Gene detail

Detailed information of amic_s0086.g33.t1 in Acropora microphthalma

Genomic Location: sc0000086_pilon:530083...551350
NR annotation: XP_044168829.1, chromodomain-helicase-DNA-binding protein 1-like isoform X2 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0086.g33.t1

CTTAAAGTTGAGTCAAGGCTGACTCAAAAATGTCTGGAGGAGAATGGATTGCAAGGAATTCATTTGCGAGCTTATCAGTTGGATGGAGTGATATGGATGAGGCGATGTTTCCGATGCGGTCATGGCTGCATTCTAGGGGATGAAATGGGCCTTGGTAAAACTATCCAGACAGTAGCATTGTTGACAAATCTTCATGGAGCTGAGAATTGCCCTGGACCTTTCCTCATTGTCTGCCCATTATCCATCCTACAAAACTGGAAAAGTGAATTCTTAAGATTTTCAAAACATCTTATTGTTATTGCCTTCATTGGTGATAAAGAAGAAAGAGATAAAATCAAGGAGTCATTAAGAAATTTAAACACATCTCAGAACAGAGGAGACAAAAATAATACCCATTCATTCAATGTGCTTCTTACAACCTTTGAGATGTGTTTGCGAGAAACAACCTTTCTTTCCAAATTCAGTTGGAAAGCATTGGTTGTAGATGAGGCCCACAGATTGAAAAACTCCAAGTCAATGCTTTATCAAGAGCTTTCACAGTTTCAGAAGGACTTTGTTGTACTGTTAACAGGGACACCAGTCCAGAATAATCTCAGTGAACTGTATTCCCTGCTATCATTTATAAGCCCCAATATTTTTTCATGTGATGCTGTGGAGGAATTTTTGGAAAGGTATGCAGGTGTCTTCAACTGTGCAGAAAGAAATGCAGAATTACAAAAGCTCTTGTCACCTTTTTTGTTGCGCAGAGTGAAATCAGAGGTGATGGCGCATTTGCCCAAGAAAACAGAGGTTCTTCTCTATACAGGGATGTCGGATCTGCAGAGGAAGTACTACAAAGCGATTTTGATGAAAGACTTAGACGCGTTTGATTCTCCTGTTGGAACGAGTAAAACAAGACTTCTAAACATTCTTATTCAGCTTAGGAAGTGCGTCAACCATCCTTATCTATTTGATGGCGTGGAACCAGAGCCATTCCGACTTGGTGAGCACCTCGTAGATTCAAGTGGAAAGCTCCAAGTTATTGATCAGCTGTTGATATTTCTTAAGGCAAGAGGGCATAAAGTTTTGATGTTTTCCCAAATGACAAGAATGTTGGACATCATTCAAGACTATCTTGGTTATAGAGGATATTCATATGAGCGATTGGATGGTTCTGTCAGAGGGGAAGAGCGTTACCTGGCAATTCAGAACTTTAACGACACGGACGATACTTTTATATTCCTCTTGAGCACTCGAGCAGTCGTTTTACTTGACGTGTTCCAGGTGGTCAAGGATTGAACCTGATGTCTGCTGACACGGTCATCTTTGTTGACAGCGACTTTAATCCGCAGAACGACCTACAAGCAGCAGCACGGGCTCATCGAATTGGCCAAACGAGGCCAGTGAAAATCATTCGTCTCGTAACCCGAAGCACAGTGGAGGAAATAGTGTTGAAAAGAGCAGACGAAAAGTTGAAGCTGACCAATGCGGTGATAGAGAACGGAAAGTTTTCTGGTGGTGCATCAGCTATAAACCAAATCGCAGAGACTCCTACTCAGCTTGCAGACTTGCTCAAATTTGGCTTGGACAAGTTATCTGAATCTCAGGAAAGCGCAGCAACGGAGAAAGACCTTGAGAGGATCCTAGGAGGGAGCTGTGACAATAAGTGGATTGTAGAGCAAGAGACTGGGGATGAAAGTATTGGAAATGGCgatgatgatgatgatgatgtgacgtcatctatgcagatagataataatgaCGGAAATGTGGAGAATATGTACGTGTACGAAGGCTGTGACTACTCAAAGGAAACAAGCGACAGAGATCAACAAGCCTTTGATAACATGGTGGCAGAGATGTTAACAAAAGTTCAATCAGAAGAGAGGATTCTGCGCGGGGATGAGCGAAAGAGCATTGCAACAAATTATTTTGATCCTCCGGCAACCAGAAAACGAAAAGTTCTTACACCAGAAGAACTCGAGGAACGACGAAGGAAGAGGGAAGAGAATGCTTTAAAAAGAGCGAAATTGCAAGAAGAAGCAGAAGTTAGACGGGAAATAGAAAGGCAAAGGAAGCTGGAGAAATTATGGAAAGATCACAATTACGTAAGCCTCAACACTGCCTTAgacgatgacgacgaaaatgtcgatgaagaaagtgatgcacttgatgaagacgaAGGCAGTGAAAGAAAGGATATTCAGTATGTGCGTGGTGACGTCACACATCCCATCAACACTCGCAGCTCTGATGCAATCATTGTGCATTGCGTAGATGACTCAGGGTGCTGGGGTAATGGGGGTTTATTTTGTGCCTTATCTCGTCGATCTTCGCAACCGGAAACTCGGTACGAACTGGCAGGCAAAATGAAAGATCTGAACCTCGGAGACGCTCATCTTATTCAAATCGATGATCAAGATGGAAGGAAAGATGGTCATGATTACGTGGCTTTAATCGTTGCACAGTCACGTGACCGCAAGAATCAACTGTCAGCCATTTTGCTGACGTCTCTGAGCGAGGGTCTGAGGAGAGTTTCATTGGCGGCCAAAAGAATGAATGCCACTGTCCATCTCCCTCGGCTCGGTTACAATACTCCAAGCTTTAACTGGTATGGAACAGAGAGATTGATCCGTAAGCATTTGGCGTCCAAAGGGATTGAAACGTCAATATATTATTATGCAAGGCGGGATCAAGTGTCTAGTGGATCATTAGCTTTGCTCCCTTCAGCATCAAACGCTGGAGATCCAACCTCGACCCAGAGCAGGAATAAAAATCTTAAAGACGACAGTCCCGCTGGTGTTGATTTCAGAGGAAATCTCCCAAACTTCATGCGCGGTGTCAATGTTTTCTTTTTTAATGTTGACCAAGATGAAAAGAAGAAACTCACACGTTACTTGGTTGCATATCCTTTCCAATTGTTCTAACATGTATTTTCCTCTTGCGCTCTCGTCATCCCTTTTGGTGGTGCGTTGCGTGACTGCGTGACTGCGTGACATCTAGACTTATACCCGAACAATTTCCTTAACATTGTTTAATTACGACGGGGAAGTGTCTCATTTTGCCTGCCAGAGCGTTACACATGTGGTTTGTGATAAGCAGGCTGACACGAGTATTACGTTTGAAGATTGGATGGTTGGAGTGAAGATTGTCAGTTCTAAGTGGCTCGTTAAATGTTTCAAAAAGGGTCGACAAGTAGACACAAGACTTTACGAAATAGAAAACAGCTGACAAGTAATGGATAAACACACACAGAAAAAAAAAACTGTTTTAGTGCTGCGTCAGGGTGCAAAAGAATGGCAATGAAAAGGTGTTTTCTTGTTCTTCCTGCTTTGACGTCAAGTCGTCATTGTTCTGTTAGGATAATGATAATGGAGAAATAGTTGTTTTGAGATAGCATAGAAATAATACTTGCTTTCAATTGGCAGGCTCTCCAGGAGTGGTCTCTAGAGTTGACAGGGTCAAGGTCTTAAATATATTCGTGCGTTAACCGATTTAAATAAATCAGCAGTTATTATTTGCAACGTCTCATCGCCTCAGTGTTAATTAAAAACTTTCATGGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7ZU90	Chromodomain-helicase-DNA-binding protein 1-like OS=Danio rerio OX=7955 GN=chd1l PE=2 SV=1
Q3B7N1	Chromodomain-helicase-DNA-binding protein 1-like OS=Bos taurus OX=9913 GN=CHD1L PE=2 SV=1
Q86WJ1	Chromodomain-helicase-DNA-binding protein 1-like OS=Homo sapiens OX=9606 GN=CHD1L PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000968 (this species only)

Pfam domain

No Pfam domain signature was detected for amic_s0086.g33.t1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR043472 all species →	Homologous_superfamily	Macro domain-like	Interproscan
IPR002589 all species →	Domain	Macro domain	Interproscan
IPR031053 all species →	Family	Chromodomain-helicase-DNA-binding protein 1-like	Interproscan
IPR049730 all species →	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47157 all species →	CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0086.g33.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.