGAAGGCACTGAGTCGGAACAAAGCACACGATATTGGCCAGATGAAAGTTGCAATTCATATGGAAGCATATACGTATCCAAGATTGACGAGGAAAGACTCGAAGATCTTACGCAGAGAGTGTTCAAACTTTGGCAGCGAGGGAGCGCTGAAAGTCGGCTGTTATATCATTTTCAATACCGTCGTTGGCTGGGGAACACGCTCCCTCGTGCCCAGTCGTTTGTGTACCTTCATCAACAAGTCCACAAGATGCGGTCTGGGAATGAGCGCGAGGGCTCCATAGTTGTCCATTGCAGTAACGGTGATGGCCGAACTGGAGTATTTCTCGCCCTGTCTTTGAGTATCGAACGATTGGAGACCGAGGACAGCGTCGACATTTTCCAGACTCTTAGATGGTTAAGGTCACAGAGAGCGAGACTGGTTACTAGTTTGGAACAGTACAATTACTGCTATGATCTGATCAAGAGTTACTTGGCCTGGAGAACCATCAATACAATCCAGAACGATTACGTTTGAATGAAAGACAACTTGAGTTTCCAGTAATGAAAGTCGCTACGTTGTTGGTAAAATCAAACAAAAGCAAGGTGGACTTGGTTTATCGGCTatacaccttattccaaaatggtggccaatgaattattcttttgtttgcatgtttatgagccctcgttgcctcattttcacttcaaaattcttttgtttgttatacatgttgacgaggcaaagaggactaattaacatgcaaacgaaagaataatttattggccgccattttggaatacggTGTGTTACTGTACACAAGCGCACGACTGTATTACCCAGGCCGTGACAGACACGAATAGCTGTTCCGGCATGTGCGACACCAGCTTTGGCAGTAACGGATATTCCACAACTATACCGTGCTGGTTTATTCTCTTTTTGGAATGTCACGCAATGTTTGTCCTGTTGCGTGAATCTCCAAAGGGAAGCAGCAAAGGAGATCAGAACTGATGCAACCCAACAAAGCTAAAAACACTGTACATATCTACCACTGGCCAGGTGATACAGTCGTGCGCATGAGCAAGACTATAGCCACGCCATTTAGGTTGTTGTCCTCGTGTGTACACTCTGCTTTAGTTGAATTTACCAATATTTGGCCAGTCATGGACCAGCAAAATGCTAACATAGCGACCCGAAACATGTAGCTTATTATTATAGGAATATATAATAAAGCTGTTAATGATTATCTTTTAAAGTAATACTGGCAAAATAGAATGCTTCAACTACCGGTTTAAAGAGAGTAATTTTCTCGTTTAGCTCAATGCATACGTGTACAAAAAGAGGAAATAATCTTTGCGTTAGCTTTAAAGACTAAGATTTGTGTAACGAAGTATGGTTAAATTTGTCGCGCAAAAGTCTTTCAGGTGGTGAATTAATTTAGCTACAGTCTCTGTCTTAATTCTTAAAACAGACTGAGGACATGTGTCAAACGTCATATGAGACAAATTGTGCTTCTGTTACTGGTAGCTATTAGAAGTTACCTCTGACCACATTGTGTGGTGGGCGCAGTGAGTTAAATCGTTATGATGTCTAGAAAGTGAATCAAATGCTTTGCTTTGGGCTGGAATTAGTGAAAGGTAATTTTTATTTAGGAAGTGATTTTGGGTTTCGTTAGAGGAGAGAGACTATCGCAGTTCGTAACCAGTAAAATAAAAGCGTTATCCGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A4IFW2	Receptor-type tyrosine-protein phosphatase F OS=Danio rerio OX=7955 GN=ptprf PE=2 SV=1
A7MBJ4	Receptor-type tyrosine-protein phosphatase F OS=Bos taurus OX=9913 GN=PTPRF PE=2 SV=1
B0V2N1	Receptor-type tyrosine-protein phosphatase S OS=Mus musculus OX=10090 GN=Ptprs PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000057 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF00102 all species →	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR016130 all species →	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR000242 all species →	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR050713 all species →	Family	Receptor-type Tyrosine-protein Phosphatases/Ushers	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR000387 all species →	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR003595 all species →	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46957 all species →	CYTOKINE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan
GO:0004725 all species →	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05695	PTPRF, LAR; receptor-type tyrosine-protein phosphatase F	EC:3.1.3.48	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.