Gene detail

Detailed information of amic_s0086.g33.t2 in Acropora microphthalma

Genomic Location: sc0000086_pilon:530083...551350
NR annotation: XP_044168830.1, chromodomain-helicase-DNA-binding protein 1-like isoform X3 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0086.g33.t2

ATGGCGCATTTGCCCAAGAAAACAGAGGTTCTTCTCTATACAGGGATGTCGGATCTGCAGAGGAAGTACTACAAAGCGATTTTGATGAAAGACTTAGACGCGTTTGATTCTCCTGTTGGAACGAGTAAAACAAGACTTCTAAACATTCTTATTCAGCTTAGGAAGTGCGTCAACCATCCTTATCTATTTGATGGCGTGGAACCAGAGCCATTCCGACTTGGTGAGCACCTCGTAGATTCAAGTGGAAAGCTCCAAGTTATTGATCAGCTGTTGATATTTCTTAAGGCAAGAGGGCATAAAGTTTTGATGTTTTCCCAAATGACAAGAATGTTGGACATCATTCAAGACTATCTTGGTTATAGAGGATATTCATATGAGCGATTGGATGGTTCTGTCAGAGGGGAAGAGCGTTACCTGGCAATTCAGAACTTTAACGACACGGACGATACTTTTATATTCCTCTTGAGCACTCGAGCAGGTGGTCAAGGATTGAACCTGATGTCTGCTGACACGGTCATCTTTGTTGACAGCGACTTTAATCCGCAGAACGACCTACAAGCAGCAGCACGGGCTCATCGAATTGGCCAAACGAGGCCAGTGAAAATCATTCGTCTCGTAACCCGAAGCACAGTGGAGGAAATAGTGTTGAAAAGAGCAGACGAAAAGTTGAAGCTGACCAATGCGGTGATAGAGAACGGAAAGTTTTCTGGTGGTGCATCAGCTATAAACCAAATCGCAGAGACTCCTACTCAGCTTGCAGACTTGCTCAAATTTGGCTTGGACAAGTTATCTGAATCTCAGGAAAGCGCAGCAACGGAGAAAGACCTTGAGAGGATCCTAGGAGGGAGCTGTGACAATAAGTGGATTGTAGAGCAAGAGACTGGGGATGAAAGTATTGGAAATGGCgatgatgatgatgatgatgtgacgtcatctatgcagatagataataatgaCGGAAATGTGGAGAATATGTACGTGTACGAAGGCTGTGACTACTCAAAGGAAACAAGCGACAGAGATCAACAAGCCTTTGATAACATGGTGGCAGAGATGTTAACAAAAGTTCAATCAGAAGAGAGGATTCTGCGCGGGGATGAGCGAAAGCAGAGCATTGCAACAAATTATTTTGATCCTCCGGCAACCAGAAAACGAAAAGTTCTTACACCAGAAGAACTCGAGGAACGACGAAGGAAGAGGGAAGAGAATGCTTTAAAAAGAGCGAAATTGCAAGAAGAAGCAGAAGTTAGACGGGAAATAGAAAGGCAAAGGAAGCTGGAGAAATTATGGAAAGATCACAATTACGTAAGCCTCAACACTGCCTTAgacgatgacgacgaaaatgtcgatgaagaaagtgatgcacttgatgaagacgaAGGCAGTGAAAGAAAGGATATTCAGTATGTGCGTGGTGACGTCACACATCCCATCAACACTCGCAGCTCTGATGCAATCATTGTGCATTGCGTAGATGACTCAGGGTGCTGGGGTAATGGGGGTTTATTTTGTGCCTTATCTCGTCGATCTTCGCAACCGGAAACTCGGTACGAACTGGCAGGCAAAATGAAAGATCTGAACCTCGGAGACGCTCATCTTATTCAAATCGATGATCAAGATGGAAGGAAAGATGGTCATGATTACGTGGCTTTAATCGTTGCACAGTCACGTGACCGCAAGAATCAACTGTCAGCCATTTTGCTGACGTCTCTGAGCGAGGGTCTGAGGAGAGTTTCATTGGCGGCCAAAAGAATGAATGCCACTGTCCATCTCCCTCGGCTCGGTTACAATACTCCAAGCTTTAACTGGTATGGAACAGAGAGATTGATCCGTAAGCATTTGGCGTCCAAAGGGATTGAAACGTCAATATATTATTATGCAAGGCGGGATCAAGTGTCTAGTGGATCATTAGCTTTGCTCCCTTCAGCATCAAACGCTGGAGATCCAACCTCGACCCAGAGCAGGAATAAAAATCTTAAAGACGACAGTCCCGCTGGTGTTGATTTCAGAGGAAATCTCCCAAACTTCATGCGCGGTGTCAATGTTTTCTTTTTTAATGTTGACCAAGATGAAAAGAAGAAACTCACACGTTACTTGGTTGCATATCCTTTCCAATTGTTCTAA

