Gene detail

Detailed information of amic_s0085.g68.t1 in Acropora microphthalma

Genomic Location: sc0000085_pilon:825000...845716
NR annotation: XP_044174099.1, protein HIRA-like isoform X3 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0085.g68.t1

ATGGATGTCTCATGGAGTGAATCAGGATTTCAGCTGTTGGTTTGCTCCTGGGATGGAACAATAGCTTATGCAGATTTCACAACTGAGGAACTTGGCAGGCCAATGTCTGAGGAAGAGAAGGAAAAATTCCACAAACAAGTTTATGGTATCAGCATAAGCAGCAGCAAGTCAAACTTTGCCAGTGCAATTATTGAAAATCCCGAGATGCTCAAAATCCAACAACGACATGTTATGAAACAACAGACTCTTGCCAGTACAAATAAACCCAATGCACAACCTCCTCCTCTCGTATCTGCTACAGGGACACCAACAAAACAAGAACCTACAAATGGAAATCTAAGTAGAAGTCCATCAAATGCAAGTTACTTAACCAGTCCGGTGGCAAAAAGCCCGTTGGATCCTGATAATGTCCGACAAAAGCAAATAGAAACGAGAACTAAAGATGGTCGCCGTAGGATCACTCCTCTGTTGGTGTCCTCCATGGAAGTAAGTGATTCGCCTATGCCGTTTGGAGTTTCTTCAGCAACAGTTACCACATCAGCAAGTTCTAACATTTCTCAGACAGCTTCATCCATTCCAACAACTCAGAATTTGGTGGCACTGGATTCAAGAATCGGTGAAAATGCCACCACTGGATTCACGAGCAAAAGTAGTGTGGATAAAGAGACCGAGAAGATGGAGATGGCATTTGTGAAGCCGGTCTCCGCAACAACAATGAAGCCCATGATGTCATCAGTTAAGTCGGCATCCAGTACCTCTGTGACAACTTCGGCGGCTACAACTACAAGCACAACGATTGCTGTAAAGAGAAAACCAGACACTCATGCGGCATCGCACTCAAAAAGAGCAAGGAAAGATGGAAGCTCATCTGGCAGAAGTTCAAGTAGTTCTAGCGCTAGTAAACAACGTGAAGATAGAACGGATCTGGAGGAAGCTTCTGACGCTTCTTTACATGTTCGGCATTCCGTGGCTATTCCTTATCCAGTTCCTCAGAAGAACCTCTCAGTTCAGATAAAAGGGTCTGGTGGTGAAGGAGCCTTGTCACTGGACTTAGACAACAATTTAGCAAGTCAAGGGCCCAGAGTGCATGTCTTAAAGTGCTCTACCGCTGGAAAGCCCCTCTGGGAAACTGTACTAATGAGCCCCGGTATTGCTTTGGCTGGAAATAGACAAGTGATATGCGTAGCCTGTGAAAACAGAAGTATTAACCTTTTTTCTTCCGCCGGCAGAAAACTGCTGTCTTCCATTGTGCTTGATTCACCGGCCTCCATCTTGCAGTGCAGCCGCCATTACGTCATGGTTGTAACTTCTGCTGGAGGGGTGTACATTTGGGACACGAAGCGTCTAAAAGCAGTGCTTAAAAATGAACCAGTTGTTCCCCTCTTATCAGGTCCTGATATTACCATCACACGAGCCTCGATTTCAGAACCAGGATTTCCCATAATCACTCTCTCCAATCATGCTTCTTATTCCTACGACACATCCATAGGGGCCTGGCTCCAATTGATTCATGCTGATGACCTGTTGGCTGTTAACTCCGACCACCAATCCGTTACACCTTCCCAAGATCTCTTGCAGGCCCAGGGCCCACTAGCTCAGCTCCAGGGACAAAGTTCCAGATTCGGACGTCAGTCTACAAGACTTTTTCGTTCCAATCCTGGCCGACAACAATCCTCTACAGCTGTTTATTTGGAGAACCAGTTATCATCTTGCGTGGCTCTTGGTTCTGCGAAAGAGTACTACCATTGGCTAACCACCTACATACGCTATCTTTCTCAAGCTGGTTTTGAGGCTCGATTGCGTGAAGTTTGTGAGGAATTACTCGGCCCACCCCACAGAACGATCAGTCATCAGGACAAAACGTCCAGCTGGAATCCCTCTGTACTGGGATATCAGAAGAGAAGTCTCTTACGCCAACTTCTACCTCATATAGGAACAAACATTCGTCTGCAGAGACTTTTCACAGAGTTCAAGGAACAGCTGGATGCGCTTAATGTGCGGTAA

