Gene detail

Detailed information of amic_s0085.g6.t1 in Acropora microphthalma

Genomic Location: sc0000085_pilon:64122...68565
NR annotation: XP_029188792.1, 60S ribosomal protein L6-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9C9C6	Large ribosomal subunit protein eL6y OS=Arabidopsis thaliana OX=3702 GN=RPL6B PE=2 SV=1
Q9C9C5	Large ribosomal subunit protein eL6x OS=Arabidopsis thaliana OX=3702 GN=RPL6C PE=2 SV=1
P34091	Large ribosomal subunit protein eL6 OS=Mesembryanthemum crystallinum OX=3544 GN=RPL6 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007850 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01159 all species →	Ribosomal_L6e	Ribosomal protein L6e	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008991 all species →	Homologous_superfamily	Translation protein SH3-like domain superfamily	Interproscan
IPR000915 all species →	Family	Large ribosomal subunit protein eL6	Interproscan
IPR014722 all species →	Homologous_superfamily	Large ribosomal subunit protein uL2, domain 2	Interproscan
IPR041997 all species →	Domain	Large ribosomal subunit protein eL6, KOW domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10715 all species →	60S RIBOSOMAL PROTEIN L6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0000027 all species →	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0002181 all species →	Biological Process	cytoplasmic translation	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0022625 all species →	Cellular Component	cytosolic large ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02934	RP-L6e, RPL6; large subunit ribosomal protein L6e	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.