Transcript

amic_s0086.g33.t2

CTTAAAGTTGAGTCAAGGCTGACTCAAAAATGTCTGGAGGAGAATGGATTGCAAGGAATTCATTTGCGAGCTTATCAGTTGGATGGAGTGATATGGATGAGGCGATGTTTCCGATGCGGTCATGGCTGCATTCTAGGGGATGAAATGGGCCTTGGTAAAACTATCCAGACAGTAGCATTGTTGACAAATCTTCATGGAGCTGAGAATTGCCCTGGACCTTTCCTCATTGTCTGCCCATTATCCATCCTACAAAACTGGAAAAGTGAATTCTTAAGATTTTCAAAACATCTTATTGTTATTGCCTTCATTGGTGATAAAGAAGAAAGAGATAAAATCAAGGAGTCATTAAGAAATTTAAACACATCTCAGAACAGAGGAGACAAAAATAATACCCATTCATTCAATGTGCTTCTTACAACCTTTGAGATGTGTTTGCGAGAAACAACCTTTCTTTCCAAATTCAGTTGGAAAGCATTGGTTGTAGATGAGGCCCACAGATTGAAAAACTCCAAGTCAATGCTTTATCAAGAGCTTTCACAGTTTCAGAAGGACTTTGTTGTACTGTTAACAGGGACACCAGTCCAGAATAATCTCAGTGAACTGTATTCCCTGCTATCATTTATAAGCCCCAATATTTTTTCATGTGATGCTGTGGAGGAATTTTTGGAAAGGTATGCAGGTGTCTTCAACTGTGCAGAAAGAAATGCAGAATTACAAAAGCTCTTGTCACCTTTTTTGTTGCGCAGAGTGAAATCAGAGGTGATGGCGCATTTGCCCAAGAAAACAGAGGTTCTTCTCTATACAGGGATGTCGGATCTGCAGAGGAAGTACTACAAAGCGATTTTGATGAAAGACTTAGACGCGTTTGATTCTCCTGTTGGAACGAGTAAAACAAGACTTCTAAACATTCTTATTCAGCTTAGGAAGTGCGTCAACCATCCTTATCTATTTGATGGCGTGGAACCAGAGCCATTCCGACTTGGTGAGCACCTCGTAGATTCAAGTGGAAAGCTCCAAGTTATTGATCAGCTGTTGATATTTCTTAAGGCAAGAGGGCATAAAGTTTTGATGTTTTCCCAAATGACAAGAATGTTGGACATCATTCAAGACTATCTTGGTTATAGAGGATATTCATATGAGCGATTGGATGGTTCTGTCAGAGGGGAAGAGCGTTACCTGGCAATTCAGAACTTTAACGACACGGACGATACTTTTATATTCCTCTTGAGCACTCGAGCAGGTGGTCAAGGATTGAACCTGATGTCTGCTGACACGGTCATCTTTGTTGACAGCGACTTTAATCCGCAGAACGACCTACAAGCAGCAGCACGGGCTCATCGAATTGGCCAAACGAGGCCAGTGAAAATCATTCGTCTCGTAACCCGAAGCACAGTGGAGGAAATAGTGTTGAAAAGAGCAGACGAAAAGTTGAAGCTGACCAATGCGGTGATAGAGAACGGAAAGTTTTCTGGTGGTGCATCAGCTATAAACCAAATCGCAGAGACTCCTACTCAGCTTGCAGACTTGCTCAAATTTGGCTTGGACAAGTTATCTGAATCTCAGGAAAGCGCAGCAACGGAGAAAGACCTTGAGAGGATCCTAGGAGGGAGCTGTGACAATAAGTGGATTGTAGAGCAAGAGACTGGGGATGAAAGTATTGGAAATGGCgatgatgatgatgatgatgtgacgtcatctatgcagatagataataatgaCGGAAATGTGGAGAATATGTACGTGTACGAAGGCTGTGACTACTCAAAGGAAACAAGCGACAGAGATCAACAAGCCTTTGATAACATGGTGGCAGAGATGTTAACAAAAGTTCAATCAGAAGAGAGGATTCTGCGCGGGGATGAGCGAAAGCAGAGCATTGCAACAAATTATTTTGATCCTCCGGCAACCAGAAAACGAAAAGTTCTTACACCAGAAGAACTCGAGGAACGACGAAGGAAGAGGGAAGAGAATGCTTTAAAAAGAGCGAAATTGCAAGAAGAAGCAGAAGTTAGACGGGAAATAGAAAGGCAAAGGAAGCTGGAGAAATTATGGAAAGATCACAATTACGTAAGCCTCAACACTGCCTTAgacgatgacgacgaaaatgtcgatgaagaaagtgatgcacttgatgaagacgaAGGCAGTGAAAGAAAGGATATTCAGTATGTGCGTGGTGACGTCACACATCCCATCAACACTCGCAGCTCTGATGCAATCATTGTGCATTGCGTAGATGACTCAGGGTGCTGGGGTAATGGGGGTTTATTTTGTGCCTTATCTCGTCGATCTTCGCAACCGGAAACTCGGTACGAACTGGCAGGCAAAATGAAAGATCTGAACCTCGGAGACGCTCATCTTATTCAAATCGATGATCAAGATGGAAGGAAAGATGGTCATGATTACGTGGCTTTAATCGTTGCACAGTCACGTGACCGCAAGAATCAACTGTCAGCCATTTTGCTGACGTCTCTGAGCGAGGGTCTGAGGAGAGTTTCATTGGCGGCCAAAAGAATGAATGCCACTGTCCATCTCCCTCGGCTCGGTTACAATACTCCAAGCTTTAACTGGTATGGAACAGAGAGATTGATCCGTAAGCATTTGGCGTCCAAAGGGATTGAAACGTCAATATATTATTATGCAAGGCGGGATCAAGTGTCTAGTGGATCATTAGCTTTGCTCCCTTCAGCATCAAACGCTGGAGATCCAACCTCGACCCAGAGCAGGAATAAAAATCTTAAAGACGACAGTCCCGCTGGTGTTGATTTCAGAGGAAATCTCCCAAACTTCATGCGCGGTGTCAATGTTTTCTTTTTTAATGTTGACCAAGATGAAAAGAAGAAACTCACACGTTACTTGGTTGCATATCCTTTCCAATTGTTCTAACATGTATTTTCCTCTTGCGCTCTCGTCATCCCTTTTGGTGGTGCGTTGCGTGACTGCGTGACTGCGTGACATCTAGACTTATACCCGAACAATTTCCTTAACATTGTTTAATTACGACGGGGAAGTGTCTCATTTTGCCTGCCAGAGCGTTACACATGTGGTTTGTGATAAGCAGGCTGACACGAGTATTACGTTTGAAGATTGGATGGTTGGAGTGAAGATTGTCAGTTCTAAGTGGCTCGTTAAATGTTTCAAAAAGGGTCGACAAGTAGACACAAGACTTTACGAAATAGAAAACAGCTGACAAGTAATGGATAAACACACACAGAAAAAAAAAACTGTTTTAGTGCTGCGTCAGGGTGCAAAAGAATGGCAATGAAAAGGTGTTTTCTTGTTCTTCCTGCTTTGACGTCAAGTCGTCATTGTTCTGTTAGGATAATGATAATGGAGAAATAGTTGTTTTGAGATAGCATAGAAATAATACTTGCTTTCAATTGGCAGGCTCTCCAGGAGTGGTCTCTAGAGTTGACAGGGTCAAGGTCTTAAATATATTCGTGCGTTAACCGATTTAAATAAATCAGCAGTTATTATTTGCAACGTCTCATCGCCTCAGTGTTAATTAAAAACTTTCATGGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7ZU90	Chromodomain-helicase-DNA-binding protein 1-like OS=Danio rerio OX=7955 GN=chd1l PE=2 SV=1
Q3B7N1	Chromodomain-helicase-DNA-binding protein 1-like OS=Bos taurus OX=9913 GN=CHD1L PE=2 SV=1
Q86WJ1	Chromodomain-helicase-DNA-binding protein 1-like OS=Homo sapiens OX=9606 GN=CHD1L PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000968 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00176 all species →	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR031053 all species →	Family	Chromodomain-helicase-DNA-binding protein 1-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR043472 all species →	Homologous_superfamily	Macro domain-like	Interproscan
IPR000330 all species →	Domain	SNF2, N-terminal	Interproscan
IPR002589 all species →	Domain	Macro domain	Interproscan
IPR049730 all species →	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47157 all species →	CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0140658 all species →	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20092	CHD1L; chromodomain-helicase-DNA-binding protein 1-like	EC:5.6.2.-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.