Transcript

amic_s0085.g68.t1

TAGAGAGATACGTATTCGGTACAATATATGTCCCCATACATCACCTACCTACCAACTTCATAATAATTCCCCATACATAACGTACCTACCAACAAAAGAAATCCATAATGGCGGATTGTGCACTGTGCACTCCTGGTGCAGTCATTTGAATTCAATTTTTCTCCTTAAGTTTTGCTAAAATGAGATTGCTAAAGCCTAGCTGGGTTTCACACGAAGGAAGACCTCTGTTTTCCATTGACATTCACCCTGATGGCTCTCGCTTTGCTATTGGTGGTCAAGGAGATGACTCCGGCAAGGTTACTATCTGGAACATGGCACCTGTAAAAAATGAGGAAGATGAAATGAATGAAAATGTGCCAAAGTTGTTGTGTCAAATGGATAACCATCTTGCTTGTGTTAACTGTGTACGCTGGTCCTGTGGTGGTAAATATCTTGCTACTGGTGGAGATGACAAACTCATTATGATCTGGCAAATGGCAAGGTATTTGGCTCCCACGGCAGCATTTGGAGGAAACAGTGGCAAGTTAAATGTTGAGCAGTGGAGATGTGTGTACACCTTACGAGGGCACACAGGAGATGTGTTAGATCTTGCTTGGTCACCGGATGACAGTTTCTTGGCTTCTGGAAGTGTTGACAACACAATCACAGTATGGAATGCTCAACGATTTCCAGATATTGTGACTGTTTTAAAGGGACATAGTGGGTTGGTAAAAGGAGTCACATGGGACCCAGTTGGGAAATACCTGGCCTCTCAATCAGATGATAAAACTTTAAGGGTGTGGCGTACATCAGATTGGCAGCAAGAGACTTTTGTCTCAGAGCCATTTGCTGATTGCAGTGGAACAACTCATGTTCTGCGGCTTAGTTGGTCTCCAGATGGTCACTACGTTGTATCAGCACATGCCATGAATAATTCTGGGCCTGTAGCTAAGATCCTGGAGCGGGATGGCTGGAAGATGAAAATGGATTTTGTGGGACATAGAAAAGCTGTCACATGTGTGCGATTTAACCCCAAGCTGTTTGTAAACAAATTGAGTGAGGATTTAGCCAGGCTCAAGCAATATTCCTGTTGTGCCATTGGAAGCAGGGACAGATCTCTTTCTGTTTGGCTAACATCTCTAAAGAGGCCTCTGGTTGTGGTACATGACTTGTTCAATCACTCTATCATGGATGTCTCATGGAGTGAATCAGGATTTCAGCTGTTGGTTTGCTCCTGGGATGGAACAATAGCTTATGCAGATTTCACAACTGAGGAACTTGGCAGGCCAATGTCTGAGGAAGAGAAGGAAAAATTCCACAAACAAGTTTATGGTATCAGCATAAGCAGCAGCAAGTCAAACTTTGCCAGTGCAATTATTGAAAATCCCGAGATGCTCAAAATCCAACAACGACATGTTATGAAACAACAGACTCTTGCCAGTACAAATAAACCCAATGCACAACCTCCTCCTCTCGTATCTGCTACAGGGACACCAACAAAACAAGAACCTACAAATGGAAATCTAAGTAGAAGTCCATCAAATGCAAGTTACTTAACCAGTCCGGTGGCAAAAAGCCCGTTGGATCCTGATAATGTCCGACAAAAGCAAATAGAAACGAGAACTAAAGATGGTCGCCGTAGGATCACTCCTCTGTTGGTGTCCTCCATGGAAGTAAGTGATTCGCCTATGCCGTTTGGAGTTTCTTCAGCAACAGTTACCACATCAGCAAGTTCTAACATTTCTCAGACAGCTTCATCCATTCCAACAACTCAGAATTTGGTGGCACTGGATTCAAGAATCGGTGAAAATGCCACCACTGGATTCACGAGCAAAAGTAGTGTGGATAAAGAGACCGAGAAGATGGAGATGGCATTTGTGAAGCCGGTCTCCGCAACAACAATGAAGCCCATGATGTCATCAGTTAAGTCGGCATCCAGTACCTCTGTGACAACTTCGGCGGCTACAACTACAAGCACAACGATTGCTGTAAAGAGAAAACCAGACACTCATGCGGCATCGCACTCAAAAAGAGCAAGGAAAGATGGAAGCTCATCTGGCAGAAGTTCAAGTAGTTCTAGCGCTAGTAAACAACGTGAAGATAGAACGGATCTGGAGGAAGCTTCTGACGCTTCTTTACATGTTCGGCATTCCGTGGCTATTCCTTATCCAGTTCCTCAGAAGAACCTCTCAGTTCAGATAAAAGGGTCTGGTGGTGAAGGAGCCTTGTCACTGGACTTAGACAACAATTTAGCAAGTCAAGGGCCCAGAGTGCATGTCTTAAAGTGCTCTACCGCTGGAAAGCCCCTCTGGGAAACTGTACTAATGAGCCCCGGTATTGCTTTGGCTGGAAATAGACAAGTGATATGCGTAGCCTGTGAAAACAGAAGTATTAACCTTTTTTCTTCCGCCGGCAGAAAACTGCTGTCTTCCATTGTGCTTGATTCACCGGCCTCCATCTTGCAGTGCAGCCGCCATTACGTCATGGTTGTAACTTCTGCTGGAGGGGTGTACATTTGGGACACGAAGCGTCTAAAAGCAGTGCTTAAAAATGAACCAGTTGTTCCCCTCTTATCAGGTCCTGATATTACCATCACACGAGCCTCGATTTCAGAACCAGGATTTCCCATAATCACTCTCTCCAATCATGCTTCTTATTCCTACGACACATCCATAGGGGCCTGGCTCCAATTGATTCATGCTGATGACCTGTTGGCTGTTAACTCCGACCACCAATCCGTTACACCTTCCCAAGATCTCTTGCAGGCCCAGGGCCCACTAGCTCAGCTCCAGGGACAAAGTTCCAGATTCGGACGTCAGTCTACAAGACTTTTTCGTTCCAATCCTGGCCGACAACAATCCTCTACAGCTGTTTATTTGGAGAACCAGTTATCATCTTGCGTGGCTCTTGGTTCTGCGAAAGAGTACTACCATTGGCTAACCACCTACATACGCTATCTTTCTCAAGCTGGTTTTGAGGCTCGATTGCGTGAAGTTTGTGAGGAATTACTCGGCCCACCCCACAGAACGATCAGTCATCAGGACAAAACGTCCAGCTGGAATCCCTCTGTACTGGGATATCAGAAGAGAAGTCTCTTACGCCAACTTCTACCTCATATAGGAACAAACATTCGTCTGCAGAGACTTTTCACAGAGTTCAAGGAACAGCTGGATGCGCTTAATGTGCGGTAACTACATCACCACTGACTAGAGCGTGACATTTTTTGTTCATTGTGACGCTATGAATAGAACCTCAAGTAGACTTGGTACCAACATGATGTGACACGAAAGGTAACTCAGTTGCATGGTACTATCCGCTGCGCAGAACAGGTGGCAGGAGTTACAGTGGAGACTGTGACGAGTTATGAACGGCGTGACCTATGTTACTTGGTGTGATCTAAGAAAAAATGATATCATGTAACACAAGCCGCGTGGCAAATTGACCAAAGCGTGTGTCACAACTGCAATTGCGCTCATCCCCAGAATTAACGGGAAAGACTGAATCAAGTGTACAGTGCATTGCATTGGAGACGGGCAGACATTTTCGCATTGTTATGTGACAGTGCAGGGATGGACCATGCGGTGAACGACCTGGTGTTATCAACATCAGCGATCCCCTTATTTCGACTGGTGTACTTAATGCGAGCGTCGATTAAGAGCAACAAAGTGTTTACTGACGCGAAACTACATTTAACACCTTCAGTTTGATGTAAGGAACAGCAGGGCATATTTCAGCGAAAAAAAAAACAAATTAACCTAATAAACTTGTGGATGGAAACCTCTCCCTctttttgttagagagcttacgcagtgacgacaaggatgtcgggaatttgcatattttattagaaaaacaattatttctgcgcatgcgtttttcattttGTCTGTTTTCGTGGTTTTTTTGTTTTTCTTTCTTGTGTATTTCTTTTGTTCTTCCAAAGGAACATTGAAATCAGCATTCTCAACCTCTACTCTGTCTTCTTTCACGAGACGGAAGTGGCTCTTTAGACAGACGTGATCACTGAGTCCCGCTACAAAGTAAGAGTAATTAGCTTGGGCTTTTTTACGATATAGTGCAGCTTTTCAAGCGGGCATCGGCTTATTCCACTGATTTTAATCTTTGCTTTGCGGTCCATTAAGTCTTAGAGTCGAGATTTAATGGATAAAATAACACCGATTGTGTTTCAACCTGATGGAAGTGGATAAAATAGGTTCAGTGGCGTTAGAGAATTCCCACTTGTTAATCCGGCtattggtggtttgcaaccaatctcgcacgaataacaatcctgcaatgtacaattgctggtggaagaacaaaagaagctaataagaaatctttttttttttgtccactaacatggcggctatgtaacgtgaaaaaaacacctatTAATGTTATCTTGCCACTGTTTTCAGTTCTTTTATTGATTTTTATTTCTGTGAGAATTTGAATTTGTGTATCCATGTGTATCTGATCTCCGTGCGCCACCAGTTCTGAACTTTTCTCTAAAACCCTTGAATATTAGCCAGAATGCATCCAACCCCAAAATATATGTATGTTCGATGAACTACCAAAGAAAAAGTAAAAAAATTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q61666	Protein HIRA OS=Mus musculus OX=10090 GN=Hira PE=1 SV=3
Q8QFR2	Protein HIRA OS=Xenopus laevis OX=8355 GN=hira PE=1 SV=2
P79987	Protein HIRA OS=Gallus gallus OX=9031 GN=HIRA PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004897 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07569 all species →	Hira	TUP1-like enhancer of split	Family	Interproscan
PF09453 all species →	HIRA_B	HIRA B motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR011494 all species →	Domain	Protein HIRA-like, C-terminal	Interproscan
IPR019015 all species →	Conserved_site	HIRA B motif	Interproscan
IPR031120 all species →	Family	WD repeat HIR1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13831 all species →	MEMBER OF THE HIR1 FAMILY OF WD-REPEAT PROTEINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000417 all species →	Cellular Component	HIR complex	Interproscan
GO:0000790 all species →	Cellular Component	chromatin	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006325 all species →	Biological Process	chromatin organization	Interproscan
GO:0006336 all species →	Biological Process	chromatin organization	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0031491 all species →	Molecular Function	nucleosome binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0085.g68.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.