Gene detail

Detailed information of amic_s0085.g7.t2 in Acropora microphthalma

Genomic Location: sc0000085_pilon:68686...77052
NR annotation: XP_029188790.2, oxygen-dependent coproporphyrinogen-III oxidase-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0085.g7.t2

GCAGGCAAGAGTAATTCCTAAGAAAATGGCTTTTACACGTACACTTTTTGGAGTTTTTCGTGCTCTAAGAAATCATAAGACCGGAGTAATTTTTCTGGGCGTAGGTGCTTCAGCAATAGGAATGGGTACTACTGTAGGATATTCATTTGCTCTCGCGCGCGAGAATCCACGAACTCTCAACGTCTCCCAATTCATGGCTGAACCTCTAACAGAAGTGGATACGTTGGAGAACAGCATGGACGACATGAAGAGCCGTATGGAGATTATGATTTTGGGCGTTCAAGGAGACATCTGCAAGAAATTAGAGGAAATCGAAGGGGGAAAGTTTCACGTGGATCGCTGGTTGAGGAAAGAAGGAGGAGGTGGTGTCAGTTGCGTTTTGCAAGATGGAAAAGTATTTGAGAAAGCTGGTGTGAATGTTTCTGTCGTATATGGCAACTTACCACTTCAAGCCATGCAACAGATGCGAAACAGAGGCATAGATCTCAAAGGAGACAAGATCACCTTTTTTGCTGCTGGAATTAGCTCAGTCATTCACCCACGTAATCCATTTGTTCCGACCTTACACTTCAACTATCGTTATTTTGAAGTGCAGGAAGAAAGTGGCAAAAAGCACAGCTGGTTTGGTGGAGGAACTGACCTGACACCATATTATTTGAATGAAGAGGATGTAAAGCATTTTCATAAAACTCTGAAGGAATTTTGTGATAAATATGATCCATCTTACTATCCCAAGTTCAAGAAATGGTGTGATCAATATTTTGTCGTGAAACATAGAGGTGAATGTCGTGGTGTTGGTGGCATTTTCTTCGACGATCTTGACAAGCCCTCTCAGGAAGCGGCTTTCCAGTTTATTCAAGCAGGAGCAAATGCTGTTCTTCCTGGTTATGTTCCTATTGTGGAGAAGCACAAAAATGATCCTTATACTCACAAGGAGCGACAATGGCAGTTGCTGAGAAGAGGAAGTAAGCCACACCGTGGGTTGCTTGTGTTTATTGCCAATTGGAAAGTCATGGCAATATCTATTGGAGTATGGGATGTAAAGCATTTTCATAAAACTCTGATGGAATTTTGTGATAAATATGATCCATCTTACTATCCCAAATTCAAGAAATGGTGTGATCAATATTTTGTCGTGAAACATAGAGGTGAATGTCGTGGTGTTGGTGGCATTTTCTTTGACGATCTTGACAAGCCCTCTCAGGAAGCAGCTTTCCAGTTTATTCAAGCAGGAGCAAATGCTGTTCTTCCTAGTTATGTTCCTATTGTGGAGAAGCACAAAAATGATCCTTATACTCACAAGGAGCGACAATGGCAGTTGCTGAGAAGAGGAAGATATGTGGAGTTTAACCTGGTTTATGACCGTGGCACCAAGTTTGGACTCTATACACCAGGGGCTCGTATAGAAAGCATCTTAATGTCCTTGCCGCTGGAGGCTCGTTGGGAATACATGCATGCCCCTGAAATAGGAAGCAAAGAGGAGGAACTTATGCAGGTTCTACGGAATCCAAGAAGCTGGGTGGAATAAGTAGGAAATAGGCGCAAAGACAATGGTAGGCTTAGAGTGGCTGTATGTGGTGCTATGAAGGTTTTTTTCTTAGCATCGGGTTACATTAGTATGCTGGAGTGACAGAACATTAGAACTTGGCTAGTTTAAAGGAATTCTTGGCTTTTACTCACGTGATCATCCGCCTCTTGCTTTTGCTGTTTTTTTAACCGAAACAATTAGGAACGCTTTTGAAAGAGAACGGAGAATTATTAGACGGGCGGCGTTCTTTGATTTTGGACTCAAATTTAGTCGTCTTGATGTCGTGTGGAAACTAAGAATAGTATTTTTTTATTATTATTTATTAGTGTTCTAATTTCATTTCATTTCAAATTATGAAATGAAATTGATGAAATAAAGATTGCTAGACTGTGGCTGCAGAAGACATACCTTGCAGCATATTTATCAGCAAGGTTTGTTCGCAATCATTACGAACCTAGCTTGGAAAAATATTTTCAAGCAGATAGCAAGATGAAATGTTTTACGAGGGAAACCTTGAAAATTTGTCTGCAAAGCACGGGTATTCCACGTGCAAGTTGCTTTTGGTCACGAAAAGCGCGGGAAGCCCAAGGTCTGTTATCGCGTTTATTCAGAGGAGGCTGAAGAGAAAAAATTAGAGTATCGCATGCAAATCGCTGTGAATTGTAAGTGGCCGAGCGCAATGAAAATAATGGAACAATACCTATTGGTTTTGTACCGTCATACCATTTCACTGCAAACCAGAGGCTTTTTTAATGGTAACTTAGGGCGCGTCAgaattgtcctgccggatcagcccgttctgccggactgagagctctttctagccaaattgaccctgctttggaaggatgatcagtttggtgaccataagctctgtcagttcggcagatttgcgttccatttgttggctggtatagatccgaccgaccacagttctgacaaaagctacaggtcctcatttgcgatgactaagaTAATAAAAAATTGCAGTTTCTAGAAAACGAAACTTTTGAACCAATATTATCGAGTCATGTTTAATTGATTTATTTCTTTTTTTGGTTCTCGAGGGAAATGTCGTGATAAGAAACAGATCAACTGAGTACCTTGACCAATTTTCAGTCATGTATTCGCCATGTCAGCCATTTTCTTATCGACTCTCTAATAAACACTGGTTTAAAAATATCATCGGCCAGGTTTTGTTTTTAAAAGGAGCCAATTATTTGAAAGCTCTTCAAGCAATCAATAGCTATCGTGGAAGGCTTGGATAGAAGATGCGATTTGAACTCATCTTGGCGTCGATTTGACGAGAGACCTCGAGAAGTGATGAAGCTTCTAAATCTTGGTGGAGTCTTTTCAATCATAAACAATACATTTCACCACCTTTGCGACAAAAATTCAGTGTATCTTGGGTTCCTCACGAAAAGGCAAAGTCCTTGTTGTGGACTTTTTCGTTGCTCTTTAACTGGAAAGAAGCCGTGTTTTCTTCAGCCTTAAAAGCACTAAAATATTAATGGCTGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9V3D2	Oxygen-dependent coproporphyrinogen-III oxidase OS=Drosophila melanogaster OX=7227 GN=Coprox PE=2 SV=1
Q3B7D0	Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Cpox PE=1 SV=1
P36552	Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial OS=Mus musculus OX=10090 GN=Cpox PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003796 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01218 all species →	Coprogen_oxidas	Coproporphyrinogen III oxidase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001260 all species →	Family	Coproporphyrinogen III oxidase, aerobic	Interproscan
IPR036406 all species →	Homologous_superfamily	Oxygen-dependent coproporphyrinogen III oxidase superfamily	Interproscan
IPR018375 all species →	Conserved_site	Coproporphyrinogen III oxidase, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10755 all species →	COPROPORPHYRINOGEN III OXIDASE, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004109 all species →	Molecular Function	coproporphyrinogen oxidase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006779 all species →	Biological Process	porphyrin-containing compound biosynthetic process	Interproscan
GO:0006782 all species →	Biological Process	protoporphyrinogen IX biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00228	CPOX, hemF; coproporphyrinogen III oxidase	EC:1.3.3.3	Porphyrin metabolism	ko00860	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.