Gene detail

Detailed information of amic_s0085.g12.t1 in Acropora microphthalma

Genomic Location: sc0000085_pilon:134351...145565
NR annotation: XP_015755896.1, PREDICTED: nucleoredoxin-like [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0085.g12.t1

TAAATCATTACTGTGCAATACTTAGCAATTGTCGAGTCCTCTGGTGCAAAATACGAAGTTGGATGATGGAGGAAACCTTCTTTCAAAGACTCTTGGGAGACAAGCTGTTGGGAAAAGATGGAGTGGTAAAGACCTCGAGTGTTGGCGGCGAAGGTGTGACTATTGGTTTGTACTTTTCGGCACATTGGTGTCCGCCTTGTCGGGGATTTACACCGAAATTGGCCAAGTTTTACGAGGAATACAACAAAAAGCAAGGAGACAAGAAATTCGAAATCGTGTTCGTGAGTTCAGACAAGAATGAGGGAGAATACAACAGCTACTACGGAGAAATGCCATGGCTAGCCTTGCCGTTTCGCGATCGTTCGAGAAAGGACCATCTTTCACAAAAGTTCAAGGTGTCTGGTATCCCTACGTTGGTTCTTTTAGATGGGAAAGATGGCAAAGAAATCACCAAGGAAGGTCGTGGAAACATACTGGATGATCCAAAGGGAAACAACTTCCCATGGAAGCCTAAAACAGTTTTTGAAGTACTTAAAGATGTGACACTAATCAACAATCAGAATGAGAAAAAAACCATCGATGAAGTGAAGGGAAAGGTCCTGGGTCTGTACTTTTCAGCTCATTGGTGCCCACCCTGCCGCAGTTTTACACCACAGCTTGTACAAGCTTACAAAACACTTAAGGAAAGTGACCAGGCTTTTGAGATCATTTTTCTGACTTCAGATCGTTCGGAGGATGGTTTCAATGAGTATTTCAAGGAAATGCCATGGCTTGCTGTTCCCTATGGTAATGAAAGAGTAAAGGAGTTGTCTGGACTGTTTTCAGTTCAGGGCATCCCTACATTGATCTTATTGGATGAAAAACATGAGATCATTACTTTGAATGGCCGTAGTTGTGTTTCCCATGATCCAACTGGAAAGGAATTTCCATGGAAACTCAAACCTTTGAACTACCTCAATGAAATGACAGTGAACACTGTTAATGAAGAACCTTGTCTTATTTATTTTACAGATGGTGAAGAGTCAACAATCAAGGGTGCTAAAGAAATTATTGGACCAGTTGCTGAACATATGCTTGCCAAGGAACAGTCACCTGTGACCTTTTTCTATGCTGGTTTGGACGATACAGCTGATAGCTTGCGTGACTTCATTTGTCTTCCAGATGATGACAATTTAATTGTCATACTGGACATTCCATCCCAGAAAGTATATGTTGCTGATGACGATGTTTTGACTAGGGAGGGCGTGGAGAAATTTGTCAAAGATTTTTCAGCTGGTAAACTTGTAGGGAAATCGCTTAAGGGCTAGAGGAAAAATTGGCAGTGAAATGTTCACCTTGAACAATCATCTATACTAAGCTCTTTGTATGCAGCATTGGAAAAATCATTGACTGATAGCAGTTGAGTGCTAATACTTTGTTCGTGATGTCAAGTTTACTCAAAAGTGGGAGTTCTCTACTCAATGGTAATTTTATGTTTGTTTGCTTTTGTTTATGCAGTGTACTGTTAATTATTTCAAAACTATCTGTAATGGTAATCATGCAGTGATCATTCCCTGTCAAGTTTTAGACTTAAGTAATTTGAAAACCACAATTATATAAGTTTCACTGAAGATATATGTGACCAAGTTTTTATGGTAGCTGAAATACTAAGCTTTTTTAAATGTAACCTTATATACTTTACATCACCACAGTTCTAGATCAGACAAACTCTAAGGTTAGGGTTAGGGTTAGAATACCTACATACAGAAGCAAACATTTACATATTGCATTGTAGTATACTGTAAGTCACAATATCTATGAAAATCATGTAAAATCATCAATAATGATCACCACTCAGGCGTTTACAGAAAACAATAATGATGAGAACGGGTCTGTTTTATTGAAAGGCTTTGGAAAGATATATGCGTAAAGACAGCTAGGGAAAAACACTGTTACCTCAAGTCCTTCAATGTAAAAGTGCAAATGAGTGTCTTGGTCAAATAATTGGAAGTTTCTGGCATGTATAAAAAGTAGCTATGTAATGGGTGCCTTTGCTACCTCTGAACATTGAAAAACTACAACCAAAATTAAATACATACCAACAGTAAAGGAGTCACCTAAGCACGCGTCCTTTCAATAGTTGTCTTTTAGAAGATTTTCTCATGGGCAATAGAGTGGGATTTTTGGGTCATCCATTTAAAAGGGATACTGAAACTCCTGCTTTACTTGTGAGAATGTGTGATTTGTATTATCCAGATAATGAGTAAAAAATAACCTAGAAAGTGGAACACAAGAGAATAATTGTTTACATAATTACGCCAACAAAGAAAGAACAGTGTTTTTGATCCTAAAAGAACATGATCTTTGATTCACATCATTGCTTTTTAAAGTAGTACATTTTTTTAGTCTGAAAACCCAGTGTAAGAGTAAGTTAACTTAATATTATTACTGTAAAATAGTGGTTTTGTGCTTGGTGCCACCATTAGCATCAAGTGTCCATTATCTATTAAAGTACTTTTCAATGTAAATGCCCAAGTGACTCAAACTTCAGTTTGTTTTCAATAAAATGCATGTGTAACT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q503L9	Nucleoredoxin OS=Danio rerio OX=7955 GN=nxn PE=2 SV=1
Q6GM16	Nucleoredoxin OS=Xenopus laevis OX=8355 GN=nxn PE=2 SV=1
P97346	Nucleoredoxin OS=Mus musculus OX=10090 GN=Nxn PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002570 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13905 all species →	Thioredoxin_8	Thioredoxin-like	Domain	Interproscan
PF13848 all species →	Thioredoxin_6	Thioredoxin-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012336 all species →	Domain	Thioredoxin-like fold	Interproscan
IPR013766 all species →	Domain	Thioredoxin domain	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR045870 all species →	Domain	TryX and NRX, thioredoxin domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46472 all species →	NUCLEOREDOXIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004791 all species →	Molecular Function	thioredoxin-disulfide reductase (NADPH) activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0030178 all species →	Biological Process	negative regulation of Wnt signaling pathway	Interproscan
GO:0031397 all species →	Biological Process	negative regulation of protein ubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17609	NXN; nucleoredoxin	EC:1.8.1.8	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.