Gene detail

Detailed information of amic_s0085.g27.t2 in Acropora microphthalma

Genomic Location: sc0000085_pilon:317416...325985
NR annotation: XP_029188708.2, LOW QUALITY PROTEIN: SH2B adapter protein 2-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0085.g27.t2

GTGATGTAGTGTGGTGTACGGTCATTTAGCAAGTCTGTTCCGGAGTGACTGTCCGTATTTCGAGTGTTCCCTTCTCAAAATGGTCAGGTAACATTGTGTCTGCCTTGATGGCTTTCTTCAATGGTGAAGTTGGGACAAATTTTCAAGGAGGCCGCTGGGAAGAATTTTGCAAGGACAGAGCCGAAGTAGCTGCGAAGCAATTCGCCAACGAATTCCTACAATTTTTGGGAGACAATCCTGTTTTCGATGTTTCAGGAGCTTCGACGACTTTTTCCAAGCGCTTTGTAGAGTACTTCTTGCAGACCTTTGACAATGAAGTGCATAAAAACGGCTTCATGGGTTTTGATCCTCCAGAGTCTCCCACGGATCTTTTCGGACCGGACGATTGGGGGTCTAGCGTTCACCTCACCGGAAACTTCAGACCGATCGAAAAGAAAACAAATGAGTCCAGCTTCAAGTTTTTTGGAAAGCTCAAGGATGTGAAAGGTTTTTTTAAGCGAAACGTGAATGAGGAATCTCCAGGGTCTGGGAAACATGCGGAAACAAAGAAAGCGATTGAGGACAAGCCGACGACATCTCAGGAAACGAAGCAGTTGACAACTACTATCAAGAGGGAAGGAGTCATGAATTTTCTAATGAACTTAGACAGCGGAGTGAATACAGAAGACTTTTTCTGGCAGAAGTGTCGAATGGTTCTGTTTAAAGCTCCTGGAGGATACATGCTTGAGTTCTTCACGCCTCCAAAGTCTACCAAAGCAAAGGCAGGAATATTTTGCTTCCTTATTCACGAAGCTAGACAAGCCACAGAGTTAGAACTTCCTGGAGGTCAGAATGTCTTCGTTATCAAGGCAGTAAACAAAAAAGAATACATGTTGGCTGCTAACTACAAAGAAGAAATGGATGAGTGGCTGGCAGAGATTAAGAAATGTATGGAGGAAGATCAGGGGTCATCAGGTCAAAGTGGGATTGGTTCTGGTTCTGAAGAGAGAGGTGCAGTTGCAGCATTTCCTCCTGCATCAGGTGCCACTCTGGATCCCATTACAACACCTGTGACAAATCTAACAACAGCAAGTTTGAAACTCAGAAACAACCAACCTCTTAGAGTTAGACTGGACAGCTGCCCAGTTGATAAAAAACCTGCAGAGGTCATGTCAAATTTAGCGAAGCGAAGAAATGTCTATGCTCCATCAACATTACAACTACAAAAGCGAGTTTCAGGATCCCTTAGTCTCCAACATGGACCACAGACACCAACTTATCACGATGATGGAATTCCCAGTCGTCCTCCTCCGGAGCTTCCACCGCGTTCACCAACCAATAGTGACTCACCTGGGCCCGCACCACCCTCAAATGAACCAGATTTGTTGCAGCAAATCTCTGCGGGGGTGGAATCCCAGACAAGTAGTGAAGTTGAAAATCATCCACTTGCAAACTACCCATGGTTCCATGGAACTTTGCCCAGGATTGACGCATCGCACTTGGTCGCACAGGGTGGCCAGCAATGGCATGGAATTTTCCTTATAAGGCAAAGCGAAACAAGACGAGGAGAATATGTTTTAACATTCAATTACCAGGGAAGAGCAAAGCACCTCAGGCTGGCACTTAATGTGGAGGGTCAATGCCGTGTTCAACATCTATGGTTTCAAAGCATCTTTGAGATGTTGGAGCATTTCCGAGCCAATCCAATCCCTCTTGAGAGTGGTGGGCCCTCCGATGTGATGTTGACAAATTTTGTGGTCTTTGTGAACTCTGTCAGTAGCCCTACGTTACCCAATAACTCAATGCAGCGAGCTAATTCACCCAATGTTAGGGAGGGCCTGCGACGGTCACACAGCCTACAGACACATAGGATGACCAGACCAGCGGTTATTCAAGGAGGTTCAGTAAGGATCACAACTAATGCTGCAACAAATGGACACGAGAGAGCAGTAGAAAACCAATATGCCTTTGTATAAAGTACTATAAAATTATTAAAAAAATTTCATTGAAAAAATAGACTAGAATGCTTCAATTTAATGCTttattttattgttgttattatttttgtattatcataattaATTTTTCAATTAAAGGGGAGAtatgtccagtgtcgcacttgatttatagatgcaggtcattctgatctcactaagcatcactgtgccccgtcattaacatcaccaaaacttctggtgaaaaaaaaattaatatcgacaacaaaggtcataaagtgtcctcctaactgtgacgatttaaagagggccataaacagtgaccctggtctgaacctaaaataacccaaacacaaatgctaacccaaaaagtggtttatgcttagatttagtgggacactttgtgagttttacgtacagtaaattgagcatgcatctaattaGTTGTTGCTACAGTGTATTAAATTTTATGCTGTTATTAAAAGATTTAACAAGGACTATCTTTGTTGGGTTTTCAACAGCTGTGTTTTCTTTTCAGTACTGATCGATGATACACAATAACATTAAACTACTGGAATATTTCATGTTGCACCTTAATTTATGCCCATGTTGAAATCTTTGGATTGGTGAAAGGTGATTTTGCATCAAAACAAAGAAAAAACATTGTCCATAATTATCTTCAAAAAGCACATGTATCATGTTAAAATTCTAGTGTCAACGAATGAGTACAACATGAAAGCTTGGGTGGGAAATGGGGAATAATGTTGATGTTTTTGCCTTTAGGTATTTACTTTCAAAGAAGCCTAAAATAGGTTTTATCAAAGAGCACTTCTTAGTGTGTTGTTGTCAGTTTGAATTTTTTTTAATGATCTGAGTATTGTTTTCCATTACAATACCATAAATAATTATAATAGTTCTTATGTAAAAACCCAATTATTCAATGAGTATGATATTCATATAAATTTCATTTGTCAATACTAGGTAAGAAGTATATTAAAATAGTATTTTTTGAAGACAAAAAGTCATGTCAGGGAAAGTCATTAATTTTGTGATACAGTAATTTTTTACATGAAAATAAGTCTTCTAAATATAAGCAACACAGCTGAGACGATCAACTTTTCTTCTTTCTGAAATTGCAACCTGTAAAATGCACAATTTACCAACCATTTGCATATTCTTTATATTTTTATTTTCGTCATCATCCTGTATTATTTTGTCTTTTTTGTTGTCATTGTTGGATGTAATTTTTATCAATAATTATTGCAAGAGGCTAACCTATTTTCTTAGGAATAAGAATACAAAATTGAAAACAATTATTGATTCTTTAGCGATTTGGGTGTTAAATGGATATAAAGGGGAGGAAAAATAGTTTTTTTGGGGGCCAATTTGTATACGGTTGTTTCTCATTTTATTGAAAACATTAATGGTCCTGTTGGTGTCATGCATATTTTAATGCTAGAGCACTTAAGTGTCATTTTGAAGCACTTTCATTTGGGTATTTCTGTCCTATCATGTGAAAAAATATTGGATGGGGAAAAGTGACAATGCAGCAAATTGTTGTTATTACTGCATATTGCACCAGCCTATTGCATGAGAAAAACTCCTTAAATACTGTGCTTGATTGTCAAGATCAAACAAGATGTTCATTTGCTGAAAATATAACCAAAgtttgttttatgtttctttgtattgtcttgtttgtCACTCAGCGGTTTTTGTCTGCTCACCCATGAAGGTGAAGCCAGCTAGGAAACAGAAACTTGAGGATCAAACTATGTGGAAATGACAATGACAGCAGTCTAAACTTTCATTTTGACCCACAACTTCACCCATGATCTTTTGCTGTTCACATGTATTATGTAATTTCTCTGTTGACATCTATTACGTTAACATTGGGGTTGCATTGGTTTTGGCCTACACGTCTGAAGTCTGAAGATGTGGTGCTGGGAAAGCTCTCTCCACAGGACAAAAAAATGTAAATCTTATAAAAAAAAAAAAAGCTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JID9	SH2B adapter protein 2 OS=Mus musculus OX=10090 GN=Sh2b2 PE=1 SV=2
Q9Z200	SH2B adapter protein 2 OS=Rattus norvegicus OX=10116 GN=Sh2b2 PE=1 SV=1
Q62985	SH2B adapter protein 1 OS=Rattus norvegicus OX=10116 GN=Sh2b1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005936 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08916 all species →	Phe_ZIP	Phenylalanine zipper	Domain	Interproscan
PF00017 all species →	SH2	SH2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000980 all species →	Domain	SH2 domain	Interproscan
IPR030523 all species →	Family	SH2B adapter protein	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR036290 all species →	Homologous_superfamily	Phenylalanine zipper superfamily	Interproscan
IPR015012 all species →	Domain	Phenylalanine zipper	Interproscan
IPR036860 all species →	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR035057 all species →	Domain	SH2B1, SH2 domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10872 all species →	SH2B ADAPTER PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005068 all species →	Molecular Function	transmembrane receptor protein tyrosine kinase adaptor activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0035591 all species →	Molecular Function	signaling adaptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0085.g27.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.