Gene detail

Detailed information of amic_s0085.g3.t1 in Acropora microphthalma

Genomic Location: sc0000085_pilon:21173...35375
NR annotation: XP_029188756.2, ATP-dependent RNA helicase DDX55-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0085.g3.t1

TAATTAATGCTTTGACCGCCGACTCAGATCTGTTGACAAGATGGCGGCGATAGCAGCAGCAGCGTGGAGTGAGTTGAAGCCGCGATTGTCCGATTCCGTGTTGAAGGTTATCGACGAATTCGGTTTCCAAACGATGACACCGGTACAGACAGCAACAATTCCTCTGTTCATGTCGAACAAAGATGTCGCAGTGGAGGCAGTGACAGGATCTGGAAAAACCCTAGCATTTCTGGTTCCCATTTTAGAAATTCTGCTTAAGAGGGAAGAGAAGCTGAAGAAGCATGAAGTTGGTGCAATAATCATATCTCCAACAAGAGAATTGGCCAAACAGATTGATGAAGTCTTGCAAAAGTTTACTGAAGATCACTCACATTTAAGGCAACAGCTCTTGATTGGAGGAGGGGATCCTTTGGAAGACATCCAAAAGTTCAAATCAGAAGGAGGCCACATACTTATTGCTACCCCTGGGCGCCTAGAGGATTTGCTTTTTCGAAAAAAGGATGGACTAGACCTTGGAGTACATGTTAAATCCTTGGAAGTCTTGGTCTTGGATGAGGCAGACAGATTACTGGACATGGGGTTTGAAGTCAGTATCAATACCATTTTGGGCTTTCTTCCAAAGCAGAGAAGAACTGGCCTCTTCTCGGCCACTCAAACTGAAGAAGTAGAAGCTCTAGTCAGAGCTGGGCTGCGGAATCCTGTTAGAGTTGTAGTACGAGAGAAAGCTTCCAAATCTAAGTCAGAACAAAGGACTCCATCAACACTGAAAAATTTCTACACAATTTGTGAAAGTGAGAAAAAGTTTTCAACGCTGGTTACCTTCTTGCAAGCAAGAGAAACCAGCAAGAACATGGTCTTCTTCAGCACGTGTTCCTGCGTCAATTATTTTGCAAAGGCCCTTGAAATGCTTTTAACAAATATGACTGTATTGTCTATCCATGGAAAAATGAGGTCGAAACGACGCAAAGTTTTCGACTCCTTTCGAAAGCTAACAAGTGGTGTTCTCGTCTGCACAGATGTTATGGCTCGCGGAGTGGACATTCCTGAGGTAGACTGGGTCATACAATTCGATCCACCGAGTAGTGCAAATGCCTTTGTACATCGTTGCGGAAGAACGGCAAGAATTGGGAATCAAGGGAACGCTTTGCTGTTTCTACTTCCAGAGGAGGAATCTTACGTGAATTTTATATCCATAAACCAAAAGGTCCCACTGCAGTTGTTTGAAATGGACGAAACCGTCACAGATATTGTTCCTAGTCTAAGAAAAATGGCGACAAACAACAGAGATATTTATGAGAAAGGAATGAAAGCATTGGTTTCGTTTGTGCAGTTTTATAGAAAACACGAGTGCAGCCTGATCTTCCGAACATCTGATCTAAACCTCGGAAAGCTAGCCACAGGTTTTGGCCTCATAAAGATGCCCGTGATGCCAGAACTGAAGGACAAAACAGTGGACTTTGACCCAGTTGACATCGATGTTGAAAACATTCGTTACAAAAACAAAACTCGCGagaaagaaagaaagaggaaactacaagaacgaaaAGCGTCGTCTGAAGATGTTACTCAGCAAGCAAACGCAAAGAAGAAGAAGACGCAGGAACGTAATTCAGTTCCGTGGTCCAAAAATAAGGAACGGAAGACAAACAGAGAAAAACGGAAAGCGCGTAGAGAATTTATGAAGAAACAACGCCAACAACATTTGCAAGAGCGGAAAGAACTTGAAGAGCTAGCACGTGAAGCCAGCTTACTTAAAAAATTTAGGTCAGGAAAAATAACTAAAGTGGAATTTGATTCCAGAGTTCGAATTGAAGATCAAGTAGATGATTAATCATCTGTTATCGCAAAGTGCAAATCATCTAAGTTCTTTTCTAATTTCGAAAGCAAGATATTAAGTTTCGGAGCGTCAGCTTTTTCTTTTTTTTTGAGACGGTCAGCTCGTTCAGGACAACTTAATATTAGTTCTGCTTCACATCTCCTAAATTTGATGGAAAGAAAGACTTTTCTTTCCACACAATTTAATACTCCATTCGAGCTCGCAGACCTTTTCGGTATCCCTAGCTCTGTTTAATGCGAACGTCTTGGGGCAAGTGCTCGTAGCTCAGTTAACAATGATCATTTGTGGAGTAATCCTGTAGCTCCAATGACCTAAGGTCGCTTTTGTCATTGGTGTATACTTgtattgttcgtgttttattctctgttgttccattctccgatcacagaccgtgtctggaaaTTTAAAGCTTCTCTGCATTGGTGAAATGCGGAGGCGCACAATAAAAGGGGCGGTGTCTAAGCAAACCAGGCCCCAGTTTTTGAAAGCCCGGCTCATAGTTCACTATCCCTTAAATGAGGTCTTAAATGATACTATCACAGCCTGCGAGCAGTCTGTTTGCGGACTAGGTCCCATCCCGACCTAGTCCCTCAGAGAGCCTACTCGCAGGCTATGGTATCGAAACCTATTGCGTTTTTCAGTGTATAGAACTTATCGAGTCGATTCTTCTACCAACCTTGTTAAGAACTTTGACCGTCTAAAATCGAGAATGTGGACACACCTAGAGCCTTTAAGTTAAGAGACCCTTGAAGTAATTTCACCGCAAAGGATTTTGCAAAGTCATTCCTATGCTAAAGATATTCAATCAAATTAAAAATTATCTCTATCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8JHJ2	ATP-dependent RNA helicase DDX55 OS=Danio rerio OX=7955 GN=ddx55 PE=2 SV=2
Q6ZPL9	ATP-dependent RNA helicase DDX55 OS=Mus musculus OX=10090 GN=Ddx55 PE=1 SV=2
Q6AZV7	ATP-dependent RNA helicase DDX55 OS=Xenopus laevis OX=8355 GN=ddx55 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003987 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF13959 all species →	DUF4217	Domain of unknown function (DUF4217)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR000629 all species →	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR025313 all species →	Domain	Domain of unknown function DUF4217	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24031 all species →	RNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14809	DDX55, SPB4; ATP-dependent RNA helicase DDX55/SPB4	EC:5.6.2.7	